Construct: ORF ccsbBroad304_00998

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014106.1_s304c1, BRDN0000400849
Derived from:
ccsbBroadEn_00998
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MEIS2 (4212)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_00998
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 4212 MEIS2 Meis homeobox 2 NM_001220482.2 100% 100%
2 human 4212 MEIS2 Meis homeobox 2 NM_170676.5 100% 100%
3 human 4212 MEIS2 Meis homeobox 2 NM_170675.5 98.5% 98.5% 1034_1054del
4 human 4212 MEIS2 Meis homeobox 2 XM_006720523.1 97.5% 97.6% (many diffs)
5 human 4212 MEIS2 Meis homeobox 2 XM_024449927.1 97.2% 97.2% 0_1ins39
6 human 4212 MEIS2 Meis homeobox 2 XM_024449925.1 95.8% 95.8% 0_1ins39;995_1015del
7 human 4212 MEIS2 Meis homeobox 2 XM_024449926.1 95.8% 95.8% 0_1ins39;995_1015del
8 human 4212 MEIS2 Meis homeobox 2 NM_170674.5 82.2% 81.1% (many diffs)
9 human 4212 MEIS2 Meis homeobox 2 XM_006720525.1 81.3% 80.3% (many diffs)
10 human 4212 MEIS2 Meis homeobox 2 NM_170677.5 81% 80% (many diffs)
11 human 4212 MEIS2 Meis homeobox 2 XM_006720524.1 80.1% 79.1% (many diffs)
12 human 4212 MEIS2 Meis homeobox 2 XM_006720526.3 79.9% 79.8% 1_1delAins265;3G>A;770_790del
13 human 4212 MEIS2 Meis homeobox 2 XM_024449928.1 79.9% 79.8% 1_1delAins265;3G>A;770_790del
14 human 4212 MEIS2 Meis homeobox 2 NM_002399.3 79.5% 78.4% (many diffs)
15 human 4212 MEIS2 Meis homeobox 2 NM_172315.3 78.3% 77.2% (many diffs)
16 human 4212 MEIS2 Meis homeobox 2 XM_024449929.1 78.3% 77.2% (many diffs)
17 human 4212 MEIS2 Meis homeobox 2 XM_006720527.3 67.9% 67.9% 0_1ins438;596_616del
18 human 4212 MEIS2 Meis homeobox 2 XM_011521591.2 67.9% 67.9% 0_1ins438;596_616del
19 human 4212 MEIS2 Meis homeobox 2 NM_172316.2 63.5% 62.3% (many diffs)
20 human 4212 MEIS2 Meis homeobox 2 XM_017022205.2 63.5% 62.3% (many diffs)
21 human 4212 MEIS2 Meis homeobox 2 XM_006720529.3 50.6% 49.5% (many diffs)
22 human 4212 MEIS2 Meis homeobox 2 XR_002957641.1 43.6% (many diffs)
23 human 4212 MEIS2 Meis homeobox 2 XR_002957640.1 43.3% (many diffs)
24 human 4212 MEIS2 Meis homeobox 2 XR_001751290.2 42.8% (many diffs)
25 human 4212 MEIS2 Meis homeobox 2 NR_051953.2 23.9% (many diffs)
26 mouse 17536 Meis2 Meis homeobox 2 NM_010825.3 95.3% 99.5% (many diffs)
27 mouse 17536 Meis2 Meis homeobox 2 NM_001346041.1 94.4% 98.7% (many diffs)
28 mouse 17536 Meis2 Meis homeobox 2 XM_017316112.1 94.4% 98.7% (many diffs)
29 mouse 17536 Meis2 Meis homeobox 2 NM_001159568.1 93.9% 98.1% (many diffs)
30 mouse 17536 Meis2 Meis homeobox 2 NM_001346038.1 93% 97.2% (many diffs)
31 mouse 17536 Meis2 Meis homeobox 2 XM_017316111.1 93% 97.2% (many diffs)
32 mouse 17536 Meis2 Meis homeobox 2 XM_017316107.1 90.9% 94.8% (many diffs)
33 mouse 17536 Meis2 Meis homeobox 2 XM_017316104.1 89.6% 93.5% (many diffs)
34 mouse 17536 Meis2 Meis homeobox 2 XM_006498864.3 83% 86.6% (many diffs)
35 mouse 17536 Meis2 Meis homeobox 2 NM_001346036.1 82.2% 85.9% (many diffs)
36 mouse 17536 Meis2 Meis homeobox 2 XM_006498865.3 82.2% 85.9% (many diffs)
37 mouse 17536 Meis2 Meis homeobox 2 XM_017316101.1 80.6% 84% (many diffs)
38 mouse 17536 Meis2 Meis homeobox 2 XM_011239336.2 79.6% 83% (many diffs)
39 mouse 17536 Meis2 Meis homeobox 2 XM_011239337.2 79.6% 83% (many diffs)
40 mouse 17536 Meis2 Meis homeobox 2 NM_001136072.2 77.9% 81.1% (many diffs)
41 mouse 17536 Meis2 Meis homeobox 2 NM_001159570.2 77% 80.3% (many diffs)
42 mouse 17536 Meis2 Meis homeobox 2 NM_001159567.1 76.8% 80% (many diffs)
43 mouse 17536 Meis2 Meis homeobox 2 NM_001159569.2 75.9% 79.1% (many diffs)
44 mouse 17536 Meis2 Meis homeobox 2 XM_006498871.3 74.3% 77.2% (many diffs)
45 mouse 17536 Meis2 Meis homeobox 2 NM_001346047.1 73.2% 76.1% (many diffs)
46 mouse 17536 Meis2 Meis homeobox 2 XM_017316117.1 73.2% 76.1% (many diffs)
47 mouse 17536 Meis2 Meis homeobox 2 NM_001346045.1 68.8% 71.6% (many diffs)
48 mouse 17536 Meis2 Meis homeobox 2 XM_017316114.1 68.8% 71.6% (many diffs)
49 mouse 17536 Meis2 Meis homeobox 2 NM_001346044.1 67.1% 69.9% (many diffs)
50 mouse 17536 Meis2 Meis homeobox 2 XM_017316113.1 67.1% 69.9% (many diffs)
51 mouse 17536 Meis2 Meis homeobox 2 XM_017316109.1 65.9% 68.4% (many diffs)
52 mouse 17536 Meis2 Meis homeobox 2 XM_017316108.1 65% 67.6% (many diffs)
53 mouse 17536 Meis2 Meis homeobox 2 NM_001346056.1 59.8% 62.3% (many diffs)
54 mouse 17536 Meis2 Meis homeobox 2 NM_001346053.1 58.9% 61.4% (many diffs)
55 mouse 17536 Meis2 Meis homeobox 2 NM_001346055.1 58.9% 61.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1476
ORF length:
1410
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc gcaaaggtac gatgagctgc cccattacgg cgggatggac ggagtagggg
121ttcccgcttc catgtacgga gaccctcacg cgccgcggcc gatccccccg gttcaccacc
181tgaaccacgg gccgccgctc cacgccacac agcactacgg cgcgcacgcc ccgcacccca
241atgtcatgcc ggccagtatg ggatccgctg tcaacgacgc cttgaagcgg gacaaggacg
301cgatctatgg gcacccgttg tttcctctgt tagctctggt ctttgagaag tgcgagctgg
361cgacctgcac tccccgggaa cctggagtgg ctggcggaga cgtctgctcc tccgactcct
421tcaacgagga catcgcggtc ttcgccaagc aggttcgcgc cgaaaagcca cttttttcct
481caaatccaga gctggacaat ttgatgatac aagcaataca agtactaagg tttcatcttt
541tggagttaga aaaggtccac gaactgtgcg ataacttctg ccaccgatac attagctgtt
601tgaaggggaa aatgcccatc gacctcgtca ttgatgaaag agacggcagc tccaagtcag
661atcatgaaga actttcaggc tcctccacaa atctcgctga ccataaccct tcttcttggc
721gagaccacga tgatgcaacc tcaacccact cagcaggcac cccagggccc tccagtgggg
781gccatgcttc ccagagcgga gacaacagca gtgagcaagg ggatggttta gacaacagtg
841tagcttcacc tggtacaggt gacgatgatg atccggataa ggacaaaaaa cgccagaaga
901aaagaggcat tttccccaaa gtagcaacaa atatcatgag agcatggctc ttccagcatc
961tcacacatcc gtacccttcc gaagagcaga agaaacagtt agcgcaagac acaggactta
1021caattctcca agtaaacaac tggtttatta atgccagaag aagaatagta cagcccatga
1081ttgaccagtc aaatcgagca gtgagccaag gagcagcata tagtccagag ggtcagccca
1141tggggagctt tgtgttggat ggtcagcaac acatggggat ccggcctgca ggtttgcaga
1201gcatgccagg ggactacgtt tctcagggtg gtcctatggg aatgagtatg gcacagccaa
1261gttacactcc tccccagatg accccacacc ctactcaatt aagacatgga cccccaatgc
1321attcatattt gccaagccat ccccaccacc cagccatgat gatgcacgga ggacccccta
1381cccaccctgg aatgactatg tcagcacaga gccccacaat gttaaattct gtagatccca
1441atgttggcgg acaggttatg gacattcatg cccaataccc aactttcttg tacaaagtgg
1501ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
1561ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)