Nucleotide Global Alignment

Description

Query:
TRCN0000492103
Subject:
XM_011243115.1
Aligned Length:
1849
Identities:
1570
Gaps:
89

Alignment

Query    1  ATGGAAGACTCCCAGGATTTAAATGAACAATCAGTAAAGAAAACGTGCACAGAATCAGATGTTTCACAATCTCA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  GAATTCCAGGTCTATGGAAATGCAGGACCTAGCAAGTCCTCATACTCTT-GTTGGAGGTGGTGATACTCCAGGT  147
                         |||||||||||.||||||||||||||.|||.| ||| ||||||||..|||||||.||.||.
Sbjct    1  -------------ATGGAAATGCAAGACCTAGCAAGTCCCCATGC-CTTGGTTGGAGGCAGTGATACACCTGGG  60

Query  148  AGCTCCAAACTGGAAAAATCTAATCTCAGCAGCACATCAGTTACTACAAATGGGACAGGAGTGTCTCTTCTTGC  221
            ||||||||.|||||.||||||..||||||||||||.|||||.||.|||||||||||||||||||||||||||||
Sbjct   61  AGCTCCAAGCTGGATAAATCTGGTCTCAGCAGCACTTCAGTCACAACAAATGGGACAGGAGTGTCTCTTCTTGC  134

Query  222  AGTCAAAACAGAGCCCTTGAACAGCAGTGAAACCACAGCCACGACTGGAGATGGAGCGCTTGACACTTTTACTG  295
            |||||||||||||||||||.||||||||||..||||..||||||||||||||||||||||||||||||||||||
Sbjct  135  AGTCAAAACAGAGCCCTTGCACAGCAGTGAGTCCACTACCACGACTGGAGATGGAGCGCTTGACACTTTTACTG  208

Query  296  GGTCAGTAATTACAAGTAGTGGCTACAGCCCCAGATCAGCACATCAGTATTCCCCACAGCTGTATCCTTCCAAG  369
            ||||||||||.|||||.||.||||||||||||||.||.||.||.|||||.||.|||||||||||.||.||||||
Sbjct  209  GGTCAGTAATAACAAGCAGCGGCTACAGCCCCAGGTCGGCGCAGCAGTACTCTCCACAGCTGTACCCCTCCAAG  282

Query  370  CCCTATCCACACATTCTTTCTACACCAGCAGCTCAAACAATGTCTGCCTATGCAGGCCAGACTCAGTATTCGGG  443
            ||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.||.||
Sbjct  283  CCCTATCCACACATTCTTTCTACACCAGCAGCTCAAACAATGTCGGCCTATGCAGGCCAGACTCAGTACTCTGG  356

Query  444  GATGCAGCAGCCAGCCGTCTACACAGCCTACTCACAGACAGGACAGCCCTACAGCTTGCCCACTTACGATTTGG  517
            ||||||||||||.||||||||||||||||||||.|||||||||||||||||||||.||||..|.||||||.|.|
Sbjct  357  GATGCAGCAGCCGGCCGTCTACACAGCCTACTCGCAGACAGGACAGCCCTACAGCCTGCCTGCCTACGATCTTG  430

Query  518  GTGTGATGTTGCCAGCCATCAAGACAGAGAGTGGACTTTCCCAAACTCAGTCCCCATTACAGAGTGGCTGCCTC  591
            |||||||||||||||||||||||||.||.|||||.||||||||||||||||||||.|||||||||||||||||.
Sbjct  431  GTGTGATGTTGCCAGCCATCAAGACGGAAAGTGGGCTTTCCCAAACTCAGTCCCCGTTACAGAGTGGCTGCCTG  504

Query  592  AGTTACAGCCCAGGGTTCTCTACCCCACAGCCAGGCCAGACACCTTATTCTTACCAAATGCCAGGTTCTAGTTT  665
            ||.||||||||.|||||.|||||||||||||||||||||||.|||||.||||||||||||||||||||.||.||
Sbjct  505  AGCTACAGCCCTGGGTTTTCTACCCCACAGCCAGGCCAGACGCCTTACTCTTACCAAATGCCAGGTTCCAGCTT  578

Query  666  TGCACCATCATCTACTATTTATGCAAATAATTCAGTTTCCAATTCAACAAATTTCAGTGGTTCACAACAGGATT  739
            |||||||||.|||||||||||||||||||||||.|||||.|||||||||||.|||||..|.|||||.|||||||
Sbjct  579  TGCACCATCGTCTACTATTTATGCAAATAATTCCGTTTCTAATTCAACAAACTTCAGCAGCTCACAGCAGGATT  652

Query  740  ATCCATCCTATACAGCCTTTGGCCAAAACCAGTATGCACAGTATTATTCAGCATCAACGTATGGAGCGTATATG  813
            |.||||||||.||||||||||||||||||||.|||||.||||||||.|||||||||||.|||||.||.||.|||
Sbjct  653  ACCCATCCTACACAGCCTTTGGCCAAAACCAATATGCTCAGTATTACTCAGCATCAACCTATGGGGCATACATG  726

Query  814  ACATCGAATAACACAGCCGATGGCACACCCTCTTCAACCTCTACTTATCAGTTGCAGGAATCTCTCCCAGGACT  887
            |||||.||.||||||||.||.||||||.|.||.|||||.||.|||||||||.|||||||||||||||.||||||
Sbjct  727  ACATCAAACAACACAGCTGACGGCACATCATCGTCAACATCAACTTATCAGCTGCAGGAATCTCTCCAAGGACT  800

Query  888  GACTAACCAACCAGGAGAGTTCGATACCATGCAGAGTCCCTCCACACCCATCAAAGATCTTGATGAGAGAACCT  961
            |||||.|||||||||||||||.|||||..|||||||||||||||||||.|||||||||||.|||||.|||||.|
Sbjct  801  GACTAGCCAACCAGGAGAGTTTGATACAGTGCAGAGTCCCTCCACACCAATCAAAGATCTCGATGACAGAACAT  874

Query  962  GTAGGAGTTCTGGGTCAAAGTCCAGAGGAAGAGGCCGGAAAAATAATCCCTCCCCGCCTCCTGATAGTGACCTG  1035
            ||||.|||||||||||||||||..|||||||||||||||||||||||||||||||.|||||.||.||||||||.
Sbjct  875  GTAGAAGTTCTGGGTCAAAGTCTCGAGGAAGAGGCCGGAAAAATAATCCCTCCCCACCTCCGGACAGTGACCTA  948

Query 1036  GAGCGTGTGTTTGTCTGGGATTTGGATGAAACCATCATTGTTTTTCACTCACTGCTCACCGGGTCTTATGCACA  1109
            ||||||||||||||||||||.|||||||||||||||||.||.||.|||||.||.|||||.||.|||||||||||
Sbjct  949  GAGCGTGTGTTTGTCTGGGACTTGGATGAAACCATCATCGTCTTCCACTCTCTCCTCACGGGCTCTTATGCACA  1022

Query 1110  GAAGTATGGCAAGGATCCCCCCATGGCTGTAACCCTTGGACTCCGCATGGAAGAAATGATTTTTAATCTTGCTG  1183
            |||||||||||||||||||||.||||||||.||.||.||.|||||.||||||||||||||.|||||||||||.|
Sbjct 1023  GAAGTATGGCAAGGATCCCCCAATGGCTGTGACTCTCGGGCTCCGGATGGAAGAAATGATCTTTAATCTTGCAG  1096

Query 1184  ATACTCATTTGTTTTTTAATGATTTAGAGGAGTGTGATCAAGTTCATATAGATGATGTTTCCTCTGATGATAAT  1257
            ||||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||.||.||.|||
Sbjct 1097  ATACACATTTGTTTTTTAATGACTTAGAGGAGTGTGATCAAGTTCATATAGATGATGTTTCCTCCGACGACAAT  1170

Query 1258  GGGCAGGACTTAAGTACCTACAGTTTTGCAACTGATGGCTTCCATGCAGCTGCAAGTAGTGCAAACCTTTGTTT  1331
            ||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 1171  GGTCAGGACTTAAGTACCTACAGTTTTGCAACTGATGGCTTCCATGCAGCTGCAAGTAGTGCGAACCTTTGTTT  1244

Query 1332  GCCAACAGGTGTAAGAGGAGGGGTTGACTGGATGAGGAAGTTGGCTTTTCGTTACAGAAGAGTAAAAGAATTAT  1405
            ||||||||||||.||||||||.||.|||||||||||||||.|||||||||||||||||||||||||.|||||||
Sbjct 1245  GCCAACAGGTGTGAGAGGAGGAGTGGACTGGATGAGGAAGCTGGCTTTTCGTTACAGAAGAGTAAAGGAATTAT  1318

Query 1406  ATAACACCTACAAGAACAACGTTGGAGGACTCCTTGGCCCTGCCAAGAGGGATGCCTGGCTACAGTTAAGGGCA  1479
            |||||||||||||||||||.|||||||||||||||||||||||.|||||||||||.|||||.||||||||||||
Sbjct 1319  ATAACACCTACAAGAACAATGTTGGAGGACTCCTTGGCCCTGCTAAGAGGGATGCATGGCTGCAGTTAAGGGCA  1392

Query 1480  GAGATTGAAGGTCTGACAGATTCCTGGCTAACAAATGCACTTAAGTCTTTATCAATTATTAGCACTAGGAGTAA  1553
            |||||.|||||.||.|||||||||||||||||.|||||||||||||||||||||||||||||.|||||||||||
Sbjct 1393  GAGATCGAAGGCCTAACAGATTCCTGGCTAACGAATGCACTTAAGTCTTTATCAATTATTAGTACTAGGAGTAA  1466

Query 1554  CTGCATAAATGTCTTGGTAACGACAACTCAACTGATCCCAGCACTTGCGAAGGTTCTACTCTATAGTTTAGGAG  1627
            |||..||||||||||||||||||||||.||.|||||.||.||.|||||.||.||.||.|||||.||..||||||
Sbjct 1467  CTGTGTAAATGTCTTGGTAACGACAACCCAGCTGATTCCTGCTCTTGCAAAAGTCCTGCTCTACAGCCTAGGAG  1540

Query 1628  GTGCTTTCCCCATTGAGAATATTTACAGTGCAACTAAAATAGGAAAAGAAAGTTGCTTTGAACGAATAATGCAA  1701
            |||||||||||||||||||.||||||||.|||||.||||||||.||.|||||.||.|||||.||.|||.||...
Sbjct 1541  GTGCTTTCCCCATTGAGAACATTTACAGCGCAACGAAAATAGGCAAGGAAAGCTGTTTTGAGCGTATAGTGTCC  1614

Query 1702  AGGTTTGGCAGAAAAGTAGTGTATGTTGTAATTGGGGATGGTGTAGAAGAAGAACAGGCAGCAAAAAAGCACAA  1775
            ||.|||||||..||..||...||||||||.|||||.|||||....||.||.||.||.||.||.||..|||||||
Sbjct 1615  AGATTTGGCACTAACATAACTTATGTTGTGATTGGAGATGGCCGGGATGAGGAGCACGCTGCTAACCAGCACAA  1688

Query 1776  CATGCCCTTCTGGAGGATATCCAGTCACTCAGACCTCCTGGCTCTCCACCAAGCACTGGAATTAGAGTATTTG  1848
            |||||||||.|||||||||||.||.|||||.||||||.|||||||.||.||||||||||||||||||||||||
Sbjct 1689  CATGCCCTTTTGGAGGATATCAAGCCACTCGGACCTCTTGGCTCTACATCAAGCACTGGAATTAGAGTATTTG  1761

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.