Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02030
- Subject:
- XR_002959355.1
- Aligned Length:
- 2598
- Identities:
- 1241
- Gaps:
- 1322
Alignment
Query 1 ATGTCTGCTGAAGTCATCCATCAGGTTGAAGAAGCACTTGATACAGATG----AGAAGGAGATGCTGCTCTTTT 70
|||.|.| ||.||||.|
Sbjct 1 ------------------------------------------ACACAAGCCATAGCAGGAAA------------ 20
Query 71 TGTGCCGGGATGTTGC-----TATAGATGTGGTTC-CACCTAATGTCAGGGACCTTCTGGATATTTTACGGGAA 138
|.|.||..|||| .|..||.|.| || ||.|||| .||||| ||.|.||| |..
Sbjct 21 ----CAGCGAGCTTGCAGCCTCACCGACGAG--TCTCAACTAA---AAGGGA-CTCCCGGA----------GCT 74
Query 139 AGAGGTAAGCTGTCTGTCGGGGACTTGGCTGAACTGCTCTACAGAGTGA-----GGCGATTTGAC--------- 198
||.||| |||||||.||| ||| |||.||||| |||.|||.|||
Sbjct 75 AGGGGT------------GGGGACTCGGC-------CTC-ACACAGTGAGTGCCGGCTATTGGACTTTTGTCCA 128
Query 199 ----CTGCTCAAACGTATCTTGAAGATGGAC----AGAAAAGCTGT-GGAGA---------------------- 241
|.|||.|.|| ||.|.|||| .||..||.||| |||||
Sbjct 129 GTGACAGCTGAGAC--------AACAAGGACCACGGGAGGAGGTGTAGGAGAGAAGCGCCGCGAACAGCGATCG 194
Query 242 CCCA---------CCTGCT--CAGGAAC--------------CCT-CACCTTG-------TTTC---------- 272
|||| || ||| |||| | ||| ||.|||| .|||
Sbjct 195 CCCAGCACCAAGTCC-GCTTCCAGG--CTTTCGGTTTCTTTGCCTCCATCTTGGGTGCGCCTTCCCGGCGTCTA 265
Query 273 ------------------------------------------------GGACTATAGAGTGCTGATGGCAGAGA 298
|||| ||||||||||||||||||
Sbjct 266 GGGGAGCGAAGGCTGAGGTGGCAGCGGCAGGAGAGTCCGGCCGCGACAGGAC----GAGTGCTGATGGCAGAGA 335
Query 299 TTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATTTTCCTCATGAAGGATTACATGGGCCGAGGCAAG 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 TTGGTGAGGATTTGGATAAATCTGATGTGTCCTCATTAATTTTCCTCATGAAGGATTACATGGGCCGAGGCAAG 409
Query 373 ATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTTGGAGAAACTAAATCTGGTTGCCCCAGATCAACT 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 ATAAGCAAGGAGAAGAGTTTCTTGGACCTTGTGGTTGAGTTGGAGAAACTAAATCTGGTTGCCCCAGATCAACT 483
Query 447 GGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAGACCTGAAGACAAAAATCCAGAAGTACAAGCAGT 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GGATTTATTAGAAAAATGCCTAAAGAACATCCACAGAATAGACCTGAAGACAAAAATCCAGAAGTACAAGCAGT 557
Query 521 CTGTTCAAGGAGCAGGGACAAGTTACAGGAATGTTCTCCAAGCAGCAATCCAAAAGAGTCTCAAGGATCCTTCA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 CTGTTCAAGGAGCAGGGACAAGTTACAGGAATGTTCTCCAAGCAGCAATCCAAAAGAGTCTCAAGGATCCTTCA 631
Query 595 AATAACTTCAGGCTCCATAATGGGAGAAGTAAAGAACAAAGACTTAAGGAACAGCTTGGCGCTCAACAAGAACC 668
|||||||||||| |||||||
Sbjct 632 AATAACTTCAGG-------------------------------------------------------AAGAACC 650
Query 669 AGTGAAGAAATCCATTCAGGAATCAGAAGCTTTTTTGCCTCAGAGCATACCTGAAGAGAGATACAAGATGAAGA 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 AGTGAAGAAATCCATTCAGGAATCAGAAGCTTTTTTGCCTCAGAGCATACCTGAAGAGAGATACAAGATGAAGA 724
Query 743 GCAAGCCCCTAGGAATCTGCCTGATAATCGATTGCATTGGCAATGAGACAGAGCTTCTTCGAGACACCTTCACT 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 GCAAGCCCCTAGGAATCTGCCTGATAATCGATTGCATTGGCAATGAGACAGAGCTTCTTCGAGACACCTTCACT 798
Query 817 TCCCTGGGCTATGAAGTCCAGAAATTCTTGCATCTCAGTATGCATGGTATATCCCAGATTCTTGGCCAATTTGC 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 TCCCTGGGCTATGAAGTCCAGAAATTCTTGCATCTCAGTATGCATGGTATATCCCAGATTCTTGGCCAATTTGC 872
Query 891 CTGTATGCCCGAGCACCGAGACTACGACAGCTTTGTGTGTGTCCTGGTGAGCCGAGGAGGCTCCCAGAGTGTGT 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 CTGTATGCCCGAGCACCGAGACTACGACAGCTTTGTGTGTGTCCTGGTGAGCCGAGGAGGCTCCCAGAGTGTGT 946
Query 965 ATGGTGTGGATCAGACTCACTCAGGGCTCCCCCTGCATCACATCAGGAGGATGTTCATGGGAGATTCATGCCCT 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 ATGGTGTGGATCAGACTCACTCAGGGCTCCCCCTGCATCACATCAGGAGGATGTTCATGGGAGATTCATGCCCT 1020
Query 1039 TATCTAGCAGGGAAGCCAAAGATGTTTTTTATTCAGAACTATGTGGTGTCAGAGGGCCAGCTGGAGGACAGCAG 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TATCTAGCAGGGAAGCCAAAGATGTTTTTTATTCAGAACTATGTGGTGTCAGAGGGCCAGCTGGAGGACAGCAG 1094
Query 1113 CCTCTTGGAGGTGGATGGGCCAGCGATGAAGAATGTGGAATTCAAGGCTCAGAAGCGAGGGCTGTGCACAGTTC 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 CCTCTTGGAGGTGGATGGGCCAGCGATGAAGAATGTGGAATTCAAGGCTCAGAAGCGAGGGCTGTGCACAGTTC 1168
Query 1187 ACCGAGAAGCTGACTTCTTCTGGAGCCTGTGTACTGCGGACATGTCCCTGCTGGAGCAGTCTCACAGCTCACCA 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 ACCGAGAAGCTGACTTCTTCTGGAGCCTGTGTACTGCGGACATGTCCCTGCTGGAGCAGTCTCACAGCTCACCA 1242
Query 1261 TCCCTGTACCTGCAGTGCCTCTCCCAGAAACTGAGACAAGAAAGAAAACGCCCACTCCTGGATCTTCACATTGA 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 TCCCTGTACCTGCAGTGCCTCTCCCAGAAACTGAGACAAGAAAGAAAACGCCCACTCCTGGATCTTCACATTGA 1316
Query 1335 ACTCAATGGCTACATGTATGATTGGAACAGCAGAGTTTCTGCCAAGGAGAAATATTATGTCTGGCTGCAGCACA 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ACTCAATGGCTACATGTATGATTGGAACAGCAGAGTTTCTGCCAAGGAGAAATATTATGTCTGGCTGCAGCACA 1390
Query 1409 CTCTGAGAAAGAAACTTATCCTCTCCTACACA------------------------------------------ 1440
||||||||||||||||||||||||||||||||
Sbjct 1391 CTCTGAGAAAGAAACTTATCCTCTCCTACACATAAGAAACCAAAAGGCTGGGCGTAGTGGCTCACACCTGTAAT 1464
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 1465 CCCAGCACTTTGGGAGGCCAAGGAGGGCAGATCACTTCAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGAG 1538
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 1539 TCTGAAAAGTGTCGAAGAGACAGTTTTCAGGAACAACAAGCAATTATTCCTACTTTCCAAGTTATTTTGATGCC 1612
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 1613 ATGGTGGCTCATACCTATAATCTGAGTACTTTGGGAGGCTGAGGTGGACTGATCACTTGAGCCCAGGAGTTTGA 1686
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 1687 GACCAGCCTGGGCAACATAGCAAGACTCCATCTCTACAAAAAAAGACAAAATTTAGCTGAGCGTGGTGGCGTGT 1760
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 1761 TCCTGTAGTCCCAGCTACTTGGGAGGCTGAAGTGAGTGGATCCCCTGAGCCCAGAGAGGTCAAGGTTGTGATGA 1834
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 1835 GCTGTGATCACACCACTGCACTTCAGCATGGGAGACAGAGTGAGACCCTGTTTCAGAAAAAATAAATAAATAAA 1908
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 1909 ACCACCAGCACCACAAACAACAACAAAAAGTTATTTTGTACTTGTTTTGAGCACAGGACTCCTGAGGGTATCTT 1982
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 1983 TGCATTTAATATTACATAGGGGTGCCAGTGGGAAGTAATGTGTATGCTTGGCCTCATGAGCTAAAACCCTGTGT 2056
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2057 TAATTATGACAGAAGGAAAGTGTGTGAGAGAGATCTTAACTACCTAGCAGCTCTAGCTGCCATCTTGAACCATG 2130
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2131 AAGATACGGGCCACACGTAGGGGTAGCTGGGTAGTGAGCAGCAAGAAGCCTTGTTGGATGAGGGCACGAAGGAG 2204
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2205 CAGAATCACTGGAATCACTGTGTCAGCCCTAATTACCTACCTCTGGACTTTTATGTGAGGGGAAAAAAAATTGA 2278
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2279 CAGTTTATATTTATCTCAACCTAGTTAACCCAAGTGATGCATTGTTATGAGATTAAAATGTTTGGAGGCCGGGT 2352
Query 1441 -------------------------------------------------------------------------- 1440
Sbjct 2353 GCGGTGGCTCACGCCTATAATCCCAGCCCTTTGGGAGGCCAAGGCGGGCGGATCACGAGGTCAGGAGATCAAGA 2426
Query 1441 -------- 1440
Sbjct 2427 CCATCCTG 2434
