Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02088
- Subject:
- XR_002958010.1
- Aligned Length:
- 4192
- Identities:
- 2049
- Gaps:
- 2143
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCCGGTGTAACGTTCGGGCTCCGTCTCAGGGGCTGAAGTTTGTGAGGTGTAGTATTGAGTCCTGTTTGAGCTAT 74
Query 1 --------------------ATGGCACTGTCAAAGAGGGAGCTGGATGAGCTGAAACCATGGATAGAGAAGACA 54
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TGTTCTCTTTTTCCTGAAAAATGGCACTGTCAAAGAGGGAGCTGGATGAGCTGAAACCATGGATAGAGAAGACA 148
Query 55 GTGAAGAGGGTCCTGGGTTTCTCAGAGCCTACGGTGGTCACAGCAGCATTGAACTGTGTGGGGAAGGGCATGGA 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GTGAAGAGGGTCCTGGGTTTCTCAGAGCCTACGGTGGTCACAGCAGCATTGAACTGTGTGGGGAAGGGCATGGA 222
Query 129 CAAGAAGAAGGCAGCCGATCATCTGAAACCTTTTCTTGATGATTCTACTCTCCGATTTGTGGACAAACTGTTTG 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CAAGAAGAAGGCAGCCGATCATCTGAAACCTTTTCTTGATGATTCTACTCTCCGATTTGTGGACAAACTGTTTG 296
Query 203 AGGCTGTGGAGGAAGGCCGAAGCTCTAGGCATTCCAAGTCTAGCAGTGACAGGAGCAGAAAACGAGAGCTAAAG 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGGCTGTGGAGGAAGGCCGAAGCTCTAGGCATTCCAAGTCTAGCAGTGACAGGAGCAGAAAACGAGAGCTAAAG 370
Query 277 GAGGTGTTTGGTGATGACTCTGAGATCTCTAAAGAATCATCAGGAGTAAAGAAGCGACGAATACCCCGTTTTGA 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAGGTGTTTGGTGATGACTCTGAGATCTCTAAAGAATCATCAGGAGTAAAGAAGCGACGAATACCCCGTTTTGA 444
Query 351 GGAGGTGGAAGAAGAGCCAGAGGTGATCCCTGGGCCTCCATCAGAGAGCCCTGGCATGCTGACTAAGCTCCAGA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGAGGTGGAAGAAGAGCCAGAGGTGATCCCTGGGCCTCCATCAGAGAGCCCTGGCATGCTGACTAAGCTCCAGA 518
Query 425 TCAAACAGATGATGGAGGCAGCAACACGACAAATCGAGGAGAGGAAAAAACAGCTGAGCTTCATTAGCCCCCCT 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCAAACAGATGATGGAGGCAGCAACACGACAAATCGAGGAGAGGAAAAAACAGCTGAGCTTCATTAGCCCCCCT 592
Query 499 ACACCTCAGCCAAAGACTCCTTCTTCCTCCCAACCAGAACGACTTCCTATTGGCAACACTATTCAGCCCTCCCA 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ACACCTCAGCCAAAGACTCCTTCTTCCTCCCAACCAGAACGACTTCCTATTGGCAACACTATTCAGCCCTCCCA 666
Query 573 GGCTGCCACTTTCATGAATGATGCCATTGAGAAGGCAAGGAAAGCAGCTGAACTGCAAGCTCGAATCCAAGCCC 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GGCTGCCACTTTCATGAATGATGCCATTGAGAAGGCAAGGAAAGCAGCTGAACTGCAAGCTCGAATCCAAGCCC 740
Query 647 AGCTGGCACTGAAGCCAGGACTCATCGGCAATGCCAACATGGTGGGCCTGGCTAATCTCCATGCCATGGGCATT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGCTGGCACTGAAGCCAGGACTCATCGGCAATGCCAACATGGTGGGCCTGGCTAATCTCCATGCCATGGGCATT 814
Query 721 GCTCCCCCGAAGGTGGAGTTAAAAGACCAAACGAAACCTACACCACTGATCCTGGATGAGCAAGGGCGCACTGT 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GCTCCCCCGAAGGTGGAGTTAAAAGACCAAACGAAACCTACACCACTGATCCTGGATGAGCAAGGGCGCACTGT 888
Query 795 AGATGCAACAGGCAAGGAGATTGAGCTGACACACCGCATGCCTACTCTGAAAGCCAATATTCGTGCTGTGAAGA 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGATGCAACAGGCAAGGAGATTGAGCTGACACACCGCATGCCTACTCTGAAAGCCAATATTCGTGCTGTGAAGA 962
Query 869 GGGAACAATTCAAGCAACAACTAAAGGAAAAGCCATCAGAAGACATGGAATCCAATACCTTTTTTGACCCCCGA 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GGGAACAATTCAAGCAACAACTAAAGGAAAAGCCATCAGAAGACATGGAATCCAATACCTTTTTTGACCCCCGA 1036
Query 943 GTCTCCATTGCCCCTTCCCAGCGCCAGAGACGCACTTTTAAATTCCATGACAAGGGCAAATTTGAGAAGATTGC 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GTCTCCATTGCCCCTTCCCAGCGCCAGAGACGCACTTTTAAATTCCATGACAAGGGCAAATTTGAGAAGATTGC 1110
Query 1017 TCAGCGATTACGGACAAAGGCTCAACTGGAGAAGCTACAGGCAGAGATTTCACAAGCAGCTCGAAAAACAGGCA 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TCAGCGATTACGGACAAAGGCTCAACTGGAGAAGCTACAGGCAGAGATTTCACAAGCAGCTCGAAAAACAGGCA 1184
Query 1091 TCCATACTTCGACTAGGCTTGCCCTCATTGCTCCTAAGAAGGAGCTAAAGGAAGGAGATATTCCTGAAATTGAG 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TCCATACTTCGACTAGGCTTGCCCTCATTGCTCCTAAGAAGGAGCTAAAGGAAGGAGATATTCCTGAAATTGAG 1258
Query 1165 TGGTGGGACTCTTACATAATCCCCAATGGCTTTGATCTTACAGAGGAAAATCCCAAGAGAGAAGATTATTTTGG 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGGTGGGACTCTTACATAATCCCCAATGGCTTTGATCTTACAGAGGAAAATCCCAAGAGAGAAGATTATTTTGG 1332
Query 1239 AATCACAAATCTTGTTGAACATCCAGCCCAGCTCAATCCTCCAGTTGACAATGACACACCAGTTACTCTGGGAG 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AATCACAAATCTTGTTGAACATCCAGCCCAGCTCAATCCTCCAGTTGACAATGACACACCAGTTACTCTGGGAG 1406
Query 1313 TATATCTTACCAAGAAGGAACAGAAAAAACTTCGGAGACAAACAAGGAGGGAAGCACAGAAGGAACTACAAGAA 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TATATCTTACCAAGAAGGAACAGAAAAAACTTCGGAGACAAACAAGGAGGGAAGCACAGAAGGAACTACAAGAA 1480
Query 1387 AAAGTCAGGCTGGGCCTGATGCCTCCTCCAGAACCCAAAGTGAGAATTTCTAATTTGATGCGAGTATTAGGAAC 1460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AAAGTCAGGCTGGGCCTGATGCCTCCTCCAGAACCCAAAGTGAGAATTTCTAATTTGATGCGAGTATTAGGAAC 1554
Query 1461 AGAAGCTGTTCAAGACCCCACGAAGGTAGAAGCCCACGTCAGAGCTCAGATGGCAAAAAGACAGAA-------- 1526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AGAAGCTGTTCAAGACCCCACGAAGGTAGAAGCCCACGTCAGAGCTCAGATGGCAAAAAGACAGAACCCTGCCT 1628
Query 1527 --------------------------------------------------AGCGCATGAAGAGGCCAACGCTGC 1550
||||||||||||||||||||||||
Sbjct 1629 CTGATCTTCAATGCCTTTCTCACTTGTGGATGTCCTTCCTGTCACGACAGAGCGCATGAAGAGGCCAACGCTGC 1702
Query 1551 CCGAAAACTCACAGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAGCTTAAAGAAGACATTTCACAGGGGGTAC 1624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CCGAAAACTCACAGCAGAACAGAGAAAGGTCAAGAAAATTAAAAAGCTTAAAGAAGACATTTCACAGGGGGTAC 1776
Query 1625 ACATATCTGTATAT------------------------------------------------------------ 1638
||||||||||||||
Sbjct 1777 ACATATCTGTATATAGGTAGGTGTCCATACTGGGCCAAACTTCCCCTTAGAATTACTAAAACATTTTCCAAGTG 1850
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 1851 CTTGAGGCAGAATCATTGTGGCCTAAAAGCATACCTAACACCAGTTCCTACTCTCTTTTAATGACCCTAGTGTG 1924
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 1925 GATCAAGAGCTAGTAAATCTTGTAAAATAGCGAGAGTTAATGACTTATGTTTATGGTTACCCAGTTCTTCCCTC 1998
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 1999 TCAAGTCTTCTTTTTTTTTTTACCAGAATATTAGTTCTGAACAAGTCAATATACTTGTTCAGGCCAAGATGTGA 2072
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 2073 ACTAAAGATTGTATGTCCTTTGAGAACTATAAAATATCATCCTATTTCTTTTTTTTTTCATCTTTTTTTTTTTA 2146
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 2147 AATGGTCTGAGTTTGCTTCCAACATCCATGGAAGCATTACAAATTTTCTTTCCTCCGTAGTCATATCCTTACCC 2220
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 2221 TGATGTATTGCTGTGTTTCATCCTCACTCCAAAATGCATTTTATATGTTGTAAATATTTTTCTACCTTTGTGTT 2294
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 2295 GATTTAATGTTTTTATTCTTTTATGTTGAGTACATGTGTATCTTCTATTTTTAAAATGTGCTTATTTCTATTAA 2368
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 2369 CTAGTTCTTTATTATAAAAGTGGTACATTATCACAAAAATAGTGAATGCTTATTAAGATTTAAAAAATTGTCTG 2442
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 2443 ACAACACAGAAGAATACTTACTCAAAATGTCTCCTTTCTATTCTCTGATCCCTTAGAACCACTCTCTTTAGGTA 2516
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 2517 ATTGCTATTAACAGTTTTTCACATATCCTCCTAGAAAATTTTCATGCCTATATAGTGATCCTATATATATATTT 2590
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 2591 TATTTATTTATTTATTTATTTTGAGACGGAGTTTCAGTCTTGTTGCCCAGGCAGGAGTGCAATGGCGCGATCTC 2664
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 2665 AGCGCACTGCAACCTCTGCCTCCCAAGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTAGGATTACAG 2738
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 2739 GCACGCACCCCCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGT 2812
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 2813 CTTAAACTCCTGACCTCGTGATCTGCCCACTTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCA 2886
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 2887 CCCAGCCAAGTAATCCTATATTATAAGAGTCTAAGGGTCTAGAGGACAAAAAGTCTGTAGGTCTTTACATTGTC 2960
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 2961 AAGAACAATGAGATTGTAAGTATTTTTGGATGATAGTAAATACCTCTCCCTGACTCTTAGAGTAAACTTTGGTT 3034
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 3035 AGTAATGTAATGGTTAATGTAAAGTGCTAGACTTTGAAGAAATGTAAGAGTGTGGAAATATTTCTAGACTCATC 3108
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 3109 AACTCTACCTTTTAAGCATTCATCTATTTGTTTACTCCAGAGGCCTTTGTTTATAGAGAGGAAACCATTTTGGA 3182
Query 1639 -------------------------------------------------------------------------- 1638
Sbjct 3183 TTCATCTTTTTACTTGCCACTCCATTCAGGCAGCTGCTGATGCTAAAATGGAAGACATAACTAAACTTTCCCTT 3256
Query 1639 ----AGAGTTCGAAATTTGAGCAACCCAGCCAAGAAGTTCAAGATTGAAGCCAATGCTGGGCAACTGTACCTGA 1708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 CTCCAGAGTTCGAAATTTGAGCAACCCAGCCAAGAAGTTCAAGATTGAAGCCAATGCTGGGCAACTGTACCTGA 3330
Query 1709 CAGGGGTGGTGGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGGG------------------------ 1758
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 CAGGGGTGGTGGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGGGGGTGAGTCTGAAAAACTTGAGGGA 3404
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3405 GACTGTCCCCAGACAACCCTAGGCTTAGAGTGATTAGCATTGTGGGGAGAAAGGAGAAAAAGATCGTATTTTAG 3478
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3479 TGCCATACCTGATATAATATGCTAGGTCTCTGCTTCTGTGTTTTTTGGAGTAGAAGGCCCTAAGATGTGGTTCC 3552
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3553 TGAGATTGCTTCAACTACCACATTAATGTCTGAGCTCAGAGGTTCTTTCTACCCCATCATCTTCCACAGTTCTG 3626
Query 1759 -------------------------GGCCCCAAGGCCCAGAAGAAATTTAAGCGTCTTATGCTGCATCGGATAA 1807
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3627 GCAAAATTATTCTTCTCTGTTTCCAGGCCCCAAGGCCCAGAAGAAATTTAAGCGTCTTATGCTGCATCGGATAA 3700
Query 1808 AGTGGGATGAACAGACATCTAACACAAAGGGAGAT----------GATGATGAGGAGTCTGATGAGGAAGCTGT 1871
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 3701 AGTGGGATGAACAGACATCTAACACAAAGGGAGATGGTGAATGGGGATGATGAGGAGTCTGATGAGGAAGCTGT 3774
Query 1872 GAAGAAAACCAACAAATGTGTACTAGTCTGGGAGGGTACAGCCAAAGACCGGAGCTTTGGAGAGATGAAGTTTA 1945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 GAAGAAAACCAACAAATGTGTACTAGTCTGGGAGGGTACAGCCAAAGACCGGAGCTTTGGAGAGATGAAGTTTA 3848
Query 1946 AACAGTGTCCTACAGAGAACATGGCTCGTGAGCATTTCAAAAAGCATGGGGCTGAACACTACTGGGACCTTGCG 2019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 AACAGTGTCCTACAGAGAACATGGCTCGTGAGCATTTCAAAAAGCATGGGGCTGAACACTACTGGGACCTTGCG 3922
Query 2020 CTGAGTGAATCTGTGTTAGAGTCCACTGAT-------------------------------------------- 2049
||||||||||||||||||||||||||||||
Sbjct 3923 CTGAGTGAATCTGTGTTAGAGTCCACTGATTGAGACTACTGCAAGCCCTTGCCTCTCCTCCCTTGCCTTTGTCT 3996
Query 2050 -------------------------------------------------------------------------- 2049
Sbjct 3997 CTTCAGTCCTCTCACTTATTCTATTTCCCAACCCCCTCCCACTTGTTTGTGTGATCTCAGAACTGTGCCAAGCA 4070
Query 2050 -------------------------------------------------------------------------- 2049
Sbjct 4071 GACACTGGGACAAAGGGAGAATATCTTGCTCCCCTCCTGAGTCAGCCTGGTGTTGCCCTTTATTCCCCTTATGT 4144
Query 2050 ------------------------------------------------ 2049
Sbjct 4145 GCATATGATTAAAGAGTTATTTTTAAACTTGGTGTGATATTTTTCACA 4192
