Nucleotide Global Alignment

Description

Query:
ccsbBroad304_02088
Subject:
XR_001737540.2
Aligned Length:
3235
Identities:
1936
Gaps:
1228

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGTTGGCCAGGCTGCTCTGGAACTCCTGGCCTCAAGTGATCTGCCACCTCAGCCGCCCAAATGGCTGGGATTA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGGTGTGAGCCACCATGCCAGGCCAGCATTTGGGAAAATTTTATTTCCTGCTTTATGTTTTAGCGTTCTTTGA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTTGACCAGGAGTATTCTAGGTAAGGGTATTGAAATTGCCATTTACTGTGGCAAGCAAAGTGTGTTATGTACAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TATTTGCCTAATTACCTATGTCGTTGAGTCATTGAGAAAATTAAATGAAATGATCAGAACTCATCTTAATGACA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GAGGAGACTCTCCAAACATAATGCAAAGAAGATATAATCCACTGATAAATAATTTTAAGTTGACTTTATTTTTT  370

Query    1  -----------------------------ATGGCACTGTCAAA-------------------------------  14
                                         .|||||.|||.|||                               
Sbjct  371  TTTAACAGGAAGTATTTGTGTTTTTTCAATTGGCATTGTTAAATAATACCACATAAGTGTTTCTTTTACCATTT  444

Query   15  -------GAGGGAGCT---------------------------GGATGAGCTGAAACCATG-GATA--------  45
                   |||||.|.|                           ||..||..||.|...||| ||||        
Sbjct  445  AATATTTGAGGGGGGTAATAGAACATATACAGAAATATGGGTGGGTGGATTTGCATATATGTGATATTTACAGA  518

Query   46  --GAGAAGACA----------------------GTGAAGAGGGTC-CTGGGTTTCTCA-----GAGC-------  82
              || ||||.|                      ||| |||.|.|| ||..||..||||     ||||       
Sbjct  519  AGGA-AAGAAATGGATTTTTTTTGTGTGTGTGTGTG-AGATGTTCTCTCTGTCACTCAGGCTGGAGCGCAGTGG  590

Query   83  ------CTACGGTGGTCACAGCAGC-------------ATTGAACTG-------TG------------------  112
                  || ||||  ||||.|||||             .||.||.||       ||                  
Sbjct  591  TGCGATCT-CGGT--TCACTGCAGCCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTAAGTAG  661

Query  113  -TGGG--GAAGGGCATG-GACA---------------------------AGAAGAAGGCAG-------CC----  144
             ||||  .|..|||||| |.||                           ||.|| ||.|||       ||    
Sbjct  662  CTGGGATTATAGGCATGTGCCACCACGCACGGCTAATTTTTGTATTTTTAGTAG-AGACAGGGTTTCACCATGT  734

Query  145  -GATCA------TCTGAAACCTTTTCTTGA-------TGAT---TCTAC-----TCTCCGA-------------  183
             ||.||      ||||.|||    ||.|||       ||||   .||||     .||||.|             
Sbjct  735  TGACCAGGCTGGTCTGGAAC----TCCTGACCTCAAGTGATCTGCCTACCTTGGCCTCCCAAATTGCTGGGATT  804

Query  184  ------------------------------TTTGT------GGACAA------ACTGTTT----GAGGCT----  207
                                          |||||      || |||      |||.|||    .|||||    
Sbjct  805  ATAGGCGTGAGCCACCGTACCTAGCCTGTTTTTGTTTTTCAGG-CAAGGTCTCACTTTTTTGTCCAGGCTGGAG  877

Query  208  ----GTGGAGGAAG----------------------GCC--------------GAAGCT-----CTAGGCATTC  236
                ||||.|  ||                      |||              ||..||     ||.|||.|.|
Sbjct  878  TTCAGTGGCG--AGATCTTGGCTTACTGCAACCTCTGCCTCCCGGGCTTGAGTGATCCTCCCACCTTGGCTTCC  949

Query  237  CAAGTCTAGCAGTG---ACAGG--AGCAGAAAACGAGAGC-----------------------TAAAG---GAG  279
            ||||  ||||.|.|   |||||  |.||         .||                       |||||   |||
Sbjct  950  CAAG--TAGCTGGGACTACAGGTCACCA---------TGCCTGGCTGATTTTTGTATTTTTTTTAAAGATTGAG  1012

Query  280  -------GTGTT--------TGGTGATG-ACT------CTGA---GATCTCT----------------AAA---  309
                   .||||        ||||..|| |||      ||||   |||| ||                |||   
Sbjct 1013  TTCCACCATGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTGAAATGATC-CTCCTGCCTCAGCCTCCCAAAGTG  1085

Query  310  ---GAATCATCAGGAGTAAAGAAGCGACGAATACCCCG-------------------TTTTGAGGAGGTGGAAG  361
               ||.|.| ||||.||    .|||      ||||.||                   ||||| ||.|||||..|
Sbjct 1086  CTGGACTTA-CAGGCGT----GAGC------TACCACGCCCAGCCAATTATTTTCTTTTTTG-GGGGGTGGGGG  1147

Query  362  A---------------------AGAGCCAGAG---------GTGATC--------------CCTGGGCCTCC--  389
            |                     || ||..|||         |.|.||              |||..||||||  
Sbjct 1148  ATGGAGTCTTGCTCTGTCACTTAG-GCTGGAGTACGGTGGCGCGTTCTCGGCTCACTGCAACCTCTGCCTCCCG  1220

Query  390  --ATCAGAGAGC------CCTG-----GCATGCTGACTAAG------CTCCAGATCAAACAGATGATGGAGGCA  444
              .|||   .||      ||||     ||.|.||||.| ||      ||.||||||||||||||||||||||||
Sbjct 1221  GGTTCA---CGCCATTCTCCTGCCTCAGCCTCCTGAGT-AGCTGGGACTACAGATCAAACAGATGATGGAGGCA  1290

Query  445  GCAACACGACAAATCGAGGAGAGGAAAAAACAGCTGAGCTTCATTAGCCCCCCTACACCTCAGCCAAAGACTCC  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291  GCAACACGACAAATCGAGGAGAGGAAAAAACAGCTGAGCTTCATTAGCCCCCCTACACCTCAGCCAAAGACTCC  1364

Query  519  TTCTTCCTCCCAACCAGAACGACTTCCTATTGGCAACACTATTCAGCCCTCCCAGGCTGCCACTTTCATGAATG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365  TTCTTCCTCCCAACCAGAACGACTTCCTATTGGCAACACTATTCAGCCCTCCCAGGCTGCCACTTTCATGAATG  1438

Query  593  ATGCCATTGAGAAGGCAAGGAAAGCAGCTGAACTGCAAGCTCGAATCCAAGCCCAGCTGGCACTGAAGCCAGGA  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439  ATGCCATTGAGAAGGCAAGGAAAGCAGCTGAACTGCAAGCTCGAATCCAAGCCCAGCTGGCACTGAAGCCAGGA  1512

Query  667  CTCATCGGCAATGCCAACATGGTGGGCCTGGCTAATCTCCATGCCATGGGCATTGCTCCCCCGAAGGTGGAGTT  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513  CTCATCGGCAATGCCAACATGGTGGGCCTGGCTAATCTCCATGCCATGGGCATTGCTCCCCCGAAGGTGGAGTT  1586

Query  741  AAAAGACCAAACGAAACCTACACCACTGATCCTGGATGAGCAAGGGCGCACTGTAGATGCAACAGGCAAGGAGA  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1587  AAAAGACCAAACGAAACCTACACCACTGATCCTGGATGAGCAAGGGCGCACTGTAGATGCAACAGGCAAGGAGA  1660

Query  815  TTGAGCTGACACACCGCATGCCTACTCTGAAAGCCAATATTCGTGCTGTGAAGAGGGAACAATTCAAGCAACAA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661  TTGAGCTGACACACCGCATGCCTACTCTGAAAGCCAATATTCGTGCTGTGAAGAGGGAACAATTCAAGCAACAA  1734

Query  889  CTAAAGGAAAAGCCATCAGAAGACATGGAATCCAATACCTTTTTTGACCCCCGAGTCTCCATTGCCCCTTCCCA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735  CTAAAGGAAAAGCCATCAGAAGACATGGAATCCAATACCTTTTTTGACCCCCGAGTCTCCATTGCCCCTTCCCA  1808

Query  963  GCGCCAGAGACGCACTTTTAAATTCCATGACAAGGGCAAATTTGAGAAGATTGCTCAGCGATTACGGACAAAGG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809  GCGCCAGAGACGCACTTTTAAATTCCATGACAAGGGCAAATTTGAGAAGATTGCTCAGCGATTACGGACAAAGG  1882

Query 1037  CTCAACTGGAGAAGCTACAGGCAGAGATTTCACAAGCAGCTCGAAAAACAGGCATCCATACTTCGACTAGGCTT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883  CTCAACTGGAGAAGCTACAGGCAGAGATTTCACAAGCAGCTCGAAAAACAGGCATCCATACTTCGACTAGGCTT  1956

Query 1111  GCCCTCATTGCTCCTAAGAAGGAGCTAAAGGAAGGAGATATTCCTGAAATTGAGTGGTGGGACTCTTACATAAT  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1957  GCCCTCATTGCTCCTAAGAAGGAGCTAAAGGAAGGAGATATTCCTGAAATTGAGTGGTGGGACTCTTACATAAT  2030

Query 1185  CCCCAATGGCTTTGATCTTACAGAGGAAAATCCCAAGAGAGAAGATTATTTTGGAATCACAAATCTTGTTGAAC  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031  CCCCAATGGCTTTGATCTTACAGAGGAAAATCCCAAGAGAGAAGATTATTTTGGAATCACAAATCTTGTTGAAC  2104

Query 1259  ATCCAGCCCAGCTCAATCCTCCAGTTGACAATGACACACCAGTTACTCTGGGAGTATATCTTACCAAGAAGGAA  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2105  ATCCAGCCCAGCTCAATCCTCCAGTTGACAATGACACACCAGTTACTCTGGGAGTATATCTTACCAAGAAGGAA  2178

Query 1333  CAGAAAAAACTTCGGAGACAAACAAGGAGGGAAGCACAGAAGGAACTACAAGAAAAAGTCAGGCTGGGCCTGAT  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2179  CAGAAAAAACTTCGGAGACAAACAAGGAGGGAAGCACAGAAGGAACTACAAGAAAAAGTCAGGCTGGGCCTGAT  2252

Query 1407  GCCTCCTCCAGAACCCAAAGTGAGAATTTCTAATTTGATGCGAGTATTAGGAACAGAAGCTGTTCAAGACCCCA  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2253  GCCTCCTCCAGAACCCAAAGTGAGAATTTCTAATTTGATGCGAGTATTAGGAACAGAAGCTGTTCAAGACCCCA  2326

Query 1481  CGAAGGTAGAAGCCCACGTCAGAGCTCAGATGGCAAAAAGACAGAA----------------------------  1526
            ||||||||||||||||||||||||||||||||||||||||||||||                            
Sbjct 2327  CGAAGGTAGAAGCCCACGTCAGAGCTCAGATGGCAAAAAGACAGAACCCTGCCTCTGATCTTCAATGCCTTTCT  2400

Query 1527  ------------------------------AGCGCATGAAGAGGCCAACGCTGCCCGAAAACTCACAGCAGAAC  1570
                                          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2401  CACTTGTGGATGTCCTTCCTGTCACGACAGAGCGCATGAAGAGGCCAACGCTGCCCGAAAACTCACAGCAGAAC  2474

Query 1571  AGAGAAAGGTCAAGAAAATTAAAAAGCTTAAAGAAGACATTTCACAGGGGGTACACATATCTGTATATAGAGTT  1644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2475  AGAGAAAGGTCAAGAAAATTAAAAAGCTTAAAGAAGACATTTCACAGGGGGTACACATATCTGTATATAGAGTT  2548

Query 1645  CGAAATTTGAGCAACCCAGCCAAGAAGTTCAAGATTGAAGCCAATGCTGGGCAACTGTACCTGACAGGGGTGGT  1718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2549  CGAAATTTGAGCAACCCAGCCAAGAAGTTCAAGATTGAAGCCAATGCTGGGCAACTGTACCTGACAGGGGTGGT  2622

Query 1719  GGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGGGGGCCCCAAGGCCCAGAAGAAATTTAAGCGTCTTA  1792
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2623  GGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGGGGGCCCCAAGGCCCAGAAGAAATTTAAGCGTCTTA  2696

Query 1793  TGCTGCATCGGATAAAGTGGGATGAACAGACATCTAACACAAAGGGAGATGATGATGAGGAGTCTGATGAGGAA  1866
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2697  TGCTGCATCGGATAAAGTGGGATGAACAGACATCTAACACAAAGGGAGATGATGATGAGGAGTCTGATGAGGAA  2770

Query 1867  GCTGTGAAGAAAACCAACAAATGTGTACTAGTCTGGGAGGGTACAGCCAAAGACCGGAGCTTTGGAGAGATGAA  1940
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2771  GCTGTGAAGAAAACCAACAAATGTGTACTAGTCTGGGAGGGTACAGCCAAAGACCGGAGCTTTGGAGAGATGAA  2844

Query 1941  GTTTAAACAGTGTCCTACAGAGAACATGGCTCGTGAGCATTTCAAAAAGCATGGGGCTGAACACTACTGGGACC  2014
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2845  GTTTAAACAGTGTCCTACAGAGAACATGGCTCGTGAGCATTTCAAAAAGCATGGGGCTGAACACTACTGGGACC  2918

Query 2015  TTGCGCTGAGTGAATCTGTGTTAGAGTCCACTGAT---------------------------------------  2049
            |||||||||||||||||||||||||||||||||||                                       
Sbjct 2919  TTGCGCTGAGTGAATCTGTGTTAGAGTCCACTGATTGAGACTACTGCAAGCCCTTGCCTCTCCTCCCTTGCCTT  2992

Query 2050  --------------------------------------------------------------------------  2049
                                                                                      
Sbjct 2993  TGTCTCTTCAGTCCTCTCACTTATTCTATTTCCCAACCCCCTCCCACTTGTTTGTGTGATCTCAGAACTGTGCC  3066

Query 2050  --------------------------------------------------------------------------  2049
                                                                                      
Sbjct 3067  AAGCAGACACTGGGACAAAGGGAGAATATCTTGCTCCCCTCCTGAGTCAGCCTGGTGTTGCCCTTTATTCCCCT  3140

Query 2050  -----------------------------------------------------  2049
                                                                 
Sbjct 3141  TATGTGCATATGATTAAAGAGTTATTTTTAAACTTGGTGTGATATTTTTCACA  3193

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.