Nucleotide Global Alignment

Description

Query:
TRCN0000492103
Subject:
XR_001779457.1
Aligned Length:
2698
Identities:
1478
Gaps:
1046

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGGCCTCGGTGGCCAGCGCCAGGCGGGGTGGGGGCGGGGTGAGGCGGCGCAGAGGGCGCGGAGATTACCGCGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCCACCAGAGACGCGCAGAGCCGGGGAGCCCCGGAGGTCCCCCCACGCGAGACCTCAAAAAAGAAAAAAAAAGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGATGATAACAGGCAGTTTCCAGAGATCGAATAAAAAGAGAGGGCTTCTGCGCCCGCCAAGATCTCCTGCTCTT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CCGGCGGCCTGCCGGGAGGCCCCCAGCGGCCACCCTAGCCCCAGGACGCAGGCGGCGACGTCCCCCCCCAACCC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCCCACATCCCGCCTCCTGCCTCTAGGCTCCAGCTCCGCGCGCTAGGGAGAGGCTGCCCGCGGCGCGGCGCACG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CTCCGGCGGCTCCCGGCTTGCGCGCAAACCTTTCCCGGTCGGCGCCCTAGAGAGGGGACTGAGCGGCGGGGACC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TGCGGAGGGACGCCCGGCCACCCGGCGCGCGCGCGCTTTCTCTTTTCTTCTGCTCGCTAACGCCGCTCGGCTGC  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  TCGGACTTTGGTTCGGCTCCTTTCGTCCTCCCCCCCCCCCCCTCGCAGCCGGCTCCCCCACCCCGCCCTGTTTC  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TCCCCCACTTGTGTAAGCTATTTGTTGGGGGTGGCCGAAAGGGATGTCCTGTTTTTACCAGAGACACAGCGCGA  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  AGGGAAAACTTAGACACTGGAAGGAAAGCGAGTAAATACGTAGATCGGACCCGCAGATCACTGGCTGGGACAGA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  CAATTGAACTTCGGGAGTCCAAGGCGGTCCGGGCCGCCAGAGATAGTCAAGTTTGAATCCAAGGAAGCTGCTTC  814

Query    1  ----------------------------------ATGGAAGACTCCCAGGATTTAAATGAACAATCAGTAAAGA  40
                                              |||||||||.|||||||..|||||||.|||||.|||||||
Sbjct  815  TGCGTGGCAGTGGCAAGAGAAGTTAGAGAACCACATGGAAGACACCCAGGACCTAAATGAGCAATCTGTAAAGA  888

Query   41  AAACGTGCACAGAATCAGATGTTTCACAATCTCAGAATTCCAGGTCTATGGAAATGCAGGACCTAGCAAGTCCT  114
            ||||||||.|||||.||||||||||..||.||||||||||||||||||||||||||||.||||||||||||||.
Sbjct  889  AAACGTGCCCAGAAGCAGATGTTTCGGAACCTCAGAATTCCAGGTCTATGGAAATGCAAGACCTAGCAAGTCCC  962

Query  115  CATACTCTT-GTTGGAGGTGGTGATACTCCAGGTAGCTCCAAACTGGAAAAATCTAATCTCAGCAGCACATCAG  187
            |||.| ||| ||||||||..|||||||.||.||.||||||||.|||||.||||||..||||||||||||.||||
Sbjct  963  CATGC-CTTGGTTGGAGGCAGTGATACACCTGGGAGCTCCAAGCTGGATAAATCTGGTCTCAGCAGCACTTCAG  1035

Query  188  TTACTACAAATGGGACAGGAGTGTCTCTTCTTGCAGTCAAAACAGAGCCCTTGAACAGCAGTGAAACCACAGCC  261
            |.||.||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||..||||..||
Sbjct 1036  TCACAACAAATGGGACAGGAGTGTCTCTTCTTGCAGTCAAAACAGAGCCCTTGCACAGCAGTGAGTCCACTACC  1109

Query  262  ACGACTGGAGATGGAGCGCTTGACACTTTTACTGGGTCAGTAATTACAAGTAGTGGCTACAGCCCCAGATCAGC  335
            ||||||||||||||||||||||||||||||||||||||||||||.|||||.||.||||||||||||||.||.||
Sbjct 1110  ACGACTGGAGATGGAGCGCTTGACACTTTTACTGGGTCAGTAATAACAAGCAGCGGCTACAGCCCCAGGTCGGC  1183

Query  336  ACATCAGTATTCCCCACAGCTGTATCCTTCCAAGCCCTATCCACACATTCTTTCTACACCAGCAGCTCAAACAA  409
            .||.|||||.||.|||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184  GCAGCAGTACTCTCCACAGCTGTACCCCTCCAAGCCCTATCCACACATTCTTTCTACACCAGCAGCTCAAACAA  1257

Query  410  TGTCTGCCTATGCAGGCCAGACTCAGTATTCGGGGATGCAGCAGCCAGCCGTCTACACAGCCTACTCACAGACA  483
            ||||.|||||||||||||||||||||||.||.||||||||||||||.||||||||||||||||||||.||||||
Sbjct 1258  TGTCGGCCTATGCAGGCCAGACTCAGTACTCTGGGATGCAGCAGCCGGCCGTCTACACAGCCTACTCGCAGACA  1331

Query  484  GGACAGCCCTACAGCTTGCCCACTTACGATTTGGGTGTGATGTTGCCAGCCATCAAGACAGAGAGTGGACTTTC  557
            |||||||||||||||.||||..|.||||||.|.||||||||||||||||||||||||||.||.|||||.|||||
Sbjct 1332  GGACAGCCCTACAGCCTGCCTGCCTACGATCTTGGTGTGATGTTGCCAGCCATCAAGACGGAAAGTGGGCTTTC  1405

Query  558  CCAAACTCAGTCCCCATTACAGAGTGGCTGCCTCAGTTACAGCCCAGGGTTCTCTACCCCACAGCCAGGCCAGA  631
            |||||||||||||||.|||||||||||||||||.||.||||||||.|||||.||||||||||||||||||||||
Sbjct 1406  CCAAACTCAGTCCCCGTTACAGAGTGGCTGCCTGAGCTACAGCCCTGGGTTTTCTACCCCACAGCCAGGCCAGA  1479

Query  632  CACCTTATTCTTACCAAATGCCAGGTTCTAGTTTTGCACCATCATCTACTATTTATGCAAATAATTCAGTTTCC  705
            |.|||||.||||||||||||||||||||.||.|||||||||||.|||||||||||||||||||||||.|||||.
Sbjct 1480  CGCCTTACTCTTACCAAATGCCAGGTTCCAGCTTTGCACCATCGTCTACTATTTATGCAAATAATTCCGTTTCT  1553

Query  706  AATTCAACAAATTTCAGTGGTTCACAACAGGATTATCCATCCTATACAGCCTTTGGCCAAAACCAGTATGCACA  779
            |||||||||||.|||||..|.|||||.||||||||.||||||||.||||||||||||||||||||.|||||.||
Sbjct 1554  AATTCAACAAACTTCAGCAGCTCACAGCAGGATTACCCATCCTACACAGCCTTTGGCCAAAACCAATATGCTCA  1627

Query  780  GTATTATTCAGCATCAACGTATGGAGCGTATATGACATCGAATAACACAGCCGATGGCACACCCTCTTCAACCT  853
            ||||||.|||||||||||.|||||.||.||.||||||||.||.||||||||.||.||||||.|.||.|||||.|
Sbjct 1628  GTATTACTCAGCATCAACCTATGGGGCATACATGACATCAAACAACACAGCTGACGGCACATCATCGTCAACAT  1701

Query  854  CTACTTATCAGTTGCAGGAATCTCTCCCAGGACTGACTAACCAACCAGGAGAGTTCGATACCATGCAGAGTCCC  927
            |.|||||||||.|||||||||||||||.|||||||||||.|||||||||||||||.|||||..|||||||||||
Sbjct 1702  CAACTTATCAGCTGCAGGAATCTCTCCAAGGACTGACTAGCCAACCAGGAGAGTTTGATACAGTGCAGAGTCCC  1775

Query  928  TCCACACCCATCAAAGATCTTGATGAGAGAACCTGTAGGAGTTCTGGGTCAAAGTCCAGAGGAAGAGGCCGGAA  1001
            ||||||||.|||||||||||.|||||.|||||.|||||.|||||||||||||||||..||||||||||||||||
Sbjct 1776  TCCACACCAATCAAAGATCTCGATGACAGAACATGTAGAAGTTCTGGGTCAAAGTCTCGAGGAAGAGGCCGGAA  1849

Query 1002  AAATAATCCCTCCCCGCCTCCTGATAGTGACCTGGAGCGTGTGTTTGTCTGGGATTTGGATGAAACCATCATTG  1075
            |||||||||||||||.|||||.||.||||||||.||||||||||||||||||||.|||||||||||||||||.|
Sbjct 1850  AAATAATCCCTCCCCACCTCCGGACAGTGACCTAGAGCGTGTGTTTGTCTGGGACTTGGATGAAACCATCATCG  1923

Query 1076  TTTTTCACTCACTGCTCACCGGGTCTTATGCACAGAAGTATGGCAAGGATCCCCCCATGGCTGTAACCCTTGGA  1149
            |.||.|||||.||.|||||.||.||||||||||||||||||||||||||||||||.||||||||.||.||.||.
Sbjct 1924  TCTTCCACTCTCTCCTCACGGGCTCTTATGCACAGAAGTATGGCAAGGATCCCCCAATGGCTGTGACTCTCGGG  1997

Query 1150  CTCCGCATGGAAGAAATGATTTTTAATCTTGCTGATACTCATTTGTTTTTTAATGATTTAGAGGAGTGTGATCA  1223
            |||||.||||||||||||||.|||||||||||.|||||.|||||||||||||||||.|||||||||||||||||
Sbjct 1998  CTCCGGATGGAAGAAATGATCTTTAATCTTGCAGATACACATTTGTTTTTTAATGACTTAGAGGAGTGTGATCA  2071

Query 1224  AGTTCATATAGATGATGTTTCCTCTGATGATAATGGGCAGGACTTAAGTACCTACAGTTTTGCAACTGATGGCT  1297
            ||||||||||||||||||||||||.||.||.|||||.|||||||||                            
Sbjct 2072  AGTTCATATAGATGATGTTTCCTCCGACGACAATGGTCAGGACTTA----------------------------  2117

Query 1298  TCCATGCAGCTGCAAGTAGTGCAAACCTTTGTTTGCCAACAGGTGTAAGAGGAGGGGTTGACTGGATGAGGAAG  1371
                                                    ||||||.||||||||.||.|||||||||||||||
Sbjct 2118  ----------------------------------------AGGTGTGAGAGGAGGAGTGGACTGGATGAGGAAG  2151

Query 1372  TTGGCTTTTCGTTACAGAAGAGTAAAAGAATTATATAACACCTACAAGAACAACGTTGGAGGACTCCTTGGCCC  1445
            .|||||||||||||||||||||||||.||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 2152  CTGGCTTTTCGTTACAGAAGAGTAAAGGAATTATATAACACCTACAAGAACAATGTTGGAGGACTCCTTGGCCC  2225

Query 1446  TGCCAAGAGGGATGCCTGGCTACAGTTAAGGGCAGAGATTGAAGGTCTGACAGATTCCTGGCTAACAAATGCAC  1519
            |||.|||||||||||.|||||.|||||||||||||||||.|||||.||.|||||||||||||||||.|||||||
Sbjct 2226  TGCTAAGAGGGATGCATGGCTGCAGTTAAGGGCAGAGATCGAAGGCCTAACAGATTCCTGGCTAACGAATGCAC  2299

Query 1520  TTAAGTCTTTATCAATTATTAGCACTAGGAGTAACTGCATAAATGTCTTGGTAACGACAACTCAACTGATCCCA  1593
            ||||||||||||||||||||||.||||||||||||||..||||||||||||||||||||||.||.|||||.||.
Sbjct 2300  TTAAGTCTTTATCAATTATTAGTACTAGGAGTAACTGTGTAAATGTCTTGGTAACGACAACCCAGCTGATTCCT  2373

Query 1594  GCACTTGCGAAGGTTCTACTCTATAGTTTAGGAGGTGCTTTCCCCATTGAGAATATTTACAGTGCAACTAAAAT  1667
            ||.|||||.||.||.||.|||||.||..|||||||||||||||||||||||||.||||||||.|||||.|||||
Sbjct 2374  GCTCTTGCAAAAGTCCTGCTCTACAGCCTAGGAGGTGCTTTCCCCATTGAGAACATTTACAGCGCAACGAAAAT  2447

Query 1668  AGGAAAAGAAAGTTGCTTTGAACGAATAATGCAAAGGTTTGGCA-GAAAAGTAGTGTATGTTGTAATTGGGGAT  1740
            |||.||.|||||.||.|||||.||.|||.||...||.||||||| .||.|             |||.|      
Sbjct 2448  AGGCAAGGAAAGCTGTTTTGAGCGTATAGTGTCCAGATTTGGCACTAACA-------------TAACT------  2502

Query 1741  GGTGTAGAAGAAGAACAGGCAGCAAAAAAGCACAACATGCCCTTCTGGAGGATATCCAGTCACTCAGACCTCCT  1814
                                                                                      
Sbjct 2503  --------------------------------------------------------------------------  2502

Query 1815  GGCTCTCCACCAAGCACTGGAATTAGAGTATTTG  1848
                                              
Sbjct 2503  ----------------------------------  2502

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