Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_00310
- Subject:
- NM_001256567.3
- Aligned Length:
- 1509
- Identities:
- 604
- Gaps:
- 831
Alignment
Query 1 ATGAGGCGCGCGCCTTCCCTGGTCCTTTTCTTCCTGGTCGCCCTTTGCGGGCGCGGGAACTGCCGCGTGGCCAA 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGGCGCGCGCCTTCCCTGGTCCTTTTCTTCCTGGTCGCCCTTTGCGGGCGCGGGAACTGCCGCGTGGCCAA 74
Query 75 TGCGGAGGAAAAGCTGATGGACGACCTTCTGAACAAAACCCGTTACAATAACCTGATCCGCCCAGCCACCAGCT 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TGCGGAGGAAAAGCTGATGGACGACCTTCTGAACAAAACCCGTTACAATAACCTGATCCGCCCAGCCACCAGCT 148
Query 149 CCTCACAGCTCATCTCCATCAAGCTGCAGCTCTCCCTGGCCCAGCTTATCAGCGTGAATGAGCGAGAGCAGATC 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CCTCACAGCTCATCTCCATCAAGCTGCAGCTCTCCCTGGCCCAGCTTATCAGCGTGAATGAGCGAGAGCAGATC 222
Query 223 ATGACCACCAATGTCTGGCTGAAACAGGAATGGACTGATTACCGCCTGACCTGGAACAGCTCCCGCTACGAGGG 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ATGACCACCAATGTCTGGCTGAAACAGGAATGGACTGATTACCGCCTGACCTGGAACAGCTCCCGCTACGAGGG 296
Query 297 TGTGAACATCCTGAGGATCCCTGCAAAGCGCATCTGGTTGCCTGACATCGTGCTTTACAACAA--CGCCGACGG 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||..|| |
Sbjct 297 TGTGAACATCCTGAGGATCCCTGCAAAGCGCATCTGGTTGCCTGACATCGTGCTTTACAACAAGTCGTTGA--G 368
Query 369 GACCTATG-----AGGTGTCTGTCTACACCAACTTGATAGTCCGGTCCAACGGCAGCGTCCTGTGGCTGCCCCC 437
||| || |.|||.|| ||.|| |||..|.||||.| .||||||||.||
Sbjct 369 GAC---TGGAAGTACGTGGCT---------------ATGGT--GGTGGACCGGCTG-TTCCTGTGGGTG----- 416
Query 438 TGCCATCTACAAGAGCG-CCTGCAAG--ATTGAGGTGAAGTACTTTCCCTTCGACCAGCAGAACTGCACCCTCA 508
..|||.|....|.||| |||| | |.||.||.| ||.|.||| ||.|| |||||
Sbjct 417 -TTCATGTTTGTGTGCGTCCTG---GGCACTGTGGGG-----CTCTTCCT------------ACCGC-CCCTC- 467
Query 509 AGTTCCGCTCCTGGACCTATGACCACACGGAGATAGACATGGTCCTCATGACGCCCACAGCCAGCATGGATGAC 582
|||| .||||.||| ||||.|
Sbjct 468 --TTCC------AGACCCATG----------------------------------------CAGCTT------- 486
Query 583 TTTACTCCCAGTGGTGAGTGGGACATAGTGGCCCTCCCAGGGAGAAGGACAGTGAACCCACAAGACCCCAGCTA 656
|..||.|||||| ||..|| |||||
Sbjct 487 -----------------------CTGAGGGGCCCT-------------ACGCTG------------CCCAG--- 509
Query 657 CGTGGACGTGACTTACGACTTCATCATCAAGCGCAAGCCTCTGTTCTACACCATCAACCTCATCATCCCCTGCG 730
|||||||.|.|.| ||||||.|
Sbjct 510 ------CGTGACTGAGGGC-----------------------------------------------CCCCTGGG 530
Query 731 TGCTCACCACCTTGCTGGCCATCCTCGTCTTCTACCTGCCATCCGACTGCGGCGAGAAGATGACACTGTGCATC 804
||| ||.||.||||.||||
Sbjct 531 -----------TTG---------------------------------TGGGGTGAGAGGATG------------ 548
Query 805 TCAGTG--CTGCT-GGCACTGACATTCTTCCTGCTGCTCATCTCCAAGATCGTGCCACCCACCTCCCTCGATGT 875
|.|||| |.|.| |||||| ||.|||||.|| |.|..|.|.|||.| .||||.
Sbjct 549 TGAGTGGCCGGGTGGGCACT-------TTGCTGCTTCT----TTCTGGGTTGTGGC------------TGATGA 599
Query 876 GCCTCTCATCGGCAAGTACCTCATGTTCACCATGGTGCTGGTCACCTTCTCCATCGTCACCAGCGTCTGTGTGC 949
|.|.|| |||||..| ||| |.|.||| ||| |||||..|.|||
Sbjct 600 GGCCCT-------AAGTAAAT-ATG-TGAGCAT-----TGG---------CCATCAACCCCA------------ 638
Query 950 TCAATGTGCACCACCGCTCGCCCAGCACCCACA-CCATGGCACCCTGGGTCAAGCGCT-GCTTCCTGCACAAGC 1021
|||| |.||.||||| ||.|||.|| .|.|||| |.| |...|||| .||
Sbjct 639 TCAA-------------------ACCAGCCACAGCCGTGGAAC----AGGCAAG-GATGGGGGCCTG----GGC 684
Query 1022 TGCCTACCTTCCTCTTCATGAAGCGCCCTGGCCCCGACAGCAGCCCGGCCAGAGCCTTCCCGCCCAGCAAGTCA 1095
|| ||||||.
Sbjct 685 TG-------TCCTCTC---------------------------------------------------------- 693
Query 1096 TGCGTGACCAAGCCCGAGGCCACCGCCACCTCCACCAGCCCCTCCAACTTCTATGGGAACTCCATGTACTTTGT 1169
Sbjct 694 -------------------------------------------------------------------------- 693
Query 1170 GAACCCCGCCTCTGCAGCTTCCAAGTCTCCAGCCGGCTCTACCCCGGTGGCTATCCCCAGGGATTTCTGGCTGC 1243
Sbjct 694 -------------------------------------------------------------------------- 693
Query 1244 GGTCCTCTGGGAGGTTCCGACAGGATGTGCAGGAGGCATTAGAAGGTGTCAGCTTCATCGCCCAGCACATGAAG 1317
Sbjct 694 -------------------------------------------------------------------------- 693
Query 1318 AATGACGATGAAGACCAGAGTGTCGTTGAGGACTGGAAGTACGTGGCTATGGTGGTGGACCGGCTGTTCCTGTG 1391
Sbjct 694 -------------------------------------------------------------------------- 693
Query 1392 GGTGTTCATGTTTGTGTGCGTCCTGGGCACTGTGGGGCTCTTCCTACCGCCCCTCTTCCAGACCCATGCAGCTT 1465
Sbjct 694 -------------------------------------------------------------------------- 693
Query 1466 CTGAGGGGCCCTACGCTGCCCAGCGTGAC 1494
Sbjct 694 ----------------------------- 693