Nucleotide Global Alignment

Description

Query:
ccsbBroad304_01718
Subject:
NR_028394.1
Aligned Length:
3596
Identities:
760
Gaps:
2765

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACGTGAGAGGAGACTTCCGGCCACTGCGTTGTAGTCGGCCCGGCTGCAAAGCGTTTTTCTGCAGGCTGTTTTCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGGTTCCCTCGGCCTGTACCTCGCGCACTCCTCTTGCTCCAGGTCCTTCAGTCTCCGCTCGTCTCACCGTAGG  148

Query    1  ----------ATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACC  64
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CTGTGACGACATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACC  222

Query   65  AAAGAAGAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTT  138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AAAGAAGAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTT  296

Query  139  GATGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACAAT  212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GATGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACAAT  370

Query  213  TTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAATTGGATG  286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAATTGGATG  444

Query  287  GTGTCAGACAAAAGATATTCCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCATCGAGCCATT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GTGTCAGACAAAAGATATTCCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCATCGAGCCATT  518

Query  361  ACTACAGGACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTAT  434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  ACTACAGGACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTAT  592

Query  435  GGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATAAAAC--------------  494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct  593  GGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATAAAACTAAGTTTACAGGCA  666

Query  495  ---TCC--CTC-------CTCT---GAT----GC--ACAGGATAAGC-----------AGTTTGGTACT-TGGA  535
               |||  |||       ||||   |||    ||  ||||   ||||           |.|||..|||| |.||
Sbjct  667  AGATCCTACTCACAGAGGCTCTTGGGATCAAGGCTGACAG---AAGCTCCATCTGAAGACTTTTATACTATAGA  737

Query  536  GACTG----AGAG------------------------------------------------------------T  545
            |.|.|    ||||                                                            |
Sbjct  738  GGCAGAAAAAGAGTGATGAATCAAGCACTGGCTTCTAAAGCTTCCGCCCAGATGGGAAGCATATCTCCTCTGCT  811

Query  546  CACA----CCTGTCGA---------------------TTACCTTC--------TGGGA---------------G  571
            ||||    ||||.|.|                     |.|.||||        |||||               |
Sbjct  812  CACATTTCCCTGACCAAAGCCAGTCACATGGCCATCCTCAGCTTCAGAGAGGTTGGGAAGGCATTCCCACTATG  885

Query  572  TGGCTG----------ACT------TAACTGG-----AGAATT-------------------------GATGCG  599
            ||.|||          |||      ||..|||     .|.|||                         ||.|||
Sbjct  886  TGTCTGGATGCCAGCAACTCAGAAATATTTGGCAGCCGGGATTGCTTACCACCTGCAGCGTGCTTTCGGAGGCG  959

Query  600  G------------------------ATGTGTA--TTAACAGTG--TGGGGAATGGGGACATTGATACCCCCTTT  645
            |                        |||.|.|  |..||||.|  ||||  ||.|||   ||       |||||
Sbjct  960  GCGGCTGGCACGGAGGCCGGGCTACATGAGAAGCTCGACAGGGCCTGGG--ATCGGG---TT-------CCTTT  1021

Query  646  -----GAAGTGAGC-CAGTTTTTACGTCAGGTT--TATGATGGGTTTTCATTCATTGG----------CAACAC  701
                 |.||||.|| ||.|.|     ||.||||  .|.||.||||.|       .|||          ||.|||
Sbjct 1022  CCCCAGCAGTGGGCACACTGT-----TCCGGTTCCCAGGAGGGGTGT-------CTGGCGAGGAGTCCCACCAC  1083

Query  702  T-GGA---------------------CCTT---ACGAG----------------------GTTTCTAAGA----  724
            | |||                     ||||   .||||                      |||||.||||    
Sbjct 1084  TCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGTTTCCAAGAGTGC  1157

Query  725  AG---------CTGTATACCT---TGAAA----------CAAAGTTTGG---------CCAAAGTGG----AGA  763
            ||         |||| .||||   |||.|          |..|.|||||         |..|.||||    |||
Sbjct 1158  AGCAGCCCCTACTGT-GACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGCTCAGAGGTGGCACCAGA  1230

Query  764  ATGCTTG------TTA-----------TGCCTTGAAAGT-CAGAGGGTCAGAAATTCCAAAACATATGTTGGCA  819
            .|||.||      |||           .|||.||..||| |.|.|.|.|||      |||.|     |||.|||
Sbjct 1231  TTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAG------CAAGA-----GTTTGCA  1293

Query  820  G--ATG---TGTTTT--------------CAGTT------AAAACAGAAATGATAGATCAAGAAG----AGGGC  864
            |  |||   .|||.|              |||.|      .|..|.|.|..|||.||.||||..|    .||||
Sbjct 1294  GCCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAGGCGTGTCCGGGC  1367

Query  865  A------TTTCT--------------------------------------------------------------  870
            |      |.|||                                                              
Sbjct 1368  AGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTGAGGTCCCCCCAA  1441

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1442  CCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGCTCTGCCGGGGAA  1515

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1516  CGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCAGGAGATGGGAGC  1589

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1590  CAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCGGCCCTTCAGTCTCTTGGCTACAC  1663

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1664  GGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCATTCTTTACCAGAC  1737

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1738  ATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAGCAGCGGCTCAGG  1811

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1812  GGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGCTGAGAAACCGGA  1885

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1886  GGCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAGAATGATGATTAT  1959

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1960  GATAAAGCTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAATCAGCCTGCACTTTCAACTTCC  2033

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2034  TTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCAGGCTGCCTTGCGCCGTGGGG  2107

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2108  CCACTCAGCAGGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCCGAGGCTGTTGGAACCCACTGCT  2181

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2182  CAGGACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCTTCAGGAAAAGCAGCAGCTACAGAAAGAAAT  2255

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2256  CGAAGCTCTCCAAGCAAGGATGTTTGTGCTGGAAGCCAAAGATCAACAGCTGAGAAGGGAAATAGAGGAGCAAG  2329

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2330  AGCAGCAACTCCAGTGGCAGGGCTGCGACCTGACCCCACTGGTGGGCCAGCTGTCCCTGGGTCAGCTGCAGGAG  2403

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2404  GTCAGCAAGGCCTTGCAGGACACCCTGGCCTCAGCCGGTCAGATTCCCTTCCATGCAGAGCCACCGGAAACCAT  2477

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2478  AAGGAGCCTCCAGGAAAGAATAAAATCCCTCAACTTGTCACTTAAAGAAATCACTACTAAGGTGTGTATGAGTG  2551

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2552  AGAAATTCTGCAGCACCCTGAGGAAGAAAGTTAACGATATTGAAACCCAACTACCAGCCTTGCTTGAAGCCAAA  2625

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2626  ATGCATGCCATATCAGGAAACCATTTCTGGACGGCTAAAGACCTCACCGAGGAGATTAGATCATTAACATCAGA  2699

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2700  GAGAGAAGGGCTGGAGGGACTCCTCAGCAAGCTGTTGGTGTTGAGTTCCAGGAATGTCAAAAAGCTGGGAAGTG  2773

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2774  TTAAAGAAGATTACAACAGACTGAGAAGAGAAGTGGAGCACCAGGAGACTGCCTATGGTAGGTAGTGCACAACT  2847

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2848  GTTCCCCGGCAAGATATTGATGATATTTGTTGTGTTTTGTGGCCAGGCAGAATGTTCTGTGCCTTATGTGAACG  2921

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2922  TCACTGTGAAGAGCGTCATGGAGCACATGGCCCTTTTCCTTGGGGACATTTTTGGCAGGTGCCTTGGCAAACCG  2995

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2996  AATGGAATTACTTGTCAGCTTTTGTTTTCATATTCACATGTGACATCTTTTCTTTTTCTGTTCCCTGTCTCAAC  3069

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 3070  CTGTGTTTGCTAATAGCCTTGTTATTATTTAGAGCAGTCTCTCCCTTGGCAAGGTCTTGAGCATTTTCTTTGTG  3143

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 3144  TGACAATTATCTTCCTTTTGTCCCTTGGCTCCGTCTCCTTGTCTGCACAATCATAGACTAAATCAGGCTGATCT  3217

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 3218  GAGAAAATTGAGGGAAGACCATAAAGTGGCTCTTCTATGTGTGGACTTTTCTGAGAGCTTCTTTCCCCAGGAAG  3291

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 3292  GATGATGTAGAAGATGTGAATGCCGCCTTAGCCAAAGTGTCTGCTTGTCAGAGGAGTTCAAGTGTTCCTGTGTT  3365

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 3366  CTTTCCTTTTCCAGTCGTTAGGAGTAACTGAGCTTACTCTGAGATTTGCACCCAGAGGGATGGTCTCAGAAGAC  3439

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 3440  GCTGGTTCAGTGCAAATTGAGATGGTAAAAACTTATTTCTTAAAAAATGGTTCCTAAATAAATGTCATTTACTA  3513

Query  871  --------------------------------------------  870
                                                        
Sbjct 3514  AAACAAATGAAAGAAATATATATATGAATAAATGGCTATATTTT  3557

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