Construct: ORF ccsbBroad304_01524

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005435.1_s304c1, BRDN0000409191
Derived from:
ccsbBroadEn_01524
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SRSF5 (6430)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01524
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6430 SRSF5 serine and arginine rich sp... NM_001039465.2 100% 100%
2 human 6430 SRSF5 serine and arginine rich sp... NM_001320214.2 100% 100%
3 human 6430 SRSF5 serine and arginine rich sp... NM_006925.5 100% 100%
4 human 6430 SRSF5 serine and arginine rich sp... XM_005267999.2 99.6% 99.6% 549_550insAGT
5 human 6430 SRSF5 serine and arginine rich sp... XM_005268000.2 99.6% 99.6% 549_550insAGT
6 human 6430 SRSF5 serine and arginine rich sp... XM_017021593.2 99.6% 99.6% 549_550insAGT
7 human 6430 SRSF5 serine and arginine rich sp... XM_011537077.3 87.8% 87.8% 196_197ins99
8 human 6430 SRSF5 serine and arginine rich sp... XM_017021594.2 53.3% 53.3% 0_1ins381
9 human 6430 SRSF5 serine and arginine rich sp... XR_001750508.2 39.6% 1_163del;528_1059del;1512_2058del
10 human 6430 SRSF5 serine and arginine rich sp... XR_001750513.2 39.5% (many diffs)
11 human 6430 SRSF5 serine and arginine rich sp... XR_001750512.1 37.9% 1_258del;623_1154del;1607_2153del
12 human 6430 SRSF5 serine and arginine rich sp... XR_943506.2 32.9% 1_159del;524_1479del;1932_2478del
13 human 6430 SRSF5 serine and arginine rich sp... XR_943505.2 32.8% 1_163del;528_1483del;1936_2482del
14 human 6430 SRSF5 serine and arginine rich sp... XR_001750514.2 32.8% (many diffs)
15 human 6430 SRSF5 serine and arginine rich sp... XR_001750510.2 32.7% (many diffs)
16 human 6430 SRSF5 serine and arginine rich sp... XR_001750509.1 31.6% 1_258del;623_1578del;2031_2577del
17 mouse 20384 Srsf5 serine/arginine-rich splici... NM_001347415.1 92.6% 98.1% (many diffs)
18 mouse 20384 Srsf5 serine/arginine-rich splici... NM_001347416.1 92.6% 98.1% (many diffs)
19 mouse 20384 Srsf5 serine/arginine-rich splici... XM_006515630.3 92.6% 98.1% (many diffs)
20 mouse 20384 Srsf5 serine/arginine-rich splici... NM_001079694.2 92.4% 97.7% (many diffs)
21 mouse 20384 Srsf5 serine/arginine-rich splici... NM_001079695.2 92.4% 97.7% (many diffs)
22 mouse 20384 Srsf5 serine/arginine-rich splici... NM_009159.3 92.4% 97.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
882
ORF length:
816
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag tggctgtcgg gtattcatcg ggagactaaa tccagcggcc agggagaagg
121acgtggaaag attcttcaag ggatatggac ggataagaga tattgatctg aaaagaggct
181ttggttttgt ggaatttgag gatccaaggg atgcagatga tgctgtgtat gagcttgatg
241gaaaagaact ctgtagtgaa agggttacta ttgaacatgc tagggctcgg tcacgaggtg
301gaagaggtag aggacgatac tctgaccgtt ttagtagtcg cagacctcga aatgatagac
361gaaatgctcc acctgtaaga acagaaaatc gtcttatagt tgagaattta tcctcaagag
421tcagctggca ggatctcaaa gatttcatga gacaagctgg ggaagtaacg tttgcggatg
481cacaccgacc taaattaaat gaaggggtgg ttgagtttgc ctcttatggt gacttaaaga
541atgctattga aaaactttct ggaaaggaaa taaatgggag aaaaataaaa ttaattgaag
601gcagcaaaag gcacagtagg tcaagaagca ggtctcgatc ccggaccaga agttcctcta
661ggtctcgtag ccgatcccgt tcccgtagtc gcaaatctta cagccggtca agaagcagga
721gcaggagccg gagccggagc aagtcccgtt ctgttagtag gtctcccgtg cctgagaaga
781gccagaaacg tggttcttca agtagatcta agtctccagc atctgtggat cgccagaggt
841cccggtcccg atcaaggtcc agatcagttg acagtggcaa ttacccaact ttcttgtaca
901aagtggttgg taagcctatc cctaaccctc tcctcggtct cgattctacg tagtaatgag
961ctagcgctaa ccggtggcgc gttaagtcga caatcaacct ctggatta

Download FASTA (ORF) (Full)