Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02426
- Subject:
- NR_146085.2
- Aligned Length:
- 4823
- Identities:
- 1350
- Gaps:
- 3424
Alignment
Query 1 ATGTCAGTGGACATGAATAGCCAGGGGTCTGACAGCAATGAAGAGGACTATGACCCAAATTGTGAGGAAGAGGA 74
|| |||..||..||.|||| .||.|| |||||
Sbjct 1 -------------------------GG------AGCTGTGGGGACGACT---------CTTCTG-----GAGGA 29
Query 75 AGAAGAAGAAGAAGACGACCCTGGG---GACATAGAGGACTATTACGTGGG--AGTAGCCAGCGATG------- 136
||.|| |..||| ||| .|| |||.|| .|..|||..||.||
Sbjct 30 AGCAG--------------CGCGGGCTTGAC----CGG-------CGTCGGCCCGCCGCCTCCGCTGCCGCTTC 78
Query 137 ------------------TGGAGCAGCAGG------------------GGGCT----------GATGCCTTTGA 164
|||..|.||..| ||||| ||.|||...|.
Sbjct 79 GCCCCAATCCGGTCCCTCTGGCCCGGCCTGACCCGGTCTGGCTTGTTCGGGCTCAGCGGCCGCGAGGCCGCAGC 152
Query 165 TCCCGA-GGA-----------GTACCAGTTCACTTGCTTGAC---------------CTACAAGGAATCTGAGG 211
|||||| ||| || ||...|||||..|||| ||.||| ||||...||
Sbjct 153 TCCCGATGGAAATCATATTATGT---AGAATACTTGGGTGACATCTGCCTGAGAGATCTCCAA-GAATTACAG- 221
Query 212 GTGCCCTCAATGAGCACATG--ACCAGCTTAGCTTCTGTCCT-----AAAGGTATCTCATTCAGTTGCTAAACT 278
|||.|..|||..||| || |.||||| ||.||...||| |..||||||||||||||||||||||||
Sbjct 222 --GCCGTTGATGCTCAC-TGCCATCAGCT--GCATCCTCCCTATGGCACTGGTATCTCATTCAGTTGCTAAACT 290
Query 279 TATATTAGTTAATTTCCACTGGCAAGTTTCAGAGATATTGGACAGATACAAGTCCAATTCTGCTCAACTGCTTG 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 TATATTAGTTAATTTCCACTGGCAAGTTTCAGAGATATTGGACAGATACAAGTCCAATTCTGCTCAACTGCTTG 364
Query 353 TTGAGGCTCGAGTTCAGCCTAATCCATCAAAACATGTTCCCACATCCCATCCCCCTCACCACTGTGCAGTGTGT 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TTGAGGCTCGAGTTCAGCCTAATCCATCAAAACATGTTCCCACATCCCATCCCCCTCACCACTGTGCAGTGTGT 438
Query 427 ATGCAGTTTGTGCGAAAGGAAAACCTACTCTCTCTGGCCTGTCAGCACCAGTTTTGCCGCAGCTGCTGGGAGCA 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 ATGCAGTTTGTGCGAAAGGAAAACCTACTCTCTCTGGCCTGTCAGCACCAGTTTTGCCGCAGCTGCTGGGAGCA 512
Query 501 GCACTGCTCAGTTCTCGTCAAGGACGGCGTGGGCGTGGGAGTCTCTTGCATGGCTCAGGACTGTCCACTCCGTA 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 GCACTGCTCAGTTCTCGTCAAGGACGGCGTGGGCGTGGGAGTCTCTTGCATGGCTCAGGACTGTCCACTCCGTA 586
Query 575 CACCAGAGGACTTTGTGTTTCCATTGCTTCCCAATGAAGAATTGAGAGAGAAATACAGGCGCTACCTCTTCAGG 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 CACCAGAGGACTTTGTGTTTCCATTGCTTCCCAATGAAGAATTGAGAGAGAAATACAGGCGCTACCTCTTCAGG 660
Query 649 GACTATGTGGAGAGTCATTACCAGCTCCAGCTGTGCCCTGGTGCAGACTGCCCCATGGTTATTCGGGTACAGGA 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GACTATGTGGAGAGTCATTACCAGCTCCAGCTGTGCCCTGGTGCAGACTGCCCCATGGTTATTCGGGTACAGGA 734
Query 723 GCCTAGAGCTCGCCGAGTACAGTGCAATCGGTGCAACGAGGTCTTCT--------------------------- 769
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 GCCTAGAGCTCGCCGAGTACAGTGCAATCGGTGCAACGAGGTCTTCTGGTAAGAGTGAGTGTGAGTGCTGAGCA 808
Query 770 -------------------------------------------------------------------------- 769
Sbjct 809 GCCCTGGGCTCATGCCCCATCCTCCAAAGCACCACTGCTGTTGCTCCATGTGAGGGCGGCACTGGAAGAGGCAG 882
Query 770 ------------------------------------GTTTCAAGTGTCGTCAGATGTATCACGCACCCACAGAC 807
||||||||||||||||||||||||||||||||||||||
Sbjct 883 GGTCTCTGAGCCAACAGAACAGCTGTGCTCCAAGTGGTTTCAAGTGTCGTCAGATGTATCACGCACCCACAGAC 956
Query 808 TGTGCCACAATCCGGAAATGGCTCACGAAGTGTGCAGACGACTCTGAAACAGCCAACTACATTAGTGCTCACAC 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGTGCCACAATCCGGAAATGGCTCACGAAGTGTGCAGACGACTCTGAAACAGCCAACTACATTAGTGCTCACAC 1030
Query 882 TAAAGACTGTCCCAAGTGCAACATCTGCATTGAGAAGAATGGAGGCTGCAATCACATGCAATGCTCCAAATGTA 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 TAAAGACTGTCCCAAGTGCAACATCTGCATTGAGAAGAATGGAGGCTGCAATCACATGCAATGCTCCAAATGTA 1104
Query 956 AACACGACTTCTGCTGGATGTGTCTAGGAGATTGGAAGACTCATGGCAGTGAATACTATGAGTGCAGTCGTTAC 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 AACACGACTTCTGCTGGATGTGTCTAGGAGATTGGAAGACTCATGGCAGTGAATACTATGAGTGCAGTCGTTAC 1178
Query 1030 AAGGAGAATCCTGACATCGTGAACCAGAGCCAACAAGCCCAGGCGAGGGAAGCCCTCAAGAAGTACTTATTCTA 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 AAGGAGAATCCTGACATCGTGAACCAGAGCCAACAAGCCCAGGCGAGGGAAGCCCTCAAGAAGTACTTATTCTA 1252
Query 1104 CTTTGAGAGGTGGGAAAACCACAATAAAAGCTTGCAGCTAGAGGCACAGACATACCAGCGGATTCACGAGAAGA 1177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 CTTTGAGAGGTGGGAAAACCACAATAAAAGCTTGCAGCTAGAGGCACAGACATACCAGCGGATTCACGAGAAGA 1326
Query 1178 TTCAGGAGAGGGTCATGAACAATCTGGGGACATGGATCGACTGGCAGTACCTACAGAATGCTGCCAAGCTCTTG 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327 TTCAGGAGAGGGTCATGAACAATCTGGGGACATGGATCGACTGGCAGTACCTACAGAATGCTGCCAAGCTCTTG 1400
Query 1252 GCCAAGTGTCGATACACCCTGCAATACACCTACCCATATGCATATTACATGGAGTCCGGACCCAGGAAGAAGCT 1325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 GCCAAGTGTCGATACACCCTGCAATACACCTACCCATATGCATATTACATGGAGTCCGGACCCAGGAAGAAGCT 1474
Query 1326 GTTTGAATACCAGCAGGCTCAGCTGGAGGCTGAGATCGAAAACCTCTCATGGAAAGTGGAGCGTGCAGACAGCT 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 GTTTGAATACCAGCAGGCTCAGCTGGAGGCTGAGATCGAAAACCTCTCATGGAAAGTGGAGCGTGCAGACAGCT 1548
Query 1400 ATGACAGAGGGGACTTGGAGAACCAGATGCATATAGCGGAGCAGCGGAGGAGAACCCTGCTGAAAGATTTCCAT 1473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 ATGACAGAGGGGACTTGGAGAACCAGATGCATATAGCGGAGCAGCGGAGGAGAACCCTGCTGAAAGATTTCCAT 1622
Query 1474 GACACC-------------------------------------------------------------------- 1479
||||||
Sbjct 1623 GACACCTAAGTTGGGATGTGGATGTGCCGGGGTGAGGAAGATGTGGCTGCAAGGTCTCCCGGCTGCCATACTGC 1696
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1697 ATGCTGCAGGCTCTGCCTTTCATGACCCCAGGCAACAGCCAGGGCCCCACTCCTGAGAGACACTGGCAACACCT 1770
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1771 CTTAGTTGATTTCTGTTTTCTTCTCTTTTCACTTTTTGTTTCTACCAGGGTAGAGGCCATGTTGAACTGGCCTC 1844
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1845 TTTTCAGGACTTTTATTTCCCCCTGGATGGTTGTTGGGAGGGAGGGAAAGTGTTTTCTGAATGGCTATTAATAG 1918
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1919 TATTAGATCATTACAACTTATGTAACTTTCAAAGGTTGTACAATTATACAAAAAAAAAAAAAAGGCAAACTATA 1992
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 1993 GGATAACACAGAGCCCTTTTTGAAAATAAATTGGCATTGGAGTGTTTTACCCTCTAGCTGTTTTACTTAGAATG 2066
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2067 TAACATATGCTGCCTACCCACCTCAAAATGTCTGTACTGCAAGAGGGCCCTGGGCCTCTGCTTTCCATATTCAC 2140
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2141 GTTTGGCCAGAGTTGTAGTCCCAAAGAAGAGCATGGGTGGCAGATGGTAGGGAATTGAACTGGCCTGTGCAATG 2214
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2215 GGCATGGAGCACAAGGGGTCACAGCATGCCTCCTGCCTTACCGTGGCAGTACGGAGACAGTCCAGAACATGGTC 2288
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2289 TTCTTGCCACGGGGTGTTGTTGTCTCTGGTGGTGCTGCATGTCTGTGGCTCACCTTTATTCTTGAAACTGAGGT 2362
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2363 TTACCTGGATCTGGCTACTGAGGCTAGAGCCCACAGCAGAATGGGGTTGGGCCTGTGGCCCCCCAAACTAGGGG 2436
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2437 GTGTGGGTTCATCACAGTGTTGCCTTTTGTCTCCTAAAGATAGGGATCTACTTTTGAAGGGAATTGTTCCTCCC 2510
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2511 AAATAAATTTGCTTTACCTTGGTCCTTTCTTTTGTGCCAGTATTCAAGTGGTATAGCTCTGAGCAGGGTCACAT 2584
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2585 TTGGCCAAACCTGACACTGTCTTGCTGCATTCTCCTTTGGCAAACATCAGGGTCAGAATTCAGGATAGCCCTTC 2658
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2659 CTAGGGCACTGGACTTTCTGGCATGGGGGCTGTGTTTGCACAAGTTATTTTCATGTTACCTGGAGAGTGTCCAG 2732
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2733 AGGCTGCTCTGAGGCTGAGGTGTGTTCCCCCTTGCCTGGTTCCAGCTGTCAGAGGGATACCATCCTAGGGTCTG 2806
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2807 GGAATCCAAGGCCACGAGACTCCTTGGTTTGTGGTCCGAGATCCTGTACTAAGGAGGGTCTGGCCAGAGGAACA 2880
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2881 GACCAGCTTTTGCACAATGAAGCGCAAGGGAACAAGTGGTTTGCCTGGTGTCCTACCTGTCCTGAACCTGGTCC 2954
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 2955 TGTGGGCCATTGAAAAGTTAGATCTGTGATCTCTGGGGTTTTTGTGGCTTTGTTCAATGCTTCCACTCTAGGGC 3028
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 3029 AGGCAGAGCAGTCTATACTCTCCCAAGCCTGCTTGACCTCCAAGTAGAGCTGATACAGAGATCTGTGAATATTG 3102
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 3103 TGATAGAAATTCTTTGGTATTCATACATTTCAGCTGCAAGTCAGCAATTTCCCAGGTACCATGTAAGCTATAAA 3176
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 3177 ACAGTCATTCTTAAAGACAGAGGATAGCTGTGACTCATGGGATCATGAGGTCCATGGCTGGTTGCAGGTTCCCT 3250
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 3251 TTTTCCTTCCTCAGGTTTTGTCTCTTCCTGTGTTGTCCCCAGCAAGGGAGAGACTGTGGGGTGGATTGGGAGAA 3324
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 3325 CAGATTAGGAGTATAGCAAATGAACCCAGAATGGAACAGTGGGGAGCTAACTGTGAATGAGGAGAGTACCTGCT 3398
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 3399 GCAGGACCTGGAGGTCAGGTGTGAATGCTGTATTGGCACAGGGAATAAATATCCTGGCGTCTGGAGCCTTCACC 3472
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 3473 TCTCCGTCAAGTCCTTCCTGTGATACTGCCATGGCACAGGATCTGAGTTGCAGCTCTGCACCCTAAATCACACC 3546
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 3547 CTGGGCATTGTCTGGGCTGCAGGGCTGCCAGGTTCTGTACTTGTGTCCAGCTGTGGCCCTGGATGCTGGAGCTG 3620
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 3621 GAGGGTTTTCTGTGCTCAGACTGTAGCCTGTAGCTCTTGGCCTGTGTAGAGCCCCCTCCTGTGCCCTCAGTGGC 3694
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 3695 TGTCGTTTGTTAACATCATCAGGAAGATGGGAAAGGTCAGGCAGAATTTTTCTGCCCTACAAAGGGTGGAAGAG 3768
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 3769 AAAGGACACAGTATTTTCATGAATTTACCATATATCTTTGTTTTTCTTCAACGAAAAAGTTAATTGAGGCAATG 3842
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 3843 TCATCTGCTCAAAGTTGAGTGGTTTATTCACAATAAACTGTAAGTTTCTGATTATAAAAATGTGTCTAGAGTCT 3916
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 3917 TTCTTCATGGGGTCTAGGTAGTCTTCTGAGCCCACAGGGGTCTGGCCAGTGAACACCAGAGGAGTGCCTTCCTA 3990
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 3991 TCAGTCAGCCCCTTCTTCCAGAGGGCTGTGGAGGCCCCAGTGGCCAAACTCGGCTCTGTTTTCCCTTTCTGGCT 4064
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 4065 GTTGGGGGAGAGGGCACCTGTAAGTGATCCCTGTGGAATGAAGTAGAAAATCCTGCCAGTTTTCCGCTCTCCTC 4138
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 4139 TCCCTCAGTACAGGCTGAATCATTCCCCACCACAGATAGATCCCAGGGTTGTGGTAGAGTACTGATATAAATGT 4212
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 4213 CCCAACCCCCCCATTCTGAGACCTCCGGACCCCTCCAAAGCAGACATGGGAATGTAGGGCTGTGGAATATGGCA 4286
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 4287 GGGTGAACTCCAGCTTCACGGGAGCCCTAAGGGTTATGAAGAGACAACTTGGGGCAGAAACAAGTGTGGAGTCT 4360
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 4361 AATCTCAAGGGTGAAGGACAGGAAATGAGGTTTGGATTGATTAAGGGGGTCCACATTTGTGGTGTCAGAAGTGG 4434
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 4435 CAGTAGTGTCAGTGATAAGTAGCTCAGGGGTAGAGTGGAGGCTCCATAGCTGTGGGCAACATGCACAGGGCACC 4508
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 4509 TGTGGCTAGAAGAGGCCTCATACATTGCCAGTCTGAACTCCGCAGCTCTTCCTCTGGACCTCAGGTGTGCCAAG 4582
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 4583 CCCCACGCTTGGCACCTGGGCATACAGTGGTATGCAAGTGATTCACGTGCTCTAGCTTCCAGGAGCTTCCAATC 4656
Query 1480 -------------------------------------------------------------------------- 1479
Sbjct 4657 CATGGGGAACATAGAAGGAATTGATCACTAGTGAATGTTTGTTTTTTGTTTTGAGACAGTCTCGCTCTATCGCC 4730
Query 1480 ------------- 1479
Sbjct 4731 CAGACTGGAGTAC 4743
