Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01521
- Subject:
- XR_429911.3
- Aligned Length:
- 4449
- Identities:
- 744
- Gaps:
- 3705
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATATCCGTGCGCCGAGCTGATAAAGGCGCCATTTTGGAGGGGCCGCGGGAGACGTGGTGCCGCTGCGGGCTCGC 74
Query 1 --------------------------------------------------------------ATGTCGGGAGGT 12
||||||||||||
Sbjct 75 TCTGCCGTGCGCTAGGCTTGGTGGGAAGGCCTGTTCTCGAGTCCGCGCTTTTCGTCACCGCCATGTCGGGAGGT 148
Query 13 GGTGTGATTCGTGGCCCCGCAGGGAACAACGATTGCCGCATCTACGTGGGTAACTTACCTCCAGACATCCGAAC 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GGTGTGATTCGTGGCCCCGCAGGGAACAACGATTGCCGCATCTACGTGGGTAACTTACCTCCAGACATCCGAAC 222
Query 87 CAAGGACATTGAGGACGTGTTCTACAAATACGGCGCTATCCGCGACATCGACCTCAAGAATCGCCGCGGGGGAC 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CAAGGACATTGAGGACGTGTTCTACAAATACGGCGCTATCCGCGACATCGACCTCAAGAATCGCCGCGGGGGAC 296
Query 161 CGCCCTTCGCCTTCGTTGAGTTCGAGGACCCGCGAGACGCGGAAGACGCGGTGTATGGTCGCGACGGCTATGAT 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CGCCCTTCGCCTTCGTTGAGTTCGAGGACCCGCGAGACGCGGAAGACGCGGTGTATGGTCGCGACGGCTATGAT 370
Query 235 TACGATGGGTACCGTCTGCGGGTGGAGTTTCCTCGAAGCGGCCGTGGAACAGGCCGAGGCGGCGGCGGGGGTGG 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TACGATGGGTACCGTCTGCGGGTGGAGTTTCCTCGAAGCGGCCGTGGAACAGGCCGAGGCGGCGGCGGGGGTGG 444
Query 309 AGGTGGCGGAGCTCCCCGAGGTCGCTATGGCCCCCCATCCAGGCGGTCTGAAAACAGAGTGGTTGTCTCTGGAC 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AGGTGGCGGAGCTCCCCGAGGTCGCTATGGCCCCCCATCCAGGCGGTCTGAAAACAGAGTGGTTGTCTCTGGAC 518
Query 383 TGCCTCCAAGTGGAAGTTGGCAGGATTTAAAGGATCACATGCGTGAAGCAGGTGATGTATGTTATGCTGATGTT 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGCCTCCAAGTGGAAGTTGGCAGGATTTAAAGGATCACATGCGTGAAGCAGGTGATGTATGTTATGCTGATGTT 592
Query 457 TACCGAGATGGCACTGGTGTCGTGGAGTTTGTACGGAAAGAAGATATGACCTATGCAGTTCGAAAACTGGATAA 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TACCGAGATGGCACTGGTGTCGTGGAGTTTGTACGGAAAGAAGATATGACCTATGCAGTTCGAAAACTGGATAA 666
Query 531 CACTAAGTTTAGATCTCATGAGGGAGAAACTGCCTACATCCGGGTTAAAGTTGATGGGCCCAGAAGTCCAAGTT 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CACTAAGTTTAGATCTCATGAGGGAGAAACTGCCTACATCCGGGTTAAAGTTGATGGGCCCAGAAGTCCAAGTT 740
Query 605 ATGGAAGATCTCGATCTCGAAGCCGTAGTCGTAGCAGAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCAGTTAC 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATGGAAGATCTCGATCTCGAAGCCGTAGTCGTAGCAGAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCAGTTAC 814
Query 679 TCCCCAAGGAGAAGCAGAGGATCACCACGCTATTCTCCCCGTCATAGCAGATCTCGCTCTCGTACA-------- 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TCCCCAAGGAGAAGCAGAGGATCACCACGCTATTCTCCCCGTCATAGCAGATCTCGCTCTCGTACATAAGATGA 888
Query 745 -------------------------------------------------------------------------- 744
Sbjct 889 TTGGTGACACTTTTTGTAGAACCCATGTTGTATACAGTTTTCCTTTATTCAGTACAATCTTTTCATTTTTTAAT 962
Query 745 -------------------------------------------------------------------------- 744
Sbjct 963 TCAAACTGTTTTGTTCAGAATGGGCTAAAGTGTTGAATTGCATTCTTGTAATATCCCCTTGCTCCTAACATCTA 1036
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1037 CATTCCCTTCGTGTCTTTGATAAATTGTATTTTAAGTGATGTCATAGACAGGATTGTTTAAATTTAGTTAACTC 1110
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1111 CATACTCTTCAGACTGTGATATTGTGTAAATGTCTATCTGCCCTGGTTTGTGTGAACTGGGATGTTGGGGGTGT 1184
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1185 TTGTGGTTATCTTACCTGGGGAAGTTCTTATGTTTATCTTGCTTTTCATGTGTCTTTCTGTAGACATATCTGAA 1258
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1259 GAGATGGATTAAGAATGCTTTGGATTAAGGATTGTGGAGCACATTTCAATCATTTTAGGATTGTCAAAAGGAGG 1332
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1333 ATTGAGGAGGATCAGATCAATAATGGAGGCAATGGTTTGGATTGGAGAGGGCTCACTGGATCCCAATCCTTGGA 1406
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1407 GCTGGATCATTGGATTCAAATCATAATGTGGATAGGATAGGGAGGATGAATTACCAGGATTCATGGAGCGGGAT 1480
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1481 CAGATTACCAGGAACATAGGAGTGGATTCCTGCCCCAACCAAACCGCATTCGTGTGGATTTTTTTATTCAACTT 1554
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1555 AATTGGCTATTCCAAAGATTTTTTTTTTCCTATTTTTGACGATTGGAGCCCTTAAGATGCACGATGGAATTGTG 1628
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1629 TTTTGCGTTTTTTGGTAAAAGGAGCAAAGCGAGGACCTGGAGATAAACGCTGGAGCAATCTCCTTGGAAGGATT 1702
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1703 CAGCACGAGTAGATGGTAAACATTTAAAGGGGAAAGGGGGGGTTTGTTTAAAATAGTAAATCAGTAAGTCACTT 1776
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1777 CTAAATTTAAAGAAAACAAAATTGGAGTTGAAGAATAAGTAGGTTTCCAATTGGCTATTGCCGTTTTCTTTGAA 1850
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1851 AAAATAAACATTTTTTAAAAAACTATGCATGGTTGTCCTTTTTCCTCTTCATGTAAGATTCTAACTGGGTCTAT 1924
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1925 CAGTTAATCTTTAAATTGTTAAGTAAGATAAGATTTTGACTCTTGTGTTAATGTGTTAGCAAATTAAAAGTTCT 1998
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1999 TAAAAGGCAATCTAATGGTATTAGCCATCTTTTATTGTTAATTGTAAAAGTCTTCAGGGGAAAGCAAAAGGGGA 2072
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2073 GAATAAGGCATTTGTGTATGTAACTTGGTAAATGACGGTGGGGGATGGATCTAGCATCTGAAAGATAAGCTTCT 2146
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2147 CTACTTTGTTATAAAGTGGTTAAAAAACTATAGATGCTGCTTATTTTCTGGTGGTCATAGACAACATAGGCTTT 2220
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2221 TGTGCAAAATTGGTTGATGGCTACTAATGTTCACTTGGAGATAGCTTTTGATATTCTCAATGAAACTCATCTCA 2294
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2295 AAAAAAGGTAAGTATTAAATGTTAACATCAGCACAGATGTATTAGAACTGTTTTTTGTTTTTGAGACAGAGTCT 2368
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2369 CGCTCTGTTCTCCAGACTGGAGGGCAGTGGTGTGATCTAGGCTCACTGCAACCTCCACCCCTGGATTTGAGTGA 2442
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2443 TTCTCGTGCCTCAGTCTCCCAAGTAGCTGAGACTACAAGTGTGTGCCACCCTTGCCCGGCTAATTTTGTATTTT 2516
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2517 TAGTAGAGATGTGGTTTCTCTGTGTTACCCAGGCTGGTCCCAAAACTCCTGGCCTCAAGTGATCTGCCTGCCTT 2590
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2591 GGCCTCCCAAAGTGTTAGGATTACAGGTGTGAGCCACCATGCTCAGCCTGTAGAACTTTTAACCCAAGTCTCAT 2664
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2665 TTCTTTTTTGAAAGGGAAGAGTGCACAAGATTAACTGCTTCTTTGGATGAATCATTGTTAATAAAAAGCTGGGC 2738
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2739 ATTTAGAATTTTGCCTTATAAGCCCTTCTCCAACCATAAGATTATTTTGTACCAAAAACTTTGGTGTTCTCTAC 2812
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2813 CAAAGCAGTTAAAAACTTTTAGCCTGCTACTTCTTGTATTTGTCTACTGACAGCCCCTTGGTACTATTTAGGTT 2886
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2887 GGGGGAGGGGACCTAAAATAAATAGACTTTAACATTTCCCTTGGGTGCTAATCATAGTTGGAAGTTGAATTTAA 2960
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2961 GGTGATTATTTGGGTGACAATTAAAAACCTAAGGAAAACCAGAAATCTTGGTAGTGGAAGAAATGTGTAAGGTC 3034
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3035 ACCCCAATCGGTAGATTTTAATGAACGTTGTGGAATGTTGGGAAGAGGGGATGTTAAGTTGAATGCAGAATTTC 3108
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3109 ACTAAGTACTTAGTGTAAGTTTAAGGATGTAGCTCTTTTTATCTAAGAATTCAATGTAATGGCCAAAAGGCAGA 3182
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3183 TTTACTGTTTAAAAATTTGAATAATTTTACATGACATTCTTGAAATTCTAAGAAGTTTTATGTGTAGAACATTT 3256
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3257 TAAAAATTCATCAGATTATTAAAGGGAAAATAAATGATTAATGATAATTTTGGAAGGTTAATGTGAGCTAGACT 3330
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3331 TAAGTAAACTTTGGTTCATTTGTGTTCATTGAATGTTTTGGAAATGACCAAAAAATGTAAATGGCCTTCACTCA 3404
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3405 AGTTTGAGTGTTTAAAGTTGAAAGATGTGCTCTACTAAAAGTTATAGTAATTCTAACCTCACATTGAAATGAGA 3478
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3479 CAGTATTCCTTGTTATACAGGCTGAATTTGAAGATTAGAGAGGATCTAATGTTTACTTAGGTAAAGGGGCATAG 3552
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3553 GTTTTGTAGTTAAGATGACCAGACAGCTAAAAGCTGTGATGGGAAGTATGGACTGCTCCTATTTATAGTCTCAG 3626
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3627 AAAATGGACCTTTAGGTCTCTATCCGTATTGGCAATTATTAGAAGAAAGTTACACCCTTTTGAAACTACAAAAG 3700
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3701 CTGTCTTGGAATTTCCCCCTCTTCTCCCTATTTATGTCCCCTTAGAATATTTTAGGGAGCCTATAATTATTTTC 3774
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3775 TAACCAAGGAAAAACTTAAGTCTCTTTAAGAAGCAATTACTTTTCATAACATCAGATTGAATAACCCACCTTGC 3848
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3849 TGTTCAGCCCACATCCTACTGGAAACAAAAGGTAAGAAACCCATTTTCTGGTTCTTGATTGTTTGGGTCTGAAT 3922
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3923 TTTGTTTTTAAAACTAAGCTAAGTTTAATGTTTTTTAAAATGCTGTTTGGAATATGAATAGATTCCCCGTAAAA 3996
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3997 TGATTTTTCCTAAGTTTTATGCTTTAGTAAATATTCAGTGCTCACGTCTGTGCATCATAGTGCTTGCGTTTAAT 4070
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4071 ATGATTTATTGTAGAATCTCAACTTTTCTTGGTGTTTGTTGTCTTTGAAACATTGTCTTGGTCATTAGGGCTGG 4144
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4145 TGTTTTCACATTTCTGTGGTCAAGGTGGATTTCTTATGTGTGCCTTTTTGCTTACTTTGTATATGAATTTTGTA 4218
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4219 ATTTAAATTGCAAGTAAGTTATATATATGTATTTACCATAAATAGTATTAAAAGATGAGAAACTGTTAGACTGA 4292
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4293 AGTTCTGTTGTAACATAACCATTATTTCCATCACAGTATGAAGACTGCAAACGCAGAAAACAGATTACAGTCTC 4366
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4367 TTATCCATTTTTTGAAATCCAAAAACTACGAAAACAAAAGATTTTCTGTTGTTGAGCTAATTAAATGTGAACCC 4440
Query 745 --------- 744
Sbjct 4441 TGACCAGAA 4449
