Nucleotide Global Alignment

Description

Query:
ccsbBroad304_00998
Subject:
XR_002957641.1
Aligned Length:
3045
Identities:
1330
Gaps:
1713

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATCGGACCCAGATGACTGCCTCCTCACTTCCTCCCTCCCGATTCCGCCGCGGCCCCCAAAGACTCTCGGGGTGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCCTTGTCCGCACCGCTTGGAGGGAGTGTGCTCTGAGTTAAGCTGGTCTCTTCTGGTCCTGGAAAAAAATGAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TATTGACAAGGTTGCTGGATCTGCGCAGAAAAGAAAGTGCCACTTAATAAAAAATTTAGCCCGGCAGTGGTACC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GTCTGCAGAGCTTGCTGCCCTTGGACGTTAGCAGGAAGCCTTCGGGGTGCTGTAATCGGCGGGCAGAGGAGAGG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GAGGCCGCGGAATTAAAAGGAACAAAAGCTAGAGCGCCATGCCAAACGTCCCCGGCAAGACCCAGTTAGGCAGG  370

Query    1  -----------ATGGCGCAAAGG--------TACGATGAGCTGCCCCATTACGGCGGGATGGACGGAGTAGGGG  55
                       |||| |.|||.|        |||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGCCGGGAGTGATGG-GAAAATGAACTAGAATACGATGAGCTGCCCCATTACGGCGGGATGGACGGAGTAGGGG  443

Query   56  TTCCCGCTTCCATGTACGGAGACCCTCACGCGCCGCGGCCGATCCCCCCGGTTCACCACCTGAACCACGGGCCG  129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  444  TTCCCGCTTCCATGTACGGAGACCCTCACGCGCCGCGGCCGATCCCCCCGGTTCACCACCTGAACCACGGGCCG  517

Query  130  CCGCTCCACGCCACACAGCACTACGGCGCGCACGCCCCGCACCCCAATGTCATGCCGGCCAGTATGGGATCCGC  203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  518  CCGCTCCACGCCACACAGCACTACGGCGCGCACGCCCCGCACCCCAATGTCATGCCGGCCAGTATGGGATCCGC  591

Query  204  TGTCAACGACGCCTTGAAGCGGGACAAGGACGCGATCTATGGGCACCCGTTGTTTCCTCTGTTAGCTCTGGTCT  277
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  592  TGTCAACGACGCCTTGAAGCGGGACAAGGACGCGATCTATGGGCACCCGTTGTTTCCTCTGTTAGCTCTGGTCT  665

Query  278  TTGAGAAGTGCGAGCTGGCGACCTGCACTCCCCGGGAACCTGGAGTGGCTGGCGGAGACGTCTGCTCCTCCGAC  351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  666  TTGAGAAGTGCGAGCTGGCGACCTGCACTCCCCGGGAACCTGGAGTGGCTGGCGGAGACGTCTGCTCCTCCGAC  739

Query  352  TCCTTCAACGAGGACATCGCGGTCTTCGCCAAGCAGGTTCGCGCCGAAAAGCCACTTTTTTCCTCAAATCCAGA  425
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  740  TCCTTCAACGAGGACATCGCGGTCTTCGCCAAGCAGGTTCGCGCCGAAAAGCCACTTTTTTCCTCAAATCCAGA  813

Query  426  GCTGGACAATTTGATGATACAAGCAATACAAGTACTAAGGTTTCATCTTTTGGAGTTAGAAAAGGTCCACGAAC  499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  814  GCTGGACAATTTGATGATACAAGCAATACAAGTACTAAGGTTTCATCTTTTGGAGTTAGAAAAGGTCCACGAAC  887

Query  500  TGTGCGATAACTTCTGCCACCGATACATTAGCTGTTTGAAGGGGAAAATGCCCATCGACCTCGTCATTGATGAA  573
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  888  TGTGCGATAACTTCTGCCACCGATACATTAGCTGTTTGAAGGGGAAAATGCCCATCGACCTCGTCATTGATGAA  961

Query  574  AGAGACGGCAGCTCCAAGTCAGATCATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCTGACCATAACCCTTC  647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  962  AGAGACGGCAGCTCCAAGTCAGATCATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCTGACCATAACCCTTC  1035

Query  648  TTCTTGGCGAGACCACGATGATGCAACCTCAACCCACTCAGCAGGCACCCCAGGGCCCTCCAGTGGGGGCCATG  721
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036  TTCTTGGCGAGACCACGATGATGCAACCTCAACCCACTCAGCAGGCACCCCAGGGCCCTCCAGTGGGGGCCATG  1109

Query  722  CTTCCCAGAGCGGAGACAACAGCAGTGAGCAAGGGGATGGTTTAGACAACAGTGTAGCTTCACCTGGTACAGGT  795
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110  CTTCCCAGAGCGGAGACAACAGCAGTGAGCAAGGGGATGGTTTAGACAACAGTGTAGCTTCACCTGGTACAGGT  1183

Query  796  GACGATGATGATCCGGATAAGGACAAAAAACGCCAGAAGAAAAGAGGCATTTTCCCCAAAGTAGCAACAAATAT  869
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184  GACGATGATGATCCGGATAAGGACAAAAAACGCCAGAAGAAAAGAGGCATTTTCCCCAAAGTAGCAACAAATAT  1257

Query  870  CATGAGAGCATGGCTCTTCCAGCATCTCACACATCCGTACCCTTCCGAAGAGCAGAAGAAACAGTTAGCGCAAG  943
            |||||||||||||||||||||||||||||||                                           
Sbjct 1258  CATGAGAGCATGGCTCTTCCAGCATCTCACA-------------------------------------------  1288

Query  944  ACACAGGACTTACAATTCTCCAAGTAAACAACTGGTTTATTAATGCCAGAAGAAGAATAGTACAGCCCATGATT  1017
                                              ||||||||||||||||||||||||||||||||||||||||
Sbjct 1289  ----------------------------------GTTTATTAATGCCAGAAGAAGAATAGTACAGCCCATGATT  1328

Query 1018  GACCAGTCAAATCGAGCAGTGAGCCAAGGAGCAGCATATAGTCCAGAGGGTCAGCCCATGGGGAGCTTTGTGTT  1091
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329  GACCAGTCAAATCGAGCAGTGAGCCAAGGAGCAGCATATAGTCCAGAGGGTCAGCCCATGGGGAGCTTTGTGTT  1402

Query 1092  GGATGGTCAGCAACACATGGGGATCCGGCCTGCAG---------------------------------------  1126
            |||||||||||||||||||||||||||||||||||                                       
Sbjct 1403  GGATGGTCAGCAACACATGGGGATCCGGCCTGCAGGACCTATGAGTGGAATGGGCATGAATATGGGCATGGATG  1476

Query 1127  ---------------------------------------------------------GTTTGCAGAGCATGCCA  1143
                                                                     |||||||||||||||||
Sbjct 1477  GGCAATGGCACTACATGTAACCTTCATCATGTAAAGCAATCGCAAAGCAAGGGGGAAGTTTGCAGAGCATGCCA  1550

Query 1144  GGGGACTACGTTTCTCAGGGTGGTCCTATGGGAATGAGTATGGCACAGCCAAGTTACACTCCTCCCCAGATGAC  1217
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1551  GGGGACTACGTTTCTCAGGGTGGTCCTATGGGAATGAGTATGGCACAGCCAAGTTACACTCCTCCCCAGATGAC  1624

Query 1218  CCCACACCCTACTCAATTAAGACATGGACCCCCAATGCATTCATATTTGCCAAGCCATCCCCACCACCCAGCCA  1291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1625  CCCACACCCTACTCAATTAAGACATGGACCCCCAATGCATTCATATTTGCCAAGCCATCCCCACCACCCAGCCA  1698

Query 1292  TGATGATGCACGGAGGACCCCCTACCCACCCTGGAATGACTATGTCAGCACAGAGCCCCACAATGTTAAATTCT  1365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699  TGATGATGCACGGAGGACCCCCTACCCACCCTGGAATGACTATGTCAGCACAGAGCCCCACAATGTTAAATTCT  1772

Query 1366  GTAGATCCCAATGTTGGCGGACAGGTTATGGACATTCATGCCCAA-----------------------------  1410
            |||||||||||||||||||||||||||||||||||||||||||||                             
Sbjct 1773  GTAGATCCCAATGTTGGCGGACAGGTTATGGACATTCATGCCCAATAGTATAAGGGAACTCAAGGGAAAAGGAA  1846

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 1847  ACACACGCAAAAACTATTTTAAGACTTTCTGAACTTTGACCAGATGTTGACACTTAATATGAAATTCCAGACAG  1920

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 1921  CTGTGATTATTTTTTACTTTTGTCATTTTTCATCAAGCAACAGAGGACCAATGCAACAAGAACACAAATGTGAA  1994

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 1995  ATCATGGGCTGACTGAGACAATTCTGTCCATGTAAAGATCCTCTGGAAAAAGACTCCGAGAGTTATAACTACTG  2068

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2069  TAGTATAAATATAGGAACTAAGTTAAACTTGTACATTTCTGTTGATCACGCCGTTATGTTGCCTCAAATAGTTT  2142

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2143  TAGAAGAGAAAAAAAAATATATCCTTGTTTTCCACACTATGTGTGTTGTTCCCAAAAGAATGACTGTTTTGGTT  2216

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2217  CATCAGTGAATTCACCATCCAGGAGAGACTGTGGTATATATTTTAAACCTGTTGGGCCAATGAGAAAAGAACCA  2290

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2291  CACTGGAGATCATGATGAACTTTTGGCTGAACCTCATCACTCGAACTCCAGCTTCAAGAATGTGTTTTCATGCC  2364

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2365  CGGCCTTTGTTCCTCCATAAATGTGTCCTTTAGTTTCAAACAGATCTTTATAGTTCGTGCTTCATAAGCCAATT  2438

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2439  CTTATTATTATTTTTGGGGGACTCTTCTTCAAAGAGCTTGCCAATGAAGATTTAAAGACAGAGCAGGAGCTTCT  2512

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2513  TCCAGGAGTTCTGAGCCTTGGTTGTGGACAAAACAATCTTAAGTTGGGCAGCTTTCCTCAACACAAAAAAAAGT  2586

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2587  TATTAATGGTCATTGAACCATAACTAGGACTTTATCAGAAACTCAAAGCTTGGGGGATAAAAAGGAGCAAGAGA  2660

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2661  ATACTGTAACAAACTTCGTACAGAGTTCGGTCTATTAATTGTTTCATGTTAGATATTCTATGTGTTTACCTCAA  2734

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2735  TTGAAAAAAAAAAGAATGTTTTTGCTAGTATCAGATCTGCTGTGGAATTGGTATTGTATGTCCATGAATTCTTC  2808

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2809  TTTTCTCAGCACGTGTTCCTCACTAGAAGAAAATGCTGTTACCTTTAAGCTTTGTCAAATTTACATTAAAATAC  2882

Query 1411  --------------------------------------------------------------------------  1410
                                                                                      
Sbjct 2883  TTGTATGAGGACTGTGACGTTATGTTAAAAAAAAAAAGGTGTTAAGTCACAAAAAGCGGTAATAAATATTTCAT  2956

Query 1411  -----------  1410
                       
Sbjct 2957  TTTTGATTTTT  2967

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