Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_01524
- Subject:
- XR_001750514.2
- Aligned Length:
- 2478
- Identities:
- 813
- Gaps:
- 1665
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATTTTGTGGAGCGCCAGAGCTGCTAAGTGCGTCAGTTGTGGAGTGGCGTAGACGAGTTAAGTCCTGGTCTGCGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGAGGTCGACGACTCCGTCGCAGACTACGGACCTGTCTGGGTCTCAGCCGCCAAAGACCCCGTCCGGAAGTACT 148
Query 1 -----------ATGAGTGGCTGTCGGGTATTCATCGGGAGACTAAATCCAGCGGCCAGGGAGAAGGACGTGGAA 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 AGCCGGACATCATGAGTGGCTGTCGGGTATTCATCGGGAGACTAAATCCAGCGGCCAGGGAGAAGGACGTGGAA 222
Query 64 AGATTCTTCAAGGGATATGGACGGATAAGAGATATTGATCTGAAAAGAGGCTTTGGTTTTGTGGAATTTGAGGA 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AGATTCTTCAAGGGATATGGACGGATAAGAGATATTGATCTGAAAAGAGGCTTTGGTTTTGTGGAATTTGAGGA 296
Query 138 TCCAAGGGATGCAGATGATGCTGTGTATGAGCTTGATGGAAAAGAACTCTGTAGTGAAAGGGTTACTATTGAAC 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCCAAGGGATGCAGATGATGCTGTGTATGAGCTTGATGGAAAAGAACTCTGTAGTGAAAGGGTTACTATTGAAC 370
Query 212 ATGCTAGGGCTCGGTCACGAGGTGGAAGAGGTAGAGGACGATACTCTGACCGTTTTAGTAGTCGCAGACCTCGA 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ATGCTAGGGCTCGGTCACGAGGTGGAAGAGGTAGAGGACGATACTCTGACCGTTTTAGTAGTCGCAGACCTCGA 444
Query 286 AATGATAGACGAAATGCTCCACCTGTAAGAACAGAAAATCGTCTTATAGTTGAGAATTTATCCTCAAGAGTCAG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AATGATAGACGAAATGCTCCACCTGTAAGAACAGAAAATCGTCTTATAGTTGAGAATTTATCCTCAAGAGTCAG 518
Query 360 CTGGC--------------------------------------------------------------------- 364
|||||
Sbjct 519 CTGGCAGCCTGTCTGTGTCGTTGGCCTTATGACGAGGAGTGCCTGTGGGTTATCCTAATCGTTGTCTTGGTCAC 592
Query 365 -------------------------------------------------------------------------- 364
Sbjct 593 TCTTGGTTGGGCCTGGTTGACTTTGCCAGTCAGCTCCTACAGTGATCAGTTGGCCACCTCTAGATCTGTGTTTG 666
Query 365 -------------------------------------------------------------------------- 364
Sbjct 667 CCGGTCTAGACGTTATCGGTGCACTTCCTTGAAGTGCCAGGTTGCAGCGATCCCAGAGCGTTGATAACGTGATC 740
Query 365 -------------------------------------------------------------------------- 364
Sbjct 741 TGATCCCTAAGTTGAGACCTGTCTTCCTGTAACGCTTCCGAATAAGAGGTCCGGTCGAAAAGAGTTGAAAGATA 814
Query 365 -------------------------------------------------------------------------- 364
Sbjct 815 CGAAATTAGGTGGTCGTTGGAATCCTGATCGCAGTAAAGTGGTCCTTGGTAACTGCTCGAGTAGAACATGTCTG 888
Query 365 -------------------------------------------------------------------------- 364
Sbjct 889 CATCCGCCAATAGTCCGCTAATAGGGAGGGCTGTGCGATTAAAGGCTTCCATCGATTGGGTAGTGTCCTTCAAG 962
Query 365 -------------------------------------------------------------------------- 364
Sbjct 963 TGGGTGGCGAAGAGCCAGTCGGGCATATGTCATGAAGGTTTCTCCGACCGATTAATGGTTTGCTGCTTGACTAG 1036
Query 365 -------------------------------------------------------------------------- 364
Sbjct 1037 CCTAGGGAAATAATAATAAAGGTAAAGTAAACTTTTTTAATGACATATGGGGCACAAAATAACTGGTGTCTTGT 1110
Query 365 -------------------------------------------------------------------------- 364
Sbjct 1111 AAATGTTCTGTTTTTTTAAATAAAACTTCTCTACTTTAGTCTTTACTTTAAAAATATGTACTGTTTCCTTTTTT 1184
Query 365 -------------------------------------------------------------------------- 364
Sbjct 1185 GTTGTTTTTTTGTTTGTTTTTTTTTCTTTTGTACTGAGCTCAGCATAGACTAATACTACCTTAATGTTAAAATC 1258
Query 365 -------------------------------------------------------------------------- 364
Sbjct 1259 TGAATTTCTTTTAGCATTTTGCTTAAAAGCAATATGCTATTTGCTTATTCCGTGCCCTGACATAGATAATTTTT 1332
Query 365 -------------------------------------------------------------------------- 364
Sbjct 1333 GAATTCTGATAGAATACAAGTGTGGTAAATGCCATGTTTGTACTTTATCTAACATCTTCTCTTTCAGTAGTCTT 1406
Query 365 -------------------------------------------------------------------------A 365
|
Sbjct 1407 GTTTTTTTTATATCATGTGATTGTTTGTGTGTCCCCTTTCCTCTTCTTTGCTTAACACAATTATCTTGTGTTAA 1480
Query 366 GGATCTCAAAGATTTCATGAGACAAGCTGGGGAAGTAACGTTTGCGGATGCACACCGACCTAAATTAAATGAAG 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GGATCTCAAAGATTTCATGAGACAAGCTGGGGAAGTAACGTTTGCGGATGCACACCGACCTAAATTAAATGAAG 1554
Query 440 GGGTGGTTGAGTTTGCCTCTTATGGTGACTTAAAGAATGCTATTGAAAAACTTTCTGGAAAGGAAATAAATGGG 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GGGTGGTTGAGTTTGCCTCTTATGGTGACTTAAAGAATGCTATTGAAAAACTTTCTGGAAAGGAAATAAATGGG 1628
Query 514 AGAAAAATAAAATTAATTGAAGGCAGCAAAAGGCACAGTAGGTCAAGAAGCAGGTCTCGATCCCGGACCAGAAG 587
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1629 AGAAAAATAAAATTAATTGAAGGCAGCAAAAGGCAC---AGGTCAAGAAGCAGGTCTCGATCCCGGACCAGAAG 1699
Query 588 TTCCTCTAGGTCTCGTAGCCGATCCCGTTCCCGTAGTCGCAAATCTTACAGCCGGTCAAGAAGCAGGAGCAGGA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700 TTCCTCTAGGTCTCGTAGCCGATCCCGTTCCCGTAGTCGCAAATCTTACAGCCGGTCAAGAAGCAGGAGCAGGA 1773
Query 662 GCCGGAGCCGGAGCAAGTCCCGTTCTGTTAGTAGGTCTCCCGTGCCTGAGAAGAGCCAGAAACGTGGTTCTTCA 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774 GCCGGAGCCGGAGCAAGTCCCGTTCTGTTAGTAGGTCTCCCGTGCCTGAGAAGAGCCAGAAACGTGGTTCTTCA 1847
Query 736 AGTAGATCTAAGTCTCCAGCATCTGTGGATCGCCAGAGGTCCCGGTCCCGATCAAGGTCCAGATCAGTTGACAG 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848 AGTAGATCTAAGTCTCCAGCATCTGTGGATCGCCAGAGGTCCCGGTCCCGATCAAGGTCCAGATCAGTTGACAG 1921
Query 810 TGGCAAT------------------------------------------------------------------- 816
|||||||
Sbjct 1922 TGGCAATTAAACTGTAAATAACTTGCCCTGGGGGCCTTTTTTTAAAAAACAAAAACCACAAAAATTCCCAAACC 1995
Query 817 -------------------------------------------------------------------------- 816
Sbjct 1996 ATACTTGCTAAAAATTCTGGTAAGTATGTGCTTTTCTGTGGGGGTGGGATTTGGAAGGGGGGTTGGGTTGGGCT 2069
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2070 GGATATCTTTGTAGATGTGGACCACCAAGGGGTTGTTGAAAACTAATTGTATTAAATGTCTTTTGATAAGCCTT 2143
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2144 CTGCTCACATTTTTGTGAATGTCTGAAGTATATAGTTTGTGTATATTGACAGAGCTCTTTTATAACTAAAGCAA 2217
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2218 ATTTAATTTTTTTGTACTAGAAAAAAATTTGAACATTTTAGTTCTTGGTTATAAAAATGTTAATTCAGAATTAG 2291
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2292 TTTAATGCCTTAATTAAACTAATTAATAGCTTTGGACACTTAAAAGAGCTCTAAATTTGCTTGTACATAAAGGC 2365
Query 817 -------------------------------------------------------------------------- 816
Sbjct 2366 TTAATTTGTTTTCCTTGTTAGGGTCAAGGGTGTCCTCCACTCTTTAACAGCTGCTGGACAGACACATTAGAGCA 2439
Query 817 ------------------------------------ 816
Sbjct 2440 GCTGTTTGTTATTGATAATAAAATATTATAAAACTA 2475
