Nucleotide Global Alignment

Description

• Query: ccsbBroad304_00499
• Subject: NM_001282967.1
• Aligned Length: 1221
• Identities: 376
• Gaps: 795

Alignment

Query    1  ATGGAGAGTGCAATCACGCTGTGGCAGTTCCTGTTGCAGTTGCTGCTGGATCAGAAACATGAGCATTTGATCTG  74
            ||||||||||||||||||||||||||||||||.|||||.|||||||||||.||||||||||||||..|.|||||
Sbjct    1  ATGGAGAGTGCAATCACGCTGTGGCAGTTCCTCTTGCACTTGCTGCTGGACCAGAAACATGAGCACCTCATCTG  74

Query   75  CTGGACCTCGAACGATGGTGAATTCAAGCTCCTCAAAGCAGAAGAAGTGGCCAAGCTGTGGGGACTCCGAAAAA  148
            ||||||.|||||||||||.||.||||||||||||||.||.|||||||||||||||||||||||.|||||.||.|
Sbjct   75  CTGGACATCGAACGATGGCGAGTTCAAGCTCCTCAAGGCGGAAGAAGTGGCCAAGCTGTGGGGCCTCCGCAAGA  148

Query  149  ACAAAACAAATATGAACTATGATAAGCTGAGCAGAGCCCTGCGATACTATTATGACAAGAACATCATCAAGAAG  222
            ||||.||.||.||||||||.||.||||||||||||||.|||.||||||||||.|||||||              
Sbjct  149  ACAAGACCAACATGAACTACGACAAGCTGAGCAGAGCGCTGAGATACTATTACGACAAGA--------------  208

Query  223  GTGATCGGGCAGAAGTTTGTGTACAAGTTTGTCTCTTTCCCGGAGATCCTGAAGATGGATCCTCACGCGGTGGA  296
                                                                                      
Sbjct  209  --------------------------------------------------------------------------  208

Query  297  GATCAGCCGGGAGAGCCTTCTGCTGCAGGACAGCGACTGCAAGGCGTCTCCGGAGGGCCGCGAGGCCCACAAAC  370
                                                                                      
Sbjct  209  --------------------------------------------------------------------------  208

Query  371  ACGGCCTGGCCGCCCTCAGAAGCACGAGCCGCAACGAATACATCCACTCAGGCCTGTACTCGTCCTTCACCATT  444
                                                                               ||||   
Sbjct  209  -------------------------------------------------------------------CACC---  212

Query  445  AATTCCCTGCAGAACCCACCAGACGCCTTCAAGGCCATCAAGACGGAGAAGCTGGAGGAGCCGCCCGAAGACAG  518
                                                                                      
Sbjct  213  --------------------------------------------------------------------------  212

Query  519  CCCCCCCGTGGAAGAAGTCAGGACTGTGATCAGGTTTGTGACCAATAAAACCGACAAGCACGTCACCAGGCCGG  592
                          ||||  ||||||                                                
Sbjct  213  --------------AAGT--GGACTG------------------------------------------------  222

Query  593  TGGTGTCCCTGCCTTCCACGTCAGAGGCTGCGGCGGCGTCCGCCTTCCTGGCCTCGTCCGTCTCGGCCAAGATC  666
                                                        ||.|||||||                    
Sbjct  223  --------------------------------------------TTTCTGGCCT--------------------  232

Query  667  TCCTCTTTAATGTTGCCAAACGCTGCCAGTATTTCATCCGCCTCACCCTTCTCATCTCGGTCCCCGTCCCTGTC  740
                                                                                      
Sbjct  233  --------------------------------------------------------------------------  232

Query  741  CCCCAACTCACCCCTCCCTTCTGAACACAGAAGCCTCTTCCTGGAGGCCGCCTGCCATGACTCCGATTCCCTGG  814
                                                                                      
Sbjct  233  --------------------------------------------------------------------------  232

Query  815  AGCCCTTGAACCTGTCATCGGGCTCCAAGACCAAGTCTCCATCTCTTCCCCCAAAGGCCAAAAAACCCAAAGGC  888
                                                                                      
Sbjct  233  --------------------------------------------------------------------------  232

Query  889  TTGGAAATCTCAGCGCCCCCGCTGGTGCTCTCCGGCACCGACATCGGCTCCATCGCCCTCAACAGCCCAGCCCT  962
                                                                                      
Sbjct  233  --------------------------------------------------------------------------  232

Query  963  CCCCTCGGGATCCCTCACCCCAGCCTTCTTCACCGCACAGACACCAAATGGATTGCTTCTGACTCCGAGTCCAC  1036
                                                                             |||||||.|
Sbjct  233  -----------------------------------------------------------------CGAGTCCGC  241

Query 1037  TGCTCTCCAGCATACATTTCTGGAGCAGCCTTAGTCCAGTTGCTCCGCTGAGTCCTGCCAGGCTGCAAGGGCCA  1110
            ||||..||||||||||.||||||||||||||||||||.||.||.||.||||||||||||||||||||||||||.
Sbjct  242  TGCTGCCCAGCATACACTTCTGGAGCAGCCTTAGTCCTGTCGCCCCACTGAGTCCTGCCAGGCTGCAAGGGCCG  315

Query 1111  AGCACGCTGTTCCAGTTCCCCACACTGCTTAATGGCCACATGCCAGTGCCAATCCCCAGTCTGGACAGAGCTGC  1184
            |.|||.||.||||||||||||||||||||.||.||.||||||||.|||||..||||||||||||||||||||.|
Sbjct  316  AACACACTTTTCCAGTTCCCCACACTGCTCAACGGTCACATGCCGGTGCCGCTCCCCAGTCTGGACAGAGCTCC  389

Query 1185  TTCTCCAGTACTGCTTTCTTCAAACTCTCAGAAATCC  1221
            .||.|||||.|||||.||..|.|.|||||||||||||
Sbjct  390  ATCCCCAGTTCTGCTGTCCCCCAGCTCTCAGAAATCC  426