Nucleotide Global Alignment

Description

Query:
ccsbBroad304_00841
Subject:
NR_040009.2
Aligned Length:
3893
Identities:
1227
Gaps:
2641

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGACGTCAGAGCAGGAAGTGTTTGAGGAAGTCGCGCCGCGCTGCCCGCGTTAAGATTCCCGCATTTTAATGTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTCAGGGGGGTGTCATAGCCCCGGGTTTGGCCGCCCCAGCCCCGCCTTCCCCGCCCCGGGGAGCCCGCCCCCTG  148

Query    1  --------------------------------------ATGAGCTGGTCACCTTCCCTGACAACGCAGACATGT  36
                                                  ||||||||||||||||||||||||||||||||||||
Sbjct  149  CCCCGCGTCCCTGCCGACAGAGTTAGCACGACATCAGTATGAGCTGGTCACCTTCCCTGACAACGCAGACATGT  222

Query   37  GGGGCCTGGGAAATGAAAGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATCAGGAAAC  110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GGGGCCTGGGAAATGAAAGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATCAGGAAAC  296

Query  111  AGGTGAGCAGATTGCCATCAAGCAGTGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGA  184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AGGTGAGCAGATTGCCATCAAGCAGTGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGA  370

Query  185  TCCAGATCATGAGAAGGCTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTG  258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TCCAGATCATGAGAAGGCTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTG  444

Query  259  GCGCCCAATGACCTGCCCCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTT  332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GCGCCCAATGACCTGCCCCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTT  518

Query  333  TGAGAACTGCTGTGGTCTGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACC  406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGAGAACTGCTGTGGTCTGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACC  592

Query  407  TTCATGAAAACAGAATCATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTA  480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TTCATGAAAACAGAATCATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTA  666

Query  481  ATACACAAAATTATTGACCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGAC  554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ATACACAAAATTATTGACCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGAC  740

Query  555  CCTGCAGTACCTGGCCCCAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCA  628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CCTGCAGTACCTGGCCCCAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCA  814

Query  629  CCCTGGCCTTTGAGTGCATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAA  702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CCCTGGCCTTTGAGTGCATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAA  888

Query  703  GTGCGGCAGAAGAGTGAGGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTT  776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GTGCGGCAGAAGAGTGAGGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTT  962

Query  777  ACCCTACCCCAATAATCTTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGC  850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ACCCTACCCCAATAATCTTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGC  1036

Query  851  ACCCCCGACAGAGGGGCACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAAC  924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ACCCCCGACAGAGGGGCACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAAC  1110

Query  925  TTAAAGCTGGTTCATATCTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCT  998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TTAAAGCTGGTTCATATCTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCT  1184

Query  999  GCAGAGCTTGAAGGCCAGAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGG  1072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GCAGAGCTTGAAGGCCAGAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGG  1258

Query 1073  GCCTGGCGTTGATCCCCGATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAG---------------------  1125
            |||||||||||||||||||||||||||||||||||||||||||||||||||||                     
Sbjct 1259  GCCTGGCGTTGATCCCCGATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAGTAAAATCACCTATGAGACTCA  1332

Query 1126  --------------------------GT------------------GAGCCC-----------TGGCTTCGT--  1142
                                      ||                  ||||||           .|.||||.|  
Sbjct 1333  GATCTCCCCACGGCCCCAACCTGAAAGTGTCAGCTGTATCCTTCAAGAGCCCAAGAGGAATCTCGCCTTCTTCC  1406

Query 1143  ----------------------------ACACACCATCCTGTTTACCTT-----------------GGCT----  1167
                                        .||||.|||||.|   |||.|                 ||||    
Sbjct 1407  AGCTGAGGAAGGTGTGGGGCCAGGTCTGGCACAGCATCCAG---ACCCTGAAGGAAGATTGCAACCGGCTGCAG  1477

Query 1168  ----------GTGCCTCCTGG--GAAACTC------AAC-ACA-----CTTTC--------AGATTTCAATTCT  1209
                      |.|||.||..|  |||.|||      ||| |||     ||.||        |||.|||.||  .
Sbjct 1478  CAGGGACAGCGAGCCGCCATGATGAATCTCCTCCGAAACAACAGCTGCCTCTCCAAAATGAAGAATTCCAT--G  1549

Query 1210  GCTTTGTCATGT------------------AGTCTG---TTAATCACA--CAG--TGCGGAT--ACCTGG----  1252
            ||||  .|||||                  ||| ||   ||..|||.|  |||  |.|.|||  ||||||    
Sbjct 1550  GCTT--CCATGTCTCAGCAGCTCAAGGCCAAGT-TGGATTTCTTCAAAACCAGCATCCAGATTGACCTGGAGAA  1620

Query 1253  --------------CTGGTTTT----------------------------------------------------  1260
                          |.|..|||                                                    
Sbjct 1621  GTACAGCGAGCAAACCGAGTTTGGGATCACATCAGATAAACTGCTGCTGGCCTGGAGGGAAATGGAGCAGGCTG  1694

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1695  TGGAGCTCTGTGGGCGGGAGAACGAAGTGAAACTCCTGGTAGAACGGATGATGGCTCTGCAGACCGACATTGTG  1768

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1769  GACTTACAGAGGAGCCCCATGGGCCGGAAGCAGGGGGGAACGCTGGACGACCTAGAGGAGCAAGCAAGGGAGCT  1842

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1843  GTACAGGAGACTAAGGGAAAAACCTCGAGACCAGCGAACTGAGGGTGACAGTCAGGAAATGGTACGGCTGCTGC  1916

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1917  TTCAGGCAATTCAGAGCTTCGAGAAGAAAGTGCGAGTGATCTATACGCAGCTCAGTAAAACTGTGGTTTGCAAG  1990

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 1991  CAGAAGGCGCTGGAACTGTTGCCCAAGGTGGAAGAGGTGGTGAGCTTAATGAATGAGGATGAGAAGACTGTTGT  2064

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2065  CCGGCTGCAGGAGAAGCGGCAGAAGGAGCTCTGGAATCTCCTGAAGATTGCTTGTAGCAAGGTCCGTGGTCCTG  2138

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2139  TCAGTGGAAGCCCGGATAGCATGAATGCCTCTCGACTTAGCCAGCCTGGGCAGCTGATGTCTCAGCCCTCCACG  2212

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2213  GCCTCCAACAGCTTACCTGAGCCAGCCAAGAAGAGTGAAGAACTGGTGGCTGAAGCACATAACCTCTGCACCCT  2286

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2287  GCTAGAAAATGCCATACAGGACACTGTGAGGGAACAAGACCAGAGTTTCACGGCCCTAGACTGGAGCTGGTTAC  2360

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2361  AGACGGAAGAAGAAGAGCACAGCTGCCTGGAGCAGGCCTCATGATGTGGGGGGACTCGACCCCCTGACATGGGG  2434

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2435  CAGCCCATAGCAGGCCTTGTGCAGTGGGGGGACTCGACCCCCTGACATGGGGCTGCCTGGAGCAGGCCGCGTGA  2508

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2509  CGTGGGGCTGCCTGGCCGCGGCTCTCACATGGTGGTTCCTGCTGCACTGATGGCCCAGGGGTCTCTGGTATCCA  2582

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2583  GATGGAGCTCTCGCTTCCTCAGCAGCTGTGACTTTCACCCAGGACCCAGGACGCAGCCCTCCGTGGGCACTGCC  2656

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2657  GGCGCCTTGTCTGCACACTGGAGGTCCTCCATTACAGAGGCCCAGCGCACATCGCTGGCCCCACAAACGTTCAG  2730

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2731  GGGTACAGCCATGGCAGCTCCTTCCTCTGCCGTGAGAAAAGTGCTTGGAGTACGGTTTGCCACACACGTGACTG  2804

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2805  GACAGTGTCCAATTCAAATCTTTCAGGGCAGAGTCCGAGCAGCGCTTGGTGACAGCCTGTCCTCTCCTGCTCTC  2878

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2879  CAAAGGCCCTGCTCCCTGTCCTCTCTCACTTTACAGCTTGTGTTTCTTCTGGATTCAGCTTCTCCTAAACAGAC  2952

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 2953  AGTTTAATTATAGTTGCGGCCTGGCCCCATCCTCACTTCCTCTTTTTATTTCACTGCTGCTAAAATTGTGTTTT  3026

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3027  TACCTACTACTTTGGTGGTTGTCCTCTTTTCGGCAAAGTTGGAGCGAGTGCCAAGCTCTCCATCTGTGGTCCTT  3100

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3101  TCTGCCAAGAGCGACTCATAGTAACCAGGATGGGAGAGCAGCTGCCTTATTCTGAATCCCAAAAATTACTTGGG  3174

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3175  GGTGATTGTCACAGAGGAGGGACAGAAAGGGTATCTGCTGACCACCAGCCTGCCTACCCATGCCCATGTCTCCA  3248

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3249  TTCCTGCTCAAGCGTGTGTGCTGGGCCGGGGAGTCCCTGTCTCTCACAGCATCTAGCAGTATTATTAAATGGAT  3322

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3323  TCATTTTAAAAATAGCTCCTATATTTTGTAACATGTCTCAAACACTCATACTGGGTTCCACAATCCACTGTTAG  3396

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3397  AATACCTATGGTTAGGGCTTCTGAACTAAAATAATGGAAAATTTTAACAATTTGTATAGTGCCTGGATCATTAC  3470

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3471  TAGTGCCATAACCCTGCTTCTTCAACATTTCACAGAACTTCTCTTTTATATAAAGGCAAGAGCACAAAATGAGT  3544

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3545  TCAGATGATCACAAACAGGTGAGTTTTGTTGGAGAAGAAAGTTGGAGTAGGAGACTTTCACAAGTGGTTTCCAT  3618

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3619  GGAGATAGAATGAAGCATTCTGTGGTCAAGTAAGTTTAGGGAGCTATTCATGTTTCACTTGCTTTGTGGAGATT  3692

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3693  CACACTATGCACTGGGAAAGTATCTGAAAAGTCTTATAATAAAGAAACAGGCTTAACTTTGTGTAAGAACACTG  3766

Query 1261  --------------------------------------------------------------------------  1260
                                                                                      
Sbjct 3767  TTTATCAATGTCATTTGGCTATAGAAACATTTTCTCCTGCTGATTGTGTGTGTGAAACATGTATTAACATTCCA  3840

Query 1261  ---------------------------------------------  1260
                                                         
Sbjct 3841  ATGAACTAGCATTTAATAAAGCACAATTTTGGAAACCCTGGTAAA  3885

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