Construct: ORF ccsbBroad304_02426

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006258.1_s304c1, BRDN0000403267
Derived from:
ccsbBroadEn_02426
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARIH2 (10425)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02426
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001317333.2 100% 100%
2 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349209.2 100% 100%
3 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349210.2 100% 100%
4 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349211.2 100% 100%
5 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_006321.4 100% 100%
6 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... XM_024453309.1 100% 100%
7 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349213.2 95.5% 95.3% 962_1030del
8 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349214.2 95.5% 95.3% 962_1030del
9 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... XM_011533267.2 95.5% 95.3% 962_1030del
10 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... XM_011533268.1 95.5% 95.3% 962_1030del
11 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... XM_024453308.1 95.5% 95.3% 962_1030del
12 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349215.2 95.1% 85.6% 1256_1281del;1458_1459ins47
13 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349217.2 83.9% 82.6% (many diffs)
14 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349218.2 83.9% 82.6% (many diffs)
15 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349219.2 83.9% 82.6% (many diffs)
16 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349220.2 83.9% 82.6% (many diffs)
17 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349221.2 83.9% 82.6% (many diffs)
18 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... XM_017005536.2 83.9% 82.6% (many diffs)
19 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349222.2 82.8% 82.7% 0_1ins252;2T>A
20 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349223.2 82.8% 82.7% 0_1ins252;2T>A
21 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349224.2 82.8% 82.7% 0_1ins252;2T>A
22 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349225.2 82.8% 82.7% 0_1ins252;2T>A
23 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349226.2 82.8% 82.7% 0_1ins252;2T>A
24 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... XM_024453310.1 82.8% 82.7% 0_1ins252;2T>A
25 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349216.2 80.1% 78.8% (many diffs)
26 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... XM_011533271.1 80.1% 78.8% (many diffs)
27 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... XM_017005533.2 80.1% 78.8% (many diffs)
28 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... XM_017005534.1 80.1% 78.8% (many diffs)
29 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... XM_017005535.1 80.1% 78.8% (many diffs)
30 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... XM_011533273.1 79.1% 78.8% 0_1ins252;2T>A;710_778del
31 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001317334.2 71.1% 71.1% 0_1ins426
32 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349212.2 71.1% 71.1% 0_1ins426
33 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... XM_024453311.1 68% 67.8% 0_1ins426;536_604del
34 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349227.2 60% 59.8% 0_1ins549;413_481del
35 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... XM_011533276.1 44.7% 44.5% 0_1ins786;176_244del
36 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NR_146083.2 29.2% 1_318del;1207_1358del;1950_5064del
37 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NR_146082.2 28.5% 1_440del;1329_1480del;2072_5186del
38 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NR_146085.2 27.9% (many diffs)
39 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NR_146084.2 27.7% (many diffs)
40 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349228.2 19.1% 17.8% (many diffs)
41 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349229.2 19.1% 17.8% (many diffs)
42 human 10425 ARIH2 ariadne RBR E3 ubiquitin pr... NM_001349230.2 19.1% 17.8% (many diffs)
43 mouse 23807 Arih2 ariadne RBR E3 ubiquitin pr... NM_011790.4 91.4% 98.1% (many diffs)
44 mouse 23807 Arih2 ariadne RBR E3 ubiquitin pr... XM_006511725.2 91.4% 98.1% (many diffs)
45 mouse 23807 Arih2 ariadne RBR E3 ubiquitin pr... XM_006511728.3 77% 81.4% (many diffs)
46 mouse 23807 Arih2 ariadne RBR E3 ubiquitin pr... XM_011242881.2 54.9% 58.6% (many diffs)
47 mouse 23807 Arih2 ariadne RBR E3 ubiquitin pr... XR_871083.2 32.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1545
ORF length:
1479
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc agtggacatg aatagccagg ggtctgacag caatgaagag gactatgacc
121caaattgtga ggaagaggaa gaagaagaag aagacgaccc tggggacata gaggactatt
181acgtgggagt agccagcgat gtggagcagc agggggctga tgcctttgat cccgaggagt
241accagttcac ttgcttgacc tacaaggaat ctgagggtgc cctcaatgag cacatgacca
301gcttagcttc tgtcctaaag gtatctcatt cagttgctaa acttatatta gttaatttcc
361actggcaagt ttcagagata ttggacagat acaagtccaa ttctgctcaa ctgcttgttg
421aggctcgagt tcagcctaat ccatcaaaac atgttcccac atcccatccc cctcaccact
481gtgcagtgtg tatgcagttt gtgcgaaagg aaaacctact ctctctggcc tgtcagcacc
541agttttgccg cagctgctgg gagcagcact gctcagttct cgtcaaggac ggcgtgggcg
601tgggagtctc ttgcatggct caggactgtc cactccgtac accagaggac tttgtgtttc
661cattgcttcc caatgaagaa ttgagagaga aatacaggcg ctacctcttc agggactatg
721tggagagtca ttaccagctc cagctgtgcc ctggtgcaga ctgccccatg gttattcggg
781tacaggagcc tagagctcgc cgagtacagt gcaatcggtg caacgaggtc ttctgtttca
841agtgtcgtca gatgtatcac gcacccacag actgtgccac aatccggaaa tggctcacga
901agtgtgcaga cgactctgaa acagccaact acattagtgc tcacactaaa gactgtccca
961agtgcaacat ctgcattgag aagaatggag gctgcaatca catgcaatgc tccaaatgta
1021aacacgactt ctgctggatg tgtctaggag attggaagac tcatggcagt gaatactatg
1081agtgcagtcg ttacaaggag aatcctgaca tcgtgaacca gagccaacaa gcccaggcga
1141gggaagccct caagaagtac ttattctact ttgagaggtg ggaaaaccac aataaaagct
1201tgcagctaga ggcacagaca taccagcgga ttcacgagaa gattcaggag agggtcatga
1261acaatctggg gacatggatc gactggcagt acctacagaa tgctgccaag ctcttggcca
1321agtgtcgata caccctgcaa tacacctacc catatgcata ttacatggag tccggaccca
1381ggaagaagct gtttgaatac cagcaggctc agctggaggc tgagatcgaa aacctctcat
1441ggaaagtgga gcgtgcagac agctatgaca gaggggactt ggagaaccag atgcatatag
1501cggagcagcg gaggagaacc ctgctgaaag atttccatga cacctaccca actttcttgt
1561acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
1621gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

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