Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_00841
- Subject:
- NR_040009.2
- Aligned Length:
- 3893
- Identities:
- 1227
- Gaps:
- 2641
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGACGTCAGAGCAGGAAGTGTTTGAGGAAGTCGCGCCGCGCTGCCCGCGTTAAGATTCCCGCATTTTAATGTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTCAGGGGGGTGTCATAGCCCCGGGTTTGGCCGCCCCAGCCCCGCCTTCCCCGCCCCGGGGAGCCCGCCCCCTG 148
Query 1 --------------------------------------ATGAGCTGGTCACCTTCCCTGACAACGCAGACATGT 36
||||||||||||||||||||||||||||||||||||
Sbjct 149 CCCCGCGTCCCTGCCGACAGAGTTAGCACGACATCAGTATGAGCTGGTCACCTTCCCTGACAACGCAGACATGT 222
Query 37 GGGGCCTGGGAAATGAAAGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATCAGGAAAC 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGGGCCTGGGAAATGAAAGAGCGCCTTGGGACAGGGGGATTTGGAAATGTCATCCGATGGCACAATCAGGAAAC 296
Query 111 AGGTGAGCAGATTGCCATCAAGCAGTGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGA 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGGTGAGCAGATTGCCATCAAGCAGTGCCGGCAGGAGCTCAGCCCCCGGAACCGAGAGCGGTGGTGCCTGGAGA 370
Query 185 TCCAGATCATGAGAAGGCTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTG 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCCAGATCATGAGAAGGCTGACCCACCCCAATGTGGTGGCTGCCCGAGATGTCCCTGAGGGGATGCAGAACTTG 444
Query 259 GCGCCCAATGACCTGCCCCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTT 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GCGCCCAATGACCTGCCCCTGCTGGCCATGGAGTACTGCCAAGGAGGAGATCTCCGGAAGTACCTGAACCAGTT 518
Query 333 TGAGAACTGCTGTGGTCTGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACC 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGAGAACTGCTGTGGTCTGCGGGAAGGTGCCATCCTCACCTTGCTGAGTGACATTGCCTCTGCGCTTAGATACC 592
Query 407 TTCATGAAAACAGAATCATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTCATGAAAACAGAATCATCCATCGGGATCTAAAGCCAGAAAACATCGTCCTGCAGCAAGGAGAACAGAGGTTA 666
Query 481 ATACACAAAATTATTGACCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGAC 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ATACACAAAATTATTGACCTAGGATATGCCAAGGAGCTGGATCAGGGCAGTCTTTGCACATCATTCGTGGGGAC 740
Query 555 CCTGCAGTACCTGGCCCCAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCA 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CCTGCAGTACCTGGCCCCAGAGCTACTGGAGCAGCAGAAGTACACAGTGACCGTCGACTACTGGAGCTTCGGCA 814
Query 629 CCCTGGCCTTTGAGTGCATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAA 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCCTGGCCTTTGAGTGCATCACGGGCTTCCGGCCCTTCCTCCCCAACTGGCAGCCCGTGCAGTGGCATTCAAAA 888
Query 703 GTGCGGCAGAAGAGTGAGGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTT 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GTGCGGCAGAAGAGTGAGGTGGACATTGTTGTTAGCGAAGACTTGAATGGAACGGTGAAGTTTTCAAGCTCTTT 962
Query 777 ACCCTACCCCAATAATCTTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGC 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ACCCTACCCCAATAATCTTAACAGTGTCCTGGCTGAGCGACTGGAGAAGTGGCTGCAACTGATGCTGATGTGGC 1036
Query 851 ACCCCCGACAGAGGGGCACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAAC 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ACCCCCGACAGAGGGGCACGGATCCCACGTATGGGCCCAATGGCTGCTTCAAGGCCCTGGATGACATCTTAAAC 1110
Query 925 TTAAAGCTGGTTCATATCTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCT 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TTAAAGCTGGTTCATATCTTGAACATGGTCACGGGCACCATCCACACCTACCCTGTGACAGAGGATGAGAGTCT 1184
Query 999 GCAGAGCTTGAAGGCCAGAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGG 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GCAGAGCTTGAAGGCCAGAATCCAACAGGACACGGGCATCCCAGAGGAGGACCAGGAGCTGCTGCAGGAAGCGG 1258
Query 1073 GCCTGGCGTTGATCCCCGATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAG--------------------- 1125
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GCCTGGCGTTGATCCCCGATAAGCCTGCCACTCAGTGTATTTCAGACGGCAAGTAAAATCACCTATGAGACTCA 1332
Query 1126 --------------------------GT------------------GAGCCC-----------TGGCTTCGT-- 1142
|| |||||| .|.||||.|
Sbjct 1333 GATCTCCCCACGGCCCCAACCTGAAAGTGTCAGCTGTATCCTTCAAGAGCCCAAGAGGAATCTCGCCTTCTTCC 1406
Query 1143 ----------------------------ACACACCATCCTGTTTACCTT-----------------GGCT---- 1167
.||||.|||||.| |||.| ||||
Sbjct 1407 AGCTGAGGAAGGTGTGGGGCCAGGTCTGGCACAGCATCCAG---ACCCTGAAGGAAGATTGCAACCGGCTGCAG 1477
Query 1168 ----------GTGCCTCCTGG--GAAACTC------AAC-ACA-----CTTTC--------AGATTTCAATTCT 1209
|.|||.||..| |||.||| ||| ||| ||.|| |||.|||.|| .
Sbjct 1478 CAGGGACAGCGAGCCGCCATGATGAATCTCCTCCGAAACAACAGCTGCCTCTCCAAAATGAAGAATTCCAT--G 1549
Query 1210 GCTTTGTCATGT------------------AGTCTG---TTAATCACA--CAG--TGCGGAT--ACCTGG---- 1252
|||| .||||| ||| || ||..|||.| ||| |.|.||| ||||||
Sbjct 1550 GCTT--CCATGTCTCAGCAGCTCAAGGCCAAGT-TGGATTTCTTCAAAACCAGCATCCAGATTGACCTGGAGAA 1620
Query 1253 --------------CTGGTTTT---------------------------------------------------- 1260
|.|..|||
Sbjct 1621 GTACAGCGAGCAAACCGAGTTTGGGATCACATCAGATAAACTGCTGCTGGCCTGGAGGGAAATGGAGCAGGCTG 1694
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 1695 TGGAGCTCTGTGGGCGGGAGAACGAAGTGAAACTCCTGGTAGAACGGATGATGGCTCTGCAGACCGACATTGTG 1768
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 1769 GACTTACAGAGGAGCCCCATGGGCCGGAAGCAGGGGGGAACGCTGGACGACCTAGAGGAGCAAGCAAGGGAGCT 1842
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 1843 GTACAGGAGACTAAGGGAAAAACCTCGAGACCAGCGAACTGAGGGTGACAGTCAGGAAATGGTACGGCTGCTGC 1916
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 1917 TTCAGGCAATTCAGAGCTTCGAGAAGAAAGTGCGAGTGATCTATACGCAGCTCAGTAAAACTGTGGTTTGCAAG 1990
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 1991 CAGAAGGCGCTGGAACTGTTGCCCAAGGTGGAAGAGGTGGTGAGCTTAATGAATGAGGATGAGAAGACTGTTGT 2064
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2065 CCGGCTGCAGGAGAAGCGGCAGAAGGAGCTCTGGAATCTCCTGAAGATTGCTTGTAGCAAGGTCCGTGGTCCTG 2138
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2139 TCAGTGGAAGCCCGGATAGCATGAATGCCTCTCGACTTAGCCAGCCTGGGCAGCTGATGTCTCAGCCCTCCACG 2212
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2213 GCCTCCAACAGCTTACCTGAGCCAGCCAAGAAGAGTGAAGAACTGGTGGCTGAAGCACATAACCTCTGCACCCT 2286
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2287 GCTAGAAAATGCCATACAGGACACTGTGAGGGAACAAGACCAGAGTTTCACGGCCCTAGACTGGAGCTGGTTAC 2360
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2361 AGACGGAAGAAGAAGAGCACAGCTGCCTGGAGCAGGCCTCATGATGTGGGGGGACTCGACCCCCTGACATGGGG 2434
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2435 CAGCCCATAGCAGGCCTTGTGCAGTGGGGGGACTCGACCCCCTGACATGGGGCTGCCTGGAGCAGGCCGCGTGA 2508
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2509 CGTGGGGCTGCCTGGCCGCGGCTCTCACATGGTGGTTCCTGCTGCACTGATGGCCCAGGGGTCTCTGGTATCCA 2582
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2583 GATGGAGCTCTCGCTTCCTCAGCAGCTGTGACTTTCACCCAGGACCCAGGACGCAGCCCTCCGTGGGCACTGCC 2656
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2657 GGCGCCTTGTCTGCACACTGGAGGTCCTCCATTACAGAGGCCCAGCGCACATCGCTGGCCCCACAAACGTTCAG 2730
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2731 GGGTACAGCCATGGCAGCTCCTTCCTCTGCCGTGAGAAAAGTGCTTGGAGTACGGTTTGCCACACACGTGACTG 2804
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2805 GACAGTGTCCAATTCAAATCTTTCAGGGCAGAGTCCGAGCAGCGCTTGGTGACAGCCTGTCCTCTCCTGCTCTC 2878
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2879 CAAAGGCCCTGCTCCCTGTCCTCTCTCACTTTACAGCTTGTGTTTCTTCTGGATTCAGCTTCTCCTAAACAGAC 2952
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 2953 AGTTTAATTATAGTTGCGGCCTGGCCCCATCCTCACTTCCTCTTTTTATTTCACTGCTGCTAAAATTGTGTTTT 3026
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3027 TACCTACTACTTTGGTGGTTGTCCTCTTTTCGGCAAAGTTGGAGCGAGTGCCAAGCTCTCCATCTGTGGTCCTT 3100
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3101 TCTGCCAAGAGCGACTCATAGTAACCAGGATGGGAGAGCAGCTGCCTTATTCTGAATCCCAAAAATTACTTGGG 3174
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3175 GGTGATTGTCACAGAGGAGGGACAGAAAGGGTATCTGCTGACCACCAGCCTGCCTACCCATGCCCATGTCTCCA 3248
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3249 TTCCTGCTCAAGCGTGTGTGCTGGGCCGGGGAGTCCCTGTCTCTCACAGCATCTAGCAGTATTATTAAATGGAT 3322
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3323 TCATTTTAAAAATAGCTCCTATATTTTGTAACATGTCTCAAACACTCATACTGGGTTCCACAATCCACTGTTAG 3396
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3397 AATACCTATGGTTAGGGCTTCTGAACTAAAATAATGGAAAATTTTAACAATTTGTATAGTGCCTGGATCATTAC 3470
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3471 TAGTGCCATAACCCTGCTTCTTCAACATTTCACAGAACTTCTCTTTTATATAAAGGCAAGAGCACAAAATGAGT 3544
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3545 TCAGATGATCACAAACAGGTGAGTTTTGTTGGAGAAGAAAGTTGGAGTAGGAGACTTTCACAAGTGGTTTCCAT 3618
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3619 GGAGATAGAATGAAGCATTCTGTGGTCAAGTAAGTTTAGGGAGCTATTCATGTTTCACTTGCTTTGTGGAGATT 3692
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3693 CACACTATGCACTGGGAAAGTATCTGAAAAGTCTTATAATAAAGAAACAGGCTTAACTTTGTGTAAGAACACTG 3766
Query 1261 -------------------------------------------------------------------------- 1260
Sbjct 3767 TTTATCAATGTCATTTGGCTATAGAAACATTTTCTCCTGCTGATTGTGTGTGTGAAACATGTATTAACATTCCA 3840
Query 1261 --------------------------------------------- 1260
Sbjct 3841 ATGAACTAGCATTTAATAAAGCACAATTTTGGAAACCCTGGTAAA 3885
