Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02292
- Subject:
- XR_002958776.1
- Aligned Length:
- 5294
- Identities:
- 414
- Gaps:
- 4880
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGGAGCGGGAGGGAGGGAGCACGGGCGGAGAGAGCGCCAGAGCCGGGCCGAGCCGCGCTGGAGTTACAAACTC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TATTGTGACGCACTTACTACGACTGACGGCCGCTGCCAGACCTTCCCCAGACTTGCTGCCCTCAGCATTTTCGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAAACAATGGGGCCGGAGCAGGGAACGCGGCCAGCCGCCTGCAATCGCTGCATCTGCGCCCGCTCCTGTGCTCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGCGTCCTACCTAACCCCGGGAAGTCAGAGCCGCTGGGAGTTTCTGACTTACTCGAAGAAGTCTGTCCTGGGCA 296
Query 1 ---------------------------------------------------------------ATGGCAAAGCA 11
|||||||||||
Sbjct 297 AAGAGCACACACGAATAGACTTCAGATTAGCTGCTTCTCTGGAAACGCATAAAAAAAGACCAAATGGCAAAGCA 370
Query 12 ACCTTCTGATGTAAGTTCTGAGTGTGACCGAGAAGGTAGACAATTGCAGCCTGCGGAGAGGCCTCCCCAGCTCA 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACCTTCTGATGTAAGTTCTGAGTGTGACCGAGAAGGTAGACAATTGCAGCCTGCGGAGAGGCCTCCCCAGCTCA 444
Query 86 GACCTGGGGCCCCTACCTCCCTACAGACAGAGCCACAAGGTAATCCTGAAGGCAATCACGGAGGTGAAGGGGAC 159
|||||||||||||||||||||||||||||||||||||
Sbjct 445 GACCTGGGGCCCCTACCTCCCTACAGACAGAGCCACA------------------------------------- 481
Query 160 AGCTGCCCCCACGGCAGCCCTCAGGGCCCGCTGGCCCCACCTGCCAGCCCTGGCCCTTTTGCTACCAGATCCCC 233
Sbjct 482 -------------------------------------------------------------------------- 481
Query 234 GCTTTTCATCTTTATGAGAAGATCCTCCCTGCTGTCTCGATCCTCCAGTGGGTATTTCTCTTTTGACACAGACA 307
|||||
Sbjct 482 ---------------------------------------------------------------------AGACA 486
Query 308 GGAGCCCAGCACCCATGAGTTGTGACAAATCAACACAAACCCCAAGTCCTCCTTGCCAGGCCTTCAACCACTAT 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 GGAGCCCAGCACCCATGAGTTGTGACAAATCAACACAAACCCCAAGTCCTCCTTGCCAGGCCTTCAACCACTAT 560
Query 382 CTCAGTGCAATGGCTTCCATGAGGCAGGCTGAACCTGCAGATATGCGCCCAGAGATATGGATCGCCCAAGAGTT 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 CTCAGTGCAATGGCTTCCATGAGGCAGGCTGAACCTGCAGATATGCGCCCAGAGATATGGATCGCCCAAGAGTT 634
Query 456 GCGGCGTATTGGAGACGAGTTTAACGCTTACTATGCAAGGAG-------------------------------- 497
||||||||||||||||||||||||||||||||||||||||||
Sbjct 635 GCGGCGTATTGGAGACGAGTTTAACGCTTACTATGCAAGGAGGTTAGAGAAATAGAGGAAGTTGTCGTGTAGTT 708
Query 498 -------------------------------------------------------------------------- 497
Sbjct 709 GTCATGTATTCAGTCCACTTAAGGGCAGTGGGGAAGCGTTTGAGACGGAGCTGTGGAGGCTGAATCCTTGAAGG 782
Query 498 -------------------GGTATTTTTGAATAATTACCAAGCAGCCGAAGACCACCCACGAATGGTTATCTTA 552
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 AGGAGGTGAGAGAGGCACAGGTATTTTTGAATAATTACCAAGCAGCCGAAGACCACCCACGAATGGTTATCTTA 856
Query 553 CGACTGTTACGTTACATTGTCCGCCTGGTGTGGAGAATGCAT-------------------------------- 594
||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 CGACTGTTACGTTACATTGTCCGCCTGGTGTGGAGAATGCATTGACAGGTTCTTTGCGGAGCCGAGATACCATG 930
Query 595 -------------------------------------------------------------------------- 594
Sbjct 931 CAGACATTTTGCTTGTTCAAACCAACAAGACCCAGCACCGCGGTCTCCTGGTGCCATTATTATGCAGCCAGCGG 1004
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1005 TTCTCTTGTGGAGGGGGCAGGTGACGTTTCAGAAGACACCGAGCTGGATGGGACTACCTTTCTGTTCATCACCA 1078
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1079 CACAGCAGAATTTCTAATGGAAGTTTGTTGTGAATGTAAAGGAGGGAGCATTCTTTGCTTTTTAATATACAAAC 1152
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1153 CATGGTTTTTTGGAGCAGGATTTTGTGTAAGAATGGTGTTTACATGCAGTGTGTTTTCCCCCTCACCTTCAATA 1226
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1227 AGGTTTTTCAAAAAGGAAATGGAAACTTTTTAACCAATTTGTGAATAACTTTTGTATTAAAATTTTAAGAACCT 1300
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1301 ACGGCCTATTCTCAGAGGATTATGTAACCCCTGCAGTGGAAACTGAGCCAGCTAACTTAAAAAGCTGCCTTAGT 1374
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1375 TTATTTTTAGAGATTACAGAATTTTTAAACAGGGAGACGTGTGATATACTCCCTCCCTTCCCTACTATTGCCTC 1448
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1449 TCTGACCTTTTTAAATTATTTTTAATACCAAAAGAGTTCTTTTGAAATGGAACTGATTAAAAGGGCAGAGGGTC 1522
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1523 TGTTGCCAGCCTGCATTGATATACCAGTCCCATTTGTAAATATTTACGTACCTTTATAAATTCAGTTGCATCTG 1596
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1597 TGGCAAAATTTCAGACTATTTTTGCGTCTTTCCTCATCACTTTTTGTGATGCAACTCCAGTCTGGACTCAGATG 1670
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1671 CATAGATTTGGTCCAGTGTATTTTCATGATAAAGTGAAATTGAGTCAGAACAAGAGTTAATATCTGCCTGTATC 1744
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1745 TTGCACAGTTCGAGCGATCTGTTATTAACTGGGAAGCATTTGGTGTTGGTTTTCATTCCATTTCGACGAGCATG 1818
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1819 TTATTGGGAAGTATTCTGAAGAGGCAATAGCAGTAATAACAACAGACTTAAGTGCTACGCCCCTTTGTGCTGCT 1892
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1893 GGCTTTTCTGGTTGCAGGCTTTCCCATGGTCACAGGATGCACTGTCAGCATCAGGTCCCAGAGGGCCACCGTGT 1966
Query 595 -------------------------------------------------------------------------- 594
Sbjct 1967 CCATTACAGCAGAGTCCAGCTGCAGCATCCAGCTCACGCCCTCATGGGAATTGGCACAGGCCTGGGGCAGGGCT 2040
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2041 TCTGATGGCCATTTGCTTGGCCTCCTGCATTTTAGTCCAACTCACAGTCCACTAGCTTCACTCCTTTAAATTCA 2114
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2115 CTTTGAAACAGGCCTCATCCCACTTCCACCAGCACCATAGAAGAATAATTCTGGGCAGAAGTCTGTTTTTTTTC 2188
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2189 ATTTTTCCAGGACAGTTGGATATTGTCAGGCCACTTGTGACCCCAGCCATGTAGTGAGGGTGCTCTTTCTCTGT 2262
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2263 GCCTGCTCCTTATGAGTGCAGTGGAAGGAAGCCACACACTGGTCAGTCATTTCAGAGGCAGCAGATGCCCAGGG 2336
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2337 AGACCCAAGAAAGAGTCAGGTTAGGGAGCAGTGAAAGTGAGGAGGGAAGACAATTCTGTGAACTCTGTAACTCT 2410
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2411 TAAAATTTTTGAAAACTCCATCGTTAAACAACTTTTAAAAGAAATAACTAAATTTTCAAATGAGTAAGCAGTGC 2484
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2485 CACCAACTAGTGTTTTGCCCGATAGAAGAGCCAGCATGTTCACGTTATTTAAATTAGGTGGAAAAATCTAAACA 2558
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2559 TTTTTATCTTCATAATTTAAAAAATATATATGTATATATTGCATATTCACTTTTTCCTTTAGGTAGAGATGATT 2632
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2633 TCAATCCAAATACTCTTACTTTAAAAAATTTCCTTTCCCCAAGAATCTCCTTGGGACTTTGACTTATTTTTAAA 2706
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2707 GCTGTGTTGGAGCTCATCTTGTTCCCTGATGTGTCTCGAGCCCATTGGTAGGGTCATACAAAGCCCACGGTTAC 2780
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2781 AAGCAGTGGTAGGATTGCAGCCGTGGGCCTGCTGGACACACACATACACCAAAGATGTATTTGGATCTGGGCAC 2854
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2855 CCCCTCCCAGGATCCCTGTACTCACGTGCCAGTCTCCTGACTAGAGCACTTTACTCTGTTTCCTCAGCCCTGCA 2928
Query 595 -------------------------------------------------------------------------- 594
Sbjct 2929 GCCCCTGGGAGCACACACTGGGTGCAGCCCTGGGCCAGGCACGGGAGGCCCTGCCCTGTGCTGCCCAGGGGCTG 3002
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3003 TGTGCACCACATGAGCACATTTCCCTCTGGCCTGGCGGCCTCCAGGCTGGCTGTGGAAACAGTTCCTGAGGAAA 3076
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3077 TTAGAGATTCTATGAATTGTAGGAGTATTAAAGACCAGGCTGTTGGCACCAGAACTTAAAGCGATGACTGGATG 3150
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3151 TCTCTGTACTGTATGTATCTGGTTATCAAGATGCCTCTGTGCAGAAAGTATGCCTCCCGTGGGTATACGTTTTT 3224
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3225 ACCTTTTTTAAAAAACATTTTTGTAGAAAAAATAATTAAATCCCCTTTTTGGAAACTTACTGCAGGTTTTGTGC 3298
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3299 CTTGACAACCTCTCCCTATGTGAGGTTTGTAAAAAGTGTCCTGTGACTTAACACAGAAACGCAATAAACACACA 3372
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3373 CAAAATAGTTTCATGAGTGATTCTTCAGATGCCCTTCCCAACTGGTTAGTTGATCAAGAATTTTGGGGGTGGGG 3446
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3447 GTTGCGGAGAAATCAAGTTTAAAATTCCTTCTGATTAAAAAAATATAGTGGAATACAATTGTCTGCCGTTTCCC 3520
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3521 CTTCTTAATGTATATATTGTGAGTATTTATTAGATTCGTAGGTCATATTACTTATCAACTGAGCCAAATGTCTG 3594
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3595 TGTGCAATTGTGTTTCCTTTACCTTGTAAAATTTTGTACAGCATAAATAAGTAAAAAAATCACTGTTTTTCTCA 3668
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3669 ACTTTTTCAAAATCAAGGATTGTAAATATTGTAGATTCTTTTTCTGTGTGATGTGTCCTACTGTTTCATAATGC 3742
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3743 TGTAACTTGTAGAAATATTGTATATTTATTTTCTGCTTATTTAATGTCTTAATTTCTGAAAAGTATTAACATCC 3816
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3817 CTGTCTCCCACTCCCCTGCCGTCCCATGAAGTTAACTCCTGAGAGTTGTCGGGGGTGACTGGAGAGCTCATTGC 3890
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3891 AGACCACGTGGTCCTCCAGGGTGGCTCTCCACCTTCGGGTCCTGGTATTTCCAGTCAAGTGGGTTTCAATTCTT 3964
Query 595 -------------------------------------------------------------------------- 594
Sbjct 3965 GGGCTTTGCCGCCCTTATGATGAAGTGTGTGTTTGATGCCAGTGAGAAACTCAGTCTGGCAGGCTACAAAATTC 4038
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4039 TACTCCAAGAAATACCCAGCAACCTTCTGTTTGTTCCAAAGCAACTAGCTTATCATGCAAGCAAATTTTGCTGA 4112
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4113 CTCCAGGCTTTATCTTTAGGAAAACAAAAAAACCAAAGTATTATCAGCAGGTGGGAAAGATTTTTCTATTGAAA 4186
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4187 ATTTATCCCTGACAACTCAGCGTTTAGAAAAGAAATAAAATGTGCCACTTCCAGAGGTGCTGCATTGCAGTTGT 4260
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4261 TCAGGGCTAGGGCCAGGCAGGACAAGTGAATGGGTGGGACAGGTGGCTCCTGCCTAAGGACCACCTCAGGCCAC 4334
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4335 TAACCCCTTGTGGACAACTGTGAGTAGCTGGGTTTTCCCCCACCTGCTGTGCAACTTCCTGTGCTTTGAGGTTG 4408
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4409 GACTAACTTGTCTTCAGGAGCTAATTAACTGTACAGCCCTCCCCACGCCCCACCCATACGGTCACTGCATTTGG 4482
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4483 TCAGCCTGCTTCTTCAGGTCGATGCCCTCCTTCTGATACTCCATCTCCTTCAGGGGAGGTTGGGGCCCCACTGG 4556
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4557 ACTGGGTGTCAAGATGTGAAAGCTTATGGGAGCTTTAAGGAGACTTCATGGTGGTTCCATGCAGGTGGTTCTGC 4630
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4631 CATCCCTGCTGATTTAGCCTGGTGCCTGTGTGTGTCCACTCACGTACACGTGGGGTGGGGGAAACGTGTCTACA 4704
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4705 GATGACGCTAAATCAGTTGGGGTCTACTCTAAACAGCATTGTGTGTAAGAAGCATCCTCAAGCTCCCAGTTAAG 4778
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4779 TAACTTGACTACTTTTATTTGGGAATTTCAGACTATAGAAGCTCTCTTATGTTTTATGTCCAGATTCTGTGACC 4852
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4853 ACTAGTTACTGTATCAGAACTCATCAGGTACCCACTTATAAATAGCACTGATCTGGCTGTATACTGATCCATCA 4926
Query 595 -------------------------------------------------------------------------- 594
Sbjct 4927 CTAACCTGTTTTCTAGGACCCAGCGTATGTAGCATTTGTATTGCAGTTTCCCTGGCTTACTTGTGTTTTGCACT 5000
Query 595 -------------------------------------------------------------------------- 594
Sbjct 5001 GATGAATTTTGACAGGGTAATTGCCACTTTACTTGTGCAATACTGCTGTAAATAACTGCAGATTTTTAAACAAT 5074
Query 595 ---------------------------------------- 594
Sbjct 5075 CTTTTATGTTAATTTTATAAAAATAAAACTTTCAACTAGT 5114
