Nucleotide Global Alignment

Description

Query:
TRCN0000492306
Subject:
NM_001304955.1
Aligned Length:
1627
Identities:
1031
Gaps:
446

Alignment

Query    1  ATGTCAGATGCTCAGCTCGGTCCCCTCCGCCTGACGCTCCTCTCTGTCTCAGCCAGGACTGGTTTCTGTAAGAA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  ACAGCAGGAGCTGTGGCAGCGGCGAAAGGAAGCGGCTGAGGCGCTTGGAACCCGAAAAGTCTCGGTGCTCCTGG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CTACCTCGCACAGCGGTGCCCGCCCGGCCGTCAGTACCATGGACAGCAGCGCTGCCCCCACGAACGCCAGCAAT  222
                                                  ||||||||||||||.|.|||...||||..||||.|.
Sbjct    1  --------------------------------------ATGGACAGCAGCGCCGGCCCAGGGAACATCAGCGAC  36

Query  223  TGCACTGATGCCTTGGCGTACT-CAAGTTGCTCCCCAGCACCCAGCCCCGGTTCCTGGGTCAACTTGTCCCACT  295
            |||.||||..||||.|| |.|| |||||||||||||||||      ||.||.||||||.||||||||||||||.
Sbjct   37  TGCTCTGACCCCTTAGC-TCCTGCAAGTTGCTCCCCAGCA------CCTGGCTCCTGGCTCAACTTGTCCCACG  103

Query  296  TAGATGGCAACCTGTCCGACCCATGTGGTCCGAACCGCACCGACCTGGGCGGGAGAGACAGCCTGTGCCCTCCG  369
            |.||||||||||.||||||||||||.|||||.||||||||.|..||.||||||||..|||||||||||||||.|
Sbjct  104  TTGATGGCAACCAGTCCGACCCATGCGGTCCTAACCGCACGGGGCTTGGCGGGAGCCACAGCCTGTGCCCTCAG  177

Query  370  ACCGGCAGTCCCTCCATGATCACGGCCATCACGATCATGGCCCTCTACTCCATCGTGTGCGTGGTGGGGCTCTT  443
            ||||||||.||.||||||.||||.||||||||.||||||||||||||.||.||||||||.||.|||||.|||||
Sbjct  178  ACCGGCAGCCCTTCCATGGTCACAGCCATCACCATCATGGCCCTCTATTCTATCGTGTGTGTAGTGGGCCTCTT  251

Query  444  CGGAAACTTCCTGGTCATGTATGTGATTGTCAGATACACCAAGATGAAGACTGCCACCAACATCTACATTTTCA  517
            .|||||||||||||||||||||||||||||.|||||.|||||.|||||||||||||||||||||||||||||||
Sbjct  252  TGGAAACTTCCTGGTCATGTATGTGATTGTAAGATATACCAAAATGAAGACTGCCACCAACATCTACATTTTCA  325

Query  518  ACCTTGCTCTGGCAGATGCCTTAGCCACCAGTACCCTGCCCTTCCAGAGTGTGAATTACCTAATGGGAACATGG  591
            ||||||||||||||||||||||||||||.||.||.||||||||.||||||||.||.|||||.||||||||.|||
Sbjct  326  ACCTTGCTCTGGCAGATGCCTTAGCCACTAGCACGCTGCCCTTTCAGAGTGTTAACTACCTGATGGGAACGTGG  399

Query  592  CCATTTGGAACCATCCTTTGCAAGATAGTGATCTCCATAGATTACTATAACATGTTCACCAGCATATTCACCCT  665
            ||.|||||||.||||||.||||||||.||||||||.|||||.|||||.||||||||||||||.||.||||||||
Sbjct  400  CCCTTTGGAAACATCCTCTGCAAGATCGTGATCTCAATAGACTACTACAACATGTTCACCAGTATCTTCACCCT  473

Query  666  CTGCACCATGAGTGTTGATCGATACATTGCAGTCTGCCACCCTGTCAAGGCCTTAGATTTCCGTACTCCCCGAA  739
            |||||||||||||||.||.||.||||||||.|||||||||||.|||||||||.|.|||||||||||.|||||||
Sbjct  474  CTGCACCATGAGTGTAGACCGCTACATTGCCGTCTGCCACCCGGTCAAGGCCCTGGATTTCCGTACCCCCCGAA  547

Query  740  ATGCCAAAATTATCAATGTCTGCAACTGGATCCTCTCTTCAGCCATTGGTCTTCCTGTAATGTTCATGGCTACA  813
            |||||||||||.||||||||||||||||||||||||||||.|||||||||||.||.||||||||||||||.||.
Sbjct  548  ATGCCAAAATTGTCAATGTCTGCAACTGGATCCTCTCTTCTGCCATTGGTCTGCCCGTAATGTTCATGGCAACC  621

Query  814  ACAAAATACAGGCAAGGTTCCATAGATTGTACACTAACATTCTCTCATCCAACCTGGTACTGGGAAAACCTGCT  887
            ||||||||||||||.||.|||||||||||.||.||.||.|||||||||||.||.|||||||||||.||||||||
Sbjct  622  ACAAAATACAGGCAGGGGTCCATAGATTGCACCCTCACGTTCTCTCATCCCACATGGTACTGGGAGAACCTGCT  695

Query  888  GAAGATCTGTGTTTTCATCTTCGCCTTCATTATGCCAGTGCTCATCATTACCGTGTGCTATGGACTGATGATCT  961
            .||.||||||||.|||||||||||||||||.|||||.||.||||||||.||.|||||.||||||||||||||||
Sbjct  696  CAAAATCTGTGTCTTCATCTTCGCCTTCATCATGCCGGTCCTCATCATCACTGTGTGTTATGGACTGATGATCT  769

Query  962  TGCGCCTCAAGAGTGTCCGCATGCTCTCTGGCTCCAAAGAAAAGGACAGGAATCTTCGAAGGATCACCAGGATG  1035
            |.||.||||||||||||||||||||.||.|||||||||||||||||||||||.||.||.|||||||||.|||||
Sbjct  770  TACGACTCAAGAGTGTCCGCATGCTGTCGGGCTCCAAAGAAAAGGACAGGAACCTGCGCAGGATCACCCGGATG  843

Query 1036  GTGCTGGTGGTGGTGGCTGTGTTCATCGTCTGCTGGACTCCCATTCACATTTACGTCATCATTAAAGCCTTGGT  1109
            |||||||||||.||||||||.||.||.|||||||||||.|||||.|||||.||.||||||||.|||||..||.|
Sbjct  844  GTGCTGGTGGTCGTGGCTGTATTTATTGTCTGCTGGACCCCCATCCACATCTATGTCATCATCAAAGCACTGAT  917

Query 1110  TACAATCCCAGAAACTACGTTCCAGACTGTTTCTTGGCACTTCTGCATTGCTCTAGGTTACACAAACAGCTGCC  1183
            .||.||.||||||||.||.||||||||||||||.|||||||||||||||||..|.|||||||||||||||||||
Sbjct  918  CACGATTCCAGAAACCACTTTCCAGACTGTTTCCTGGCACTTCTGCATTGCCTTGGGTTACACAAACAGCTGCC  991

Query 1184  TCAACCCAGTCCTTTATGCATTTCTGGATGAAAACTTCAAACGATGCTTCAGAGAGTTCTGTATCCCAACCTCT  1257
            |.||||||||.||||||||.||.|||||||||||||||||||||||.||.|||||||||||.||||||||.||.
Sbjct  992  TGAACCCAGTTCTTTATGCGTTCCTGGATGAAAACTTCAAACGATGTTTTAGAGAGTTCTGCATCCCAACTTCC  1065

Query 1258  TCCAACATTGAGCAACAAAACTCCACTCGAATTCGTCAGAACACTAGAGACCACCCCTCCACGGCCAATACAGT  1331
            ||||..||.||.||.||||||||..|||||||.|||||.||||||||.||.||||||||||||||.||||||||
Sbjct 1066  TCCACAATCGAACAGCAAAACTCTGCTCGAATCCGTCAAAACACTAGGGAACACCCCTCCACGGCTAATACAGT  1139

Query 1332  GGATAGAACTAATCATCAGCTAGAAAATCTGGAAG-CAGAAACTGCTCCGTTGCCC------------------  1386
            ||||.|||||||.||.||||   .||..||||.|| |||         |||.||||                  
Sbjct 1140  GGATCGAACTAACCACCAGC---CAACCCTGGCAGTCAG---------CGTGGCCCAGATCTTTACAGGATATC  1201

Query 1387  --------------------------------------------------------------------------  1386
                                                                                      
Sbjct 1202  CTTCTCCGACTCATGTTGAAAAACCCTGCAAGAGTTGCATGGACAGTGTAGACTGCTACAACAGAAAACAACAG  1275

Query 1387  --------------------------------------------------------------------------  1386
                                                                                      
Sbjct 1276  ACTGGGTCACTCAGAAAAAATAAAAAGAAGAAGAAGAGGAGGAAGAACAAGCAAAATATCCTAGAAGCTGGAAT  1349

Query 1387  -------------------------------------------------------------------------  1386
                                                                                     
Sbjct 1350  ATCTAGAGGAATGAGGAACCTTCTTCCTGATGATGGCCCAAGACAGGAATCCGGGGAAGGCCAGCTTGGCAGG  1422

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.