Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_00808
- Subject:
- NR_002774.3
- Aligned Length:
- 4409
- Identities:
- 1196
- Gaps:
- 3094
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGCGGGCAGCAGGGCAGCAGTGCAGCAGTGCAGCAGTGCGGTGAGGCGAGGGTGCGAGGCGGCTAAGCAAGGGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGGGCCCGCCGTGGCGAGCCGCTGGGCCGTGTTCCGCCTCCTTTCGGGCTTTCCGCGGGTGTCTGGGGAGGGAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCCGGCCGCGGGCCTCAGGCCGTCCCCCTCCGCAGACCCCTTCTCTTATTCTGAGTCTAACCTATCCGCTGGGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCCTGGAAAGCGATTCTCGCCTGGAGTGGCTTTAGGCAGCGGTGGTGGGGAACGTCCTCTCTCAGGTGCCTGGG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTCCAACCTCCGAGCCCCGGGTTGCTCACGCTTCTCCGGTCCTCTACCCGAAGGCTCGATCCCGCTGGTACAGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGCGGCCAGGCTCCCTGTCTTGGTAGCTGTCCCTCTACCCCCGCCCCATGACCTCTTCTAGACCATTGAAAGAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CATCCAAACCACTTTCCTGCTGCCACTCTTTCCTACCATCCCTCTAAATCACAGTTTCCAGGTGACTTTTCTAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCATGGCTTTTCTCGTTCACTCCTGTTCAAAAATCTTCTCACCAATTTTGTCACCATTTACTCAGCTGAGTGCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGCTTTCTGTCAAGTATTTTACCAATAAATCTCTACTCCACACCACCGACAAGAAATATTTTGGAGCCATTTAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AAAGGAGGAAACGGAAGCTTCTGCCGCTGCCTGATCCTCCATTGCTCCGAGCCGCGCGGGTGCAGCGGGCTGTG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGCCGCGGGCCGAGCCCCGCCGGAGCGCCCGAGAGCCCGCGCGTCCCGGGCGTCCGTCGGGGTCCGAGGTCCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TCCCTCAGGGAGTCCCCGCTCGGCAGCGCTCTCGCGTTTCACGCAGCGGCCGGGGATCTGGGACAGGCGGGGCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCGAGGCCGAGCCTGGCGCTGCCCAGCGGCCGGTGCAGGCCTCAAGCTGGGCCGGGCGGAGGGGAACCGGCGAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TTGAAGCCCCGGGGCCGAAAGCCGGAGCCTGTGGCGGCCGCGGGGGTGGGGAGGGGGGTGGGGCGGCTTCTTGG 1036
Query 1 ---------------------ATGATGGACGTTAACAGCAGCGGCCGCCCGGACCTCTACGGGCACCTCCGCTC 53
.|||||||.||||||||||||||||.|||||||||||||||||.||||.||||
Sbjct 1037 GCAGCGCCACACGGCGGCGCAGTGATGGATGTTAACAGCAGCGGCCACCCGGACCTCTACGGGCGCCTCTGCTC 1110
Query 54 TTTCCTTCTGCCAGAAGTGGGGCGCGGGCTGCCCGACTTGAGCCCCGACGGTGGCGCCGACCCGGTCGCGGGCT 127
||||||.|||||.||.||||||.||.|||||||||||.||||||||||||||||||||||.||||||||||.||
Sbjct 1111 TTTCCTCCTGCCGGAGGTGGGGGGCAGGCTGCCCGACCTGAGCCCCGACGGTGGCGCCGAACCGGTCGCGGTCT 1184
Query 128 CCTGGGCGCCGCACCTGCTGAG----------CGAGGTGACAGCCAGCCCGGCGCCCACCTGGGACGCGCCCCC 191
||.||.|||||||.|||||||| |||||||||.||||||||||||||||||||||||||..||||
Sbjct 1185 CCGGGACGCCGCATCTGCTGAGCGGGGGCCCCCGAGGTGACGGCCAGCCCGGCGCCCACCTGGGACGCAACCCC 1258
Query 192 GGACAATGCCTCCGGCTGTGGGGAACAGATCAACTACGGCAGAGTCGAGAAAGTTGTGATCGGCTCCATCCTGA 265
||.|||||||||||||.|.|||||.||.||||| |..||.|.|||||||||||||||||||||..||||||
Sbjct 1259 GGGCAATGCCTCCGGCCGCGGGGAGCAAATCAA----GAAAGGGCCGAGAAAGTTGTGATCGGCTCTGTCCTGA 1328
Query 266 CGCTCATCACGCTGCTGACGATCGCGGGCAACTGCCTGGTGGTGATCTCCGTGTGCTTCGTCAAGAAGCTCCGC 339
||||||||.|.||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1329 CGCTCATCTCTCTG----CGATCGCGGGCAACTGCCTGGTGGT-ATCTCCGTGTGCTTCGTCAAGAAGCTCCGC 1397
Query 340 CAGCCCTCCAACTACCTGATCGTGTCCCTGGCGCTGGCCGACCTCTCGGTGGCTGTGGCGGTCATGCCCTTCGT 413
|||||||||||||||||||||||||||.|||||||||||.|||||||||||||..|||||||||||||||||.|
Sbjct 1398 CAGCCCTCCAACTACCTGATCGTGTCCATGGCGCTGGCCAACCTCTCGGTGGCCATGGCGGTCATGCCCTTCAT 1471
Query 414 CAGCGTCACCGACCTCATCGGGGGCAAGTGGATCTTTGGACACTTTTTCTGTAATGTCTTCATCGCCATGGACG 487
|||.||||||||||||||||||||||||||||||||||||||||||||||||||.|||| ||.|||||.|.|
Sbjct 1472 CAGTGTCACCGACCTCATCGGGGGCAAGTGGATCTTTGGACACTTTTTCTGTAACGTCT---TCTCCATGAATG 1542
Query 488 TCATGTGCTGCACGGCCTCGATCATGACCCTGTGCGTGATCAGCATTGACAGGTACCTTGGGATCACAAGGCCC 561
||||||||||||||||||.||||.|||||.|||.||||||||||||.|||||||||||||||||||..|.|||.
Sbjct 1543 TCATGTGCTGCACGGCCTGGATCTTGACCTTGTACGTGATCAGCATCGACAGGTACCTTGGGATCATGAAGCCT 1616
Query 562 CTCACATACCCTGTGAGGCAGAATGGGAAATGCATGGCGAAGATGATTCTCTCCGTCTGGCTTCTCTCCGCCTC 635
|||||.||||||.||||||||||.||||||||||||.|||||||||||||.||.|||||.|||||.|||||||.
Sbjct 1617 CTCACGTACCCTATGAGGCAGAAGGGGAAATGCATGACGAAGATGATTCTTTCTGTCTGCCTTCTTTCCGCCTT 1690
Query 636 CATCACCTTACCT-CCACTCTTTGGATGGGCTCAGAATGTAAATGATGATAAGGTGTGCTTGATCAGCCAGGAC 708
..||||.|||||| ||| |.|||||..||||||||||||||||.||||||||||||||||||.||||.||.|||
Sbjct 1691 TGTCACTTTACCTACCA-TTTTTGGTCGGGCTCAGAATGTAAACGATGATAAGGTGTGCTTGGTCAGTCAAGAC 1763
Query 709 TTTGGCTATACGATTTACTCTACCGCAGTGGCATTTTATATCCCCATGTCCGTCATGCTTTTCATGTACTACCA 782
||||||||.|||||||||||.|||||||||||||..|| ||||||||||.|||||||||||||||||||||.||
Sbjct 1764 TTTGGCTACACGATTTACTCCACCGCAGTGGCATCCTA-ATCCCCATGTGCGTCATGCTTTTCATGTACTAACA 1836
Query 783 GATTTACAAGGCTGCCAGGAAGAGTGCTGCCAAACACAAGTTTCCTGGCTTCCCTCGAGTGGAGCCAGACAGC- 855
||||||||||||.||||||||.||.||.|||.||||||.|||.||||||||||||||||||||||||||||||
Sbjct 1837 GATTTACAAGGCCGCCAGGAAAAGCGCGGCCTAACACAGGTTACCTGGCTTCCCTCGAGTGGAGCCAGACAGCA 1910
Query 856 GTCATCGCCCTGAATGGCATAGTGAAGCTCCAGAAGGAGGTGGAAGAGTGTGCAAACCTTTCGAGACTCCTCAA 929
||..||.||||||||||||.|||||||.||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1911 GTAGTCACCCTGAATGGCACAGTGAAGTTCC---AGGAGGTGGAAGAGTGTGCAAACCTTTCGAGACTCCTCAA 1981
Query 930 GCATGAAAGG-AAAAACATCTCCATCTTTAAGCGAGAACAGAAAGCAGCCACCACCCTGGGGATCATCGTCGGG 1002
|||||||||| |||||.|||||||||||||||||..|||||||||||||.||.|||.||||||||||||||.||
Sbjct 1982 GCATGAAAGGAAAAAATATCTCCATCTTTAAGCGGAAACAGAAAGCAGCGACTACCTTGGGGATCATCGTCTGG 2055
Query 1003 GCCTTTACCGTGTGCTGGCTGCCATTTTTCCTCCTCTCGACAGCCAGACCCTTC-ATCTGTGGCACTTCCTGCA 1075
||||..|||.|||||||||.|||.||||||||||| |||||||||||||||| .|||.|||||||.||||||
Sbjct 2056 GCCTCCACCATGTGCTGGCCGCCCTTTTTCCTCCT---GACAGCCAGACCCTTCTGTCTATGGCACTGCCTGCA 2126
Query 1076 GCTGCATCCCACTGTGGGTGGAGAGGACATTTCTGTGGCTAGGCTATGCAAACTCTCTCATTAACCCTTTTATA 1149
|||||||||||||||||||||||||||.|||||..|||||.||||||||||||||||||||||||||||||||.
Sbjct 2127 GCTGCATCCCACTGTGGGTGGAGAGGATATTTCCATGGCTGGGCTATGCAAACTCTCTCATTAACCCTTTTATT 2200
Query 1150 TATGCCTTCTTCAACCGGGACCTGAGGACCACCTATCGCAGCCTGCTCCAGTGCCAGTACCGGAATATCAACCG 1223
|||||||||||||||.||||||||||||||||||||.||||||.|||||||||||||||||.|||||||||||.
Sbjct 2201 TATGCCTTCTTCAACTGGGACCTGAGGACCACCTATTGCAGCCGGCTCCAGTGCCAGTACCAGAATATCAACCA 2274
Query 1224 GAAGCTCTCAGCTGCAGGCATGCATGAAGCCCTGAAGCTTGCTGAGAGGCCAGAGAGACCTGAGTTTGTGCTAC 1297
||..|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 2275 GACACTCTCAGCTGCAGGCATGCATGAAGCCCTGAAGCTTGCTGAGAGGCCAGAGAGACCTGAGTTTGTCCTAC 2348
Query 1298 AAAATGCTGACTACTGTAGAAAAAAAGGTCATGATTCA------------------------------------ 1335
||||..||||||||||||||||||||.|||||||||||
Sbjct 2349 AAAACTCTGACTACTGTAGAAAAAAAAGTCATGATTCATGACTGAAAGAGGGATAATGGAGATGAAATAAACAA 2422
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 2423 GGCAAAATAGAGGTGGAAACAGAAGAAAGTCATTTGCCAAGACTGCAGAATGGAATGCAGCTTCTGTCCTTTCT 2496
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 2497 TAGGATGGCTAAAACGTGACAAACAGCATGACCTGATGTACAACATATCTTATGAGGGAGATGGTGACCTCTCC 2570
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 2571 TTTTTTCTGTGGATCAGTGTTATTGTGTGTTCTCAGTTTAAGATAGCAGATCATCTCAGCAGTAAGCACACTGA 2644
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 2645 CAGAATTGAGTTCCAGAAAGGAAGCAGTTTCAGGTTCTTAGCACATGTCCAAATCCATGCAAGTGGGAGAAAGT 2718
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 2719 TCCAATGCACACTTTCCATGCTTCCGAGTCTAGGTCTCGTGGTGAATATTCAGCAATCATTCATGAGAAAGAAT 2792
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 2793 GTATTTTGTTGTATGACAGAAGGGTTTACCAAGCAAACTGTGGTAAGCATAGTATCGAATATGTTGCATGTCCA 2866
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 2867 TTTTAGAAAACAGAGCCCAGTCATCAGCTAATACAAATGATTTCCCAGAGCAGTGTTTGTTTCAAGCTTCTGTC 2940
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 2941 AAATAGTTTGGCTTTTCTGCAGGGTCCCTGTAACTTCCCCACAAATGTACTTCTTTGTTAATTCACTTATTGTT 3014
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 3015 ATGGTGTGGCTCAGGAACAGGTCTCAGGATGGAGAGCAGCATACAACCTGAACAAAGCTTTTTCTTGTGCTCTG 3088
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 3089 AAGGGTCCTGAGACGTGAGGGGGATGCCTTCCATGAGGATTTTTATCTCAGTGAAGTGCGAGTGGTACCCACCT 3162
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 3163 GTATTGTCATTAACATGATTATTGGCATGTTTTTGACTCTCATTTTTCACAAGGGTGCAGTGGGGCCATGGACC 3236
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 3237 ATCCCATGGGATGGTCCATAACTGTATGTTATATGGAAATAGTGTGGGAATAATGGGTTTTCCATGAAAGGTTG 3310
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 3311 TGATGCTTCTGGAGATGGGGGCATAAACGTGTTCATTCTTGTTGAGCAGCATTGTGTTAAACCAAATTGTGTGA 3384
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 3385 AGTGGAGGTCACCTGGACCACTCCTGGGAAATGCTCCAGAACACCAGTCTGTTCCTTCTAGAAATTTGTTCTCT 3458
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 3459 GTATTTATTTTTATTTTTTATTTTGAGGCAGTGTCTCACCCATCCTGTCTCCCAGGCTGGAGTGCAGTGGTGCG 3532
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 3533 ATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTTAAGCAATTCTCCTGCCTCTGCCTCCCAAGTAGCTGAGAT 3606
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 3607 TACAGGCACCTGCCACCACACCTGGCTAATTTTCGTATTTTTAGTAGAGAAGGAGTTTCACCATGTTGGCCAGG 3680
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 3681 CTGGTCTCAAACTCCTGATCTCAGTTGATCCACCTGCCTTGGACTCCCAAAGTGCTGAGATTACAGGTGTGAGC 3754
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 3755 CACTGTGCCCAGCCTGTTCTCTGTATCTTAAATCAACTCTGTGCCAAAGCAGTTCTGTCCCCTGACTCCCACCC 3828
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 3829 CTACCCACCAAAAAGTGGTAGACATGAAGGGCAGGTAAGGGAACAGAAAATGTCTCCTTGCAGCTATATATATT 3902
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 3903 TTAAACGAACTGTGTAATAAGTATGAGCTAAGGAGACAGAAAGACAGTAGATGAGAAAAGAAGAGTACCTATAC 3976
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 3977 CTACAAGGGGCAAAATGAATGCAATCCTTCATTTGATAAGAGAGAACTGAAAGAGAATATTATTTTTCTACAAT 4050
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 4051 AAAGCAAGCTGTCCTCTCAGGATAAAGTGGAATTTCGACATGGATTATGGACTTCTTCCAACTCCCATTGACAT 4124
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 4125 TGCTTCTTACCACACATGGGGAAGGGCTGCCTTTCCTGAAAGGGGAAGAAGGCACTGTCCTTTCAGACAAAGTT 4198
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 4199 TGTACAAATTCCTGAACTGCAGATTTGCTAATGTGACCGCGTATACTTATATTCATAATTTAAGTGATTGTTTA 4272
Query 1336 -------------------------------------------------------------------------- 1335
Sbjct 4273 TGGTCAGATACATATTGTTAAACTTGAAAATGTTTTATTACATTACATCAAATAAAGTCTATTTGTAGCTGAAA 4346
Query 1336 ------------------------------------------- 1335
Sbjct 4347 AAACTAAAAATAATAAAAAGGAGGAAACTGAGGCTTAAAACAA 4389
