Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01376
- Subject:
- NR_110892.1
- Aligned Length:
- 3222
- Identities:
- 1183
- Gaps:
- 2039
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGACAGAAGTAGTAGGAAGTGAGCTGTTCAGAGGCAGGAGGGTCTATTCTTTGCCAAAGGGGGGACCAGAATT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCCCATGCGAGCTGTTTGAGGACTGGGATGCCGAGAACGCGAGCGATCCGAGCAGGGTTTGTCTGGGCACCGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGGGTAGGATCCGGAACGCATTCGGAAGGCTTTTTGCAAGCATTTACTTGGAAGGAGAACTTGGGATCTTTCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGGAACCCCCCGCCCCGGCTGGATTGGCCGAGCAAGCCTGGAAAATGGTAAATGATCATTTGGATCAATTACAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCTTTTAGCTGGCTTGTCTGTCATAATTCATGATTCGGGGCTGGGAAAAAGACCAACAGCCTACGTGCCAAAAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGGGGCAGAGTTTGATGGAGTTGGGTGGACTTTTCTATGCCATTTGCCTCCACACCTAGAGGATAAGCACTTTT 444
Query 1 -------------------------ATGTTTGACTGTATGGATGTTCTGTCAGTGAGTCCTGGGCAAATCCTGG 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GCAGACATTCAGTGCAAGGGAGATCATGTTTGACTGTATGGATGTTCTGTCAGTGAGTCCTGGGCAAATCCTGG 518
Query 50 ATTTCTACACTGCGAGTCCGTCTTCCTGCATGCTCCAGGAGAAAGCTCTCAAAGCATGCTTCAGTGGATTGACC 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ATTTCTACACTGCGAGTCCGTCTTCCTGCATGCTCCAGGAGAAAGCTCTCAAAGCATGCTTCAGTGGATTGACC 592
Query 124 CAAACCGAATGGCAGCATCGGCACACTGCTCAATCAATTGAAACACAGAGCACCAGCTCTGAGGAACTCGTCCC 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CAAACCGAATGGCAGCATCGGCACACTGCTCAATCAATTGAAACACAGAGCACCAGCTCTGAGGAACTCGTCCC 666
Query 198 AAGCCCCCCATCTCCACTTCCTCCCCCTCGAGTGTACAAACCCTGCTTCGTCTGCCAGGACAAATCATCAGGGT 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGCCCCCCATCTCCACTTCCTCCCCCTCGAGTGTACAAACCCTGCTTCGTCTGCCAGGACAAATCATCAGGGT 740
Query 272 ACCACTATGGGGTCAGCGCCTGTGAGGGATGTAAGGGCTTTTTCCGCAGAAGTATTCAGAAGAATATGATTTAC 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACCACTATGGGGTCAGCGCCTGTGAGGGATGTAAGGGCTTTTTCCGCAGAAGTATTCAGAAGAATATGATTTAC 814
Query 346 ACTTGTCACCGAGATAAGAACTGTGTTATTAATAAAGTCACCAGGAATCGATGCCAATACTGTCGACTCCAGAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 ACTTGTCACCGAGATAAGAACTGTGTTATTAATAAAGTCACCAGGAATCGATGCCAATACTGTCGACTCCAGAA 888
Query 420 GTGCTTTGAAGTGGGAATGTCCAAAGAATCTGTCAGGAATGACAGGAACAAGAAAAAGAAGGAGACTTCGAAGC 493
|||||||||||||||||||||||||||||
Sbjct 889 GTGCTTTGAAGTGGGAATGTCCAAAGAAT--------------------------------------------- 917
Query 494 AAGAATGCACAGAGAGCTATGAAATGACAGCTGAGTTGGACGATCTCACAGAGAAGATCCGAAAAGCTCACCAG 567
Sbjct 918 -------------------------------------------------------------------------- 917
Query 568 GAAACTTTCCCTTCACTCTGCCAGCTGGGTAAATACACCACGAATTCCAGTGCTGACCATCGAGTCCGACTGGA 641
||||||||||||||||||||||||||||||||
Sbjct 918 ------------------------------------------AATTCCAGTGCTGACCATCGAGTCCGACTGGA 949
Query 642 CCTGGGCCTCTGGGACAAATTCAGTGAACTGGCCACCAAGTGCATTATTAAGATCGTGGAGTTTGCTAAACGTC 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 CCTGGGCCTCTGGGACAAATTCAGTGAACTGGCCACCAAGTGCATTATTAAGATCGTGGAGTTTGCTAAACGTC 1023
Query 716 TGCCTGGTTTCACTGGCTTGACCATCGCAGACCAAATTACCCTGCTGAAGGCCGCCTGCCTGGACATCCTGATT 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 TGCCTGGTTTCACTGGCTTGACCATCGCAGACCAAATTACCCTGCTGAAGGCCGCCTGCCTGGACATCCTGATT 1097
Query 790 CTTAGAATTTGCACCAGGTATACCCCAGAACAAGACACCATGACTTTCTCAGACGGCCTTACCCTAAATCGAAC 863
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 CTTAGAATTTGCACCAGGTATACCCCAGAACAAGACACCATGACTTTCTCAGACGGCCTTACCCTAAATCGAAC 1171
Query 864 TCAGATGCACAATGCTGGATTTGGTCCTCTGACTGACCTTGTGTTCACCTTTGCCAACCAGCTCCTGCCTTTGG 937
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 TCAGATGCACAATGCTGGATTTGGTCCTCTGACTGACCTTGTGTTCACCTTTGCCAACCAGCTCCTGCCTTTGG 1245
Query 938 AAATGGATGACACAGAAACAGGCCTTCTCAGTGCCATCTGCTTAATCTGTGGAGACCGCCAGGACCTTGAGGAA 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 AAATGGATGACACAGAAACAGGCCTTCTCAGTGCCATCTGCTTAATCTGTGGAGACCGCCAGGACCTTGAGGAA 1319
Query 1012 CCGACAAAAGTAGATAAGCTACAAGAACCATTGCTGGAAGCACTAAAAATTTATATCAGAAAAAGACGACCCAG 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CCGACAAAAGTAGATAAGCTACAAGAACCATTGCTGGAAGCACTAAAAATTTATATCAGAAAAAGACGACCCAG 1393
Query 1086 CAAGCCTCACATGTTTCCAAAGATCTTAATGAAAATCACAGATCTCCGTAGCATCAGTGCTAAAGGTGCAGAGC 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 CAAGCCTCACATGTTTCCAAAGATCTTAATGAAAATCACAGATCTCCGTAGCATCAGTGCTAAAGGTGCAGAGC 1467
Query 1160 GTGTAATTACCTTGAAAATGGAAATTCCTGGATCAATGCCACCTCTCATTCAAGAAATGCTGGAGAATTCTGAA 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 GTGTAATTACCTTGAAAATGGAAATTCCTGGATCAATGCCACCTCTCATTCAAGAAATGCTGGAGAATTCTGAA 1541
Query 1234 GGACATGAACCCTTGACCCCAAGTTCAAGTGGGAACACAGCAGAGCACAGTCCTAGCATCTCACCCAGCTCAGT 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 GGACATGAACCCTTGACCCCAAGTTCAAGTGGGAACACAGCAGAGCACAGTCCTAGCATCTCACCCAGCTCAGT 1615
Query 1308 GGAAAACAGTGGGGTCAGTCAGTCACCACTCGTGCAA------------------------------------- 1344
|||||||||||||||||||||||||||||||||||||
Sbjct 1616 GGAAAACAGTGGGGTCAGTCAGTCACCACTCGTGCAATAAGACATTTTCTAGCTACTTCAAACATTCCCCAGTA 1689
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 1690 CCTTCAGTTCCAGGATTTAAAATGCAAGAAAAAACATTTTTACTGCTGCTTAGTTTTTGGACTGAAAAGATATT 1763
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 1764 AAAACTCAAGAAGGACCAAGAAGTTTTCATATGTATCAATATATATACTCCTCACTGTGTAACTTACCTAGAAA 1837
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 1838 TACAAACTTTTCCAATTTTAAAAAATCAGCCATTTCATGCAACCAGAAACTAGTTAAAAGCTTCTATTTTCCTC 1911
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 1912 TTTGAACACTCAAGATTGCATGGCAAAGACCCAGTCAAAATGATTTACCCCTGGTTAAGTTTCTGAAGACTTTG 1985
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 1986 TACATACAGAAGTATGGCTCTGTTCTTTCTATACTGTATGTTTGGTGCTTTCCTTTTGTCTTGCATACTCAAAA 2059
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2060 TAACCATGACACCAAGGTTATGAAATAGACTACTGTACACGTCTACCTAGGTTCAAAAAGATAACTGTCTTGCT 2133
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2134 TTCATGGAATAGTCAAGACATCAAGGTAAGGAAACAGGACTATTGACAGGACTATTGTACAGTATGACAAGATA 2207
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2208 AGGCTGAAGATATTCTACTTTAGTTAGTATGGAAGCTTGTCTTTGCTCTTTCTGATGCTCTCAAACTGCATCTT 2281
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2282 TTATTTCATGTTGCCCAGTAAAAGTATACAAATTCCCTGCACTAGCAGAAGAGAATTCTGTATCAGTGTAACTG 2355
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2356 CCAGTTCAGTTAATCAAATGTCATTTGTTCAATTGTTAATGTCACTTTAAATTAAAAGTGGTTTATTACTTGTT 2429
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2430 TAATGACATAACTACACAGTTAGTTAAAAAAAATTTTTTTACAGTAATGATAGCCTCCAAGGCAGAAACACTTT 2503
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2504 TCAGTGTTAAGTTTTTGTTTACTTGTTCACAAGCCATTAGGGAAATTTCATGGGATAATTAGCAGGCTGGTCTA 2577
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2578 CCACCTGGACCATGTAACTCTAGTGTCCTTCCTGATTCATGCCTGATATTGGGATTTTTTTTTCCAGCCTTCTT 2651
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2652 GATGCCAAGGGGCTAATTAATATTAACAACTCCCAAAGAAACAGGCATAGAATCTGCCTCCTTTGACCTTGTTC 2725
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2726 AATCACTATGAAGCAGAGTGAAAGCTGTGGTAGAGTGGTTAACAGATACAAGTGTCAGTTTCTTAGTTCTCATT 2799
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2800 TAAGCACTAGTGGAATTTTTTTTTTTTGATATATTAGCAAGTCTGTGATGTACTTTCACTGGCTCTGTTTGTAC 2873
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2874 ATTGAGATTGTTTGTTTAACAATGCTTTCTATGTTCATATACTGTTTACCTTTTTCCATGGAGTCTCCTGGCAA 2947
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2948 AGAATAAAATATATTTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3021
Query 1345 ---------------------------------------- 1344
Sbjct 3022 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3061
