Nucleotide Global Alignment

Description

Query:
ccsbBroad304_02088
Subject:
XR_002958010.1
Aligned Length:
4192
Identities:
2049
Gaps:
2143

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TCCGGTGTAACGTTCGGGCTCCGTCTCAGGGGCTGAAGTTTGTGAGGTGTAGTATTGAGTCCTGTTTGAGCTAT  74

Query    1  --------------------ATGGCACTGTCAAAGAGGGAGCTGGATGAGCTGAAACCATGGATAGAGAAGACA  54
                                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TGTTCTCTTTTTCCTGAAAAATGGCACTGTCAAAGAGGGAGCTGGATGAGCTGAAACCATGGATAGAGAAGACA  148

Query   55  GTGAAGAGGGTCCTGGGTTTCTCAGAGCCTACGGTGGTCACAGCAGCATTGAACTGTGTGGGGAAGGGCATGGA  128
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GTGAAGAGGGTCCTGGGTTTCTCAGAGCCTACGGTGGTCACAGCAGCATTGAACTGTGTGGGGAAGGGCATGGA  222

Query  129  CAAGAAGAAGGCAGCCGATCATCTGAAACCTTTTCTTGATGATTCTACTCTCCGATTTGTGGACAAACTGTTTG  202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CAAGAAGAAGGCAGCCGATCATCTGAAACCTTTTCTTGATGATTCTACTCTCCGATTTGTGGACAAACTGTTTG  296

Query  203  AGGCTGTGGAGGAAGGCCGAAGCTCTAGGCATTCCAAGTCTAGCAGTGACAGGAGCAGAAAACGAGAGCTAAAG  276
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  AGGCTGTGGAGGAAGGCCGAAGCTCTAGGCATTCCAAGTCTAGCAGTGACAGGAGCAGAAAACGAGAGCTAAAG  370

Query  277  GAGGTGTTTGGTGATGACTCTGAGATCTCTAAAGAATCATCAGGAGTAAAGAAGCGACGAATACCCCGTTTTGA  350
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GAGGTGTTTGGTGATGACTCTGAGATCTCTAAAGAATCATCAGGAGTAAAGAAGCGACGAATACCCCGTTTTGA  444

Query  351  GGAGGTGGAAGAAGAGCCAGAGGTGATCCCTGGGCCTCCATCAGAGAGCCCTGGCATGCTGACTAAGCTCCAGA  424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GGAGGTGGAAGAAGAGCCAGAGGTGATCCCTGGGCCTCCATCAGAGAGCCCTGGCATGCTGACTAAGCTCCAGA  518

Query  425  TCAAACAGATGATGGAGGCAGCAACACGACAAATCGAGGAGAGGAAAAAACAGCTGAGCTTCATTAGCCCCCCT  498
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TCAAACAGATGATGGAGGCAGCAACACGACAAATCGAGGAGAGGAAAAAACAGCTGAGCTTCATTAGCCCCCCT  592

Query  499  ACACCTCAGCCAAAGACTCCTTCTTCCTCCCAACCAGAACGACTTCCTATTGGCAACACTATTCAGCCCTCCCA  572
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ACACCTCAGCCAAAGACTCCTTCTTCCTCCCAACCAGAACGACTTCCTATTGGCAACACTATTCAGCCCTCCCA  666

Query  573  GGCTGCCACTTTCATGAATGATGCCATTGAGAAGGCAAGGAAAGCAGCTGAACTGCAAGCTCGAATCCAAGCCC  646
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGCTGCCACTTTCATGAATGATGCCATTGAGAAGGCAAGGAAAGCAGCTGAACTGCAAGCTCGAATCCAAGCCC  740

Query  647  AGCTGGCACTGAAGCCAGGACTCATCGGCAATGCCAACATGGTGGGCCTGGCTAATCTCCATGCCATGGGCATT  720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGCTGGCACTGAAGCCAGGACTCATCGGCAATGCCAACATGGTGGGCCTGGCTAATCTCCATGCCATGGGCATT  814

Query  721  GCTCCCCCGAAGGTGGAGTTAAAAGACCAAACGAAACCTACACCACTGATCCTGGATGAGCAAGGGCGCACTGT  794
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GCTCCCCCGAAGGTGGAGTTAAAAGACCAAACGAAACCTACACCACTGATCCTGGATGAGCAAGGGCGCACTGT  888

Query  795  AGATGCAACAGGCAAGGAGATTGAGCTGACACACCGCATGCCTACTCTGAAAGCCAATATTCGTGCTGTGAAGA  868
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AGATGCAACAGGCAAGGAGATTGAGCTGACACACCGCATGCCTACTCTGAAAGCCAATATTCGTGCTGTGAAGA  962

Query  869  GGGAACAATTCAAGCAACAACTAAAGGAAAAGCCATCAGAAGACATGGAATCCAATACCTTTTTTGACCCCCGA  942
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGGAACAATTCAAGCAACAACTAAAGGAAAAGCCATCAGAAGACATGGAATCCAATACCTTTTTTGACCCCCGA  1036

Query  943  GTCTCCATTGCCCCTTCCCAGCGCCAGAGACGCACTTTTAAATTCCATGACAAGGGCAAATTTGAGAAGATTGC  1016
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GTCTCCATTGCCCCTTCCCAGCGCCAGAGACGCACTTTTAAATTCCATGACAAGGGCAAATTTGAGAAGATTGC  1110

Query 1017  TCAGCGATTACGGACAAAGGCTCAACTGGAGAAGCTACAGGCAGAGATTTCACAAGCAGCTCGAAAAACAGGCA  1090
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TCAGCGATTACGGACAAAGGCTCAACTGGAGAAGCTACAGGCAGAGATTTCACAAGCAGCTCGAAAAACAGGCA  1184

Query 1091  TCCATACTTCGACTAGGCTTGCCCTCATTGCTCCTAAGAAGGAGCTAAAGGAAGGAGATATTCCTGAAATTGAG  1164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TCCATACTTCGACTAGGCTTGCCCTCATTGCTCCTAAGAAGGAGCTAAAGGAAGGAGATATTCCTGAAATTGAG  1258

Query 1165  TGGTGGGACTCTTACATAATCCCCAATGGCTTTGATCTTACAGAGGAAAATCCCAAGAGAGAAGATTATTTTGG  1238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TGGTGGGACTCTTACATAATCCCCAATGGCTTTGATCTTACAGAGGAAAATCCCAAGAGAGAAGATTATTTTGG  1332

Query 1239  AATCACAAATCTTGTTGAACATCCAGCCCAGCTCAATCCTCCAGTTGACAATGACACACCAGTTACTCTGGGAG  1312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AATCACAAATCTTGTTGAACATCCAGCCCAGCTCAATCCTCCAGTTGACAATGACACACCAGTTACTCTGGGAG  1406

Query 1313  TATATCTTACCAAGAAGGAACAGAAAAAACTTCGGAGACAAACAAGGAGGGAAGCACAGAAGGAACTACAAGAA  1386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TATATCTTACCAAGAAGGAACAGAAAAAACTTCGGAGACAAACAAGGAGGGAAGCACAGAAGGAACTACAAGAA  1480

Query 1387  AAAGTCAGGCTGGGCCTGATGCCTCCTCCAGAACCCAAAGTGAGAATTTCTAATTTGATGCGAGTATTAGGAAC  1460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AAAGTCAGGCTGGGCCTGATGCCTCCTCCAGAACCCAAAGTGAGAATTTCTAATTTGATGCGAGTATTAGGAAC  1554

Query 1461  AGAAGCTGTTCAAGACCCCACGAAGGTAGAAGCCCACGTCAGAGCTCAGATGGCAAAAAGACAGAA--------  1526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct 1555  AGAAGCTGTTCAAGACCCCACGAAGGTAGAAGCCCACGTCAGAGCTCAGATGGCAAAAAGACAGAACCCTGCCT  1628

Query 1527  --------------------------------------------------AGCGCATGAAGAGGCCAACGCTGC  1550
                                                              ||||||||||||||||||||||||
Sbjct 1629  CTGATCTTCAATGCCTTTCTCACTTGTGGATGTCCTTCCTGTCACGACAGAGCGCATGAAGAGGCCAACGCTGC  1702

Query 1551  CCGAAAACTCACAGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAGCTTAAAGAAGACATTTCACAGGGGGTAC  1624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  CCGAAAACTCACAGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAGCTTAAAGAAGACATTTCACAGGGGGTAC  1776

Query 1625  ACATATCTGTATAT------------------------------------------------------------  1638
            ||||||||||||||                                                            
Sbjct 1777  ACATATCTGTATATAGGTAGGTGTCCATACTGGGCCAAACTTCCCCTTAGAATTACTAAAACATTTTCCAAGTG  1850

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 1851  CTTGAGGCAGAATCATTGTGGCCTAAAAGCATACCTAACACCAGTTCCTACTCTCTTTTAATGACCCTAGTGTG  1924

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 1925  GATCAAGAGCTAGTAAATCTTGTAAAATAGCGAGAGTTAATGACTTATGTTTATGGTTACCCAGTTCTTCCCTC  1998

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 1999  TCAAGTCTTCTTTTTTTTTTTACCAGAATATTAGTTCTGAACAAGTCAATATACTTGTTCAGGCCAAGATGTGA  2072

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 2073  ACTAAAGATTGTATGTCCTTTGAGAACTATAAAATATCATCCTATTTCTTTTTTTTTTCATCTTTTTTTTTTTA  2146

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 2147  AATGGTCTGAGTTTGCTTCCAACATCCATGGAAGCATTACAAATTTTCTTTCCTCCGTAGTCATATCCTTACCC  2220

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 2221  TGATGTATTGCTGTGTTTCATCCTCACTCCAAAATGCATTTTATATGTTGTAAATATTTTTCTACCTTTGTGTT  2294

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 2295  GATTTAATGTTTTTATTCTTTTATGTTGAGTACATGTGTATCTTCTATTTTTAAAATGTGCTTATTTCTATTAA  2368

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 2369  CTAGTTCTTTATTATAAAAGTGGTACATTATCACAAAAATAGTGAATGCTTATTAAGATTTAAAAAATTGTCTG  2442

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 2443  ACAACACAGAAGAATACTTACTCAAAATGTCTCCTTTCTATTCTCTGATCCCTTAGAACCACTCTCTTTAGGTA  2516

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 2517  ATTGCTATTAACAGTTTTTCACATATCCTCCTAGAAAATTTTCATGCCTATATAGTGATCCTATATATATATTT  2590

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 2591  TATTTATTTATTTATTTATTTTGAGACGGAGTTTCAGTCTTGTTGCCCAGGCAGGAGTGCAATGGCGCGATCTC  2664

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 2665  AGCGCACTGCAACCTCTGCCTCCCAAGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTAGGATTACAG  2738

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 2739  GCACGCACCCCCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGT  2812

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 2813  CTTAAACTCCTGACCTCGTGATCTGCCCACTTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCA  2886

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 2887  CCCAGCCAAGTAATCCTATATTATAAGAGTCTAAGGGTCTAGAGGACAAAAAGTCTGTAGGTCTTTACATTGTC  2960

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 2961  AAGAACAATGAGATTGTAAGTATTTTTGGATGATAGTAAATACCTCTCCCTGACTCTTAGAGTAAACTTTGGTT  3034

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 3035  AGTAATGTAATGGTTAATGTAAAGTGCTAGACTTTGAAGAAATGTAAGAGTGTGGAAATATTTCTAGACTCATC  3108

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 3109  AACTCTACCTTTTAAGCATTCATCTATTTGTTTACTCCAGAGGCCTTTGTTTATAGAGAGGAAACCATTTTGGA  3182

Query 1639  --------------------------------------------------------------------------  1638
                                                                                      
Sbjct 3183  TTCATCTTTTTACTTGCCACTCCATTCAGGCAGCTGCTGATGCTAAAATGGAAGACATAACTAAACTTTCCCTT  3256

Query 1639  ----AGAGTTCGAAATTTGAGCAACCCAGCCAAGAAGTTCAAGATTGAAGCCAATGCTGGGCAACTGTACCTGA  1708
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257  CTCCAGAGTTCGAAATTTGAGCAACCCAGCCAAGAAGTTCAAGATTGAAGCCAATGCTGGGCAACTGTACCTGA  3330

Query 1709  CAGGGGTGGTGGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGGG------------------------  1758
            ||||||||||||||||||||||||||||||||||||||||||||||||||                        
Sbjct 3331  CAGGGGTGGTGGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGGGGGTGAGTCTGAAAAACTTGAGGGA  3404

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 3405  GACTGTCCCCAGACAACCCTAGGCTTAGAGTGATTAGCATTGTGGGGAGAAAGGAGAAAAAGATCGTATTTTAG  3478

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 3479  TGCCATACCTGATATAATATGCTAGGTCTCTGCTTCTGTGTTTTTTGGAGTAGAAGGCCCTAAGATGTGGTTCC  3552

Query 1759  --------------------------------------------------------------------------  1758
                                                                                      
Sbjct 3553  TGAGATTGCTTCAACTACCACATTAATGTCTGAGCTCAGAGGTTCTTTCTACCCCATCATCTTCCACAGTTCTG  3626

Query 1759  -------------------------GGCCCCAAGGCCCAGAAGAAATTTAAGCGTCTTATGCTGCATCGGATAA  1807
                                     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627  GCAAAATTATTCTTCTCTGTTTCCAGGCCCCAAGGCCCAGAAGAAATTTAAGCGTCTTATGCTGCATCGGATAA  3700

Query 1808  AGTGGGATGAACAGACATCTAACACAAAGGGAGAT----------GATGATGAGGAGTCTGATGAGGAAGCTGT  1871
            |||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||
Sbjct 3701  AGTGGGATGAACAGACATCTAACACAAAGGGAGATGGTGAATGGGGATGATGAGGAGTCTGATGAGGAAGCTGT  3774

Query 1872  GAAGAAAACCAACAAATGTGTACTAGTCTGGGAGGGTACAGCCAAAGACCGGAGCTTTGGAGAGATGAAGTTTA  1945
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775  GAAGAAAACCAACAAATGTGTACTAGTCTGGGAGGGTACAGCCAAAGACCGGAGCTTTGGAGAGATGAAGTTTA  3848

Query 1946  AACAGTGTCCTACAGAGAACATGGCTCGTGAGCATTTCAAAAAGCATGGGGCTGAACACTACTGGGACCTTGCG  2019
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849  AACAGTGTCCTACAGAGAACATGGCTCGTGAGCATTTCAAAAAGCATGGGGCTGAACACTACTGGGACCTTGCG  3922

Query 2020  CTGAGTGAATCTGTGTTAGAGTCCACTGAT--------------------------------------------  2049
            ||||||||||||||||||||||||||||||                                            
Sbjct 3923  CTGAGTGAATCTGTGTTAGAGTCCACTGATTGAGACTACTGCAAGCCCTTGCCTCTCCTCCCTTGCCTTTGTCT  3996

Query 2050  --------------------------------------------------------------------------  2049
                                                                                      
Sbjct 3997  CTTCAGTCCTCTCACTTATTCTATTTCCCAACCCCCTCCCACTTGTTTGTGTGATCTCAGAACTGTGCCAAGCA  4070

Query 2050  --------------------------------------------------------------------------  2049
                                                                                      
Sbjct 4071  GACACTGGGACAAAGGGAGAATATCTTGCTCCCCTCCTGAGTCAGCCTGGTGTTGCCCTTTATTCCCCTTATGT  4144

Query 2050  ------------------------------------------------  2049
                                                            
Sbjct 4145  GCATATGATTAAAGAGTTATTTTTAAACTTGGTGTGATATTTTTCACA  4192

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.