Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02599
- Subject:
- XR_002958244.1
- Aligned Length:
- 3283
- Identities:
- 1302
- Gaps:
- 1849
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTTTTCTTCCCTATTTCCCTGCATTTCTCTTCTGTGCTCACTGCCACACGCAGCTCAGCCTGGGCGGCACAGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGATGCGAGATGCGTCTCTGCTGATCTGAGTCTGCCTGCAGCATGGACCTGGGTCTTCCCTGAAGCATCTCCAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCTGGAGGGACGACTGCCATGATGACAGCACCCCATGAGAAGAAGGACCCAGCCTCCGATTGGCCACACTCTG 222
Query 1 ---------------------------------------------------------------------ATGAC 5
|||||
Sbjct 223 TGTGTCTCTCTATCCTGCCAGCACCGAGGGCTCATCCATCCACAGAGCAGGGCAGTGGGAGGAGACGCCATGAC 296
Query 6 CCCCATCGTCACAGTCCTGATCTGTCTCAGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAGGGACCCTCC 79
|||||||.||||.|||||||||||||||.||||||||||||||||||||||||||||||||||||||..|||||
Sbjct 297 CCCCATCCTCACGGTCCTGATCTGTCTCGGGCTGAGTCTGGGCCCCCGGACCCACGTGCAGGCAGGGCACCTCC 370
Query 80 CCAAGCCCACACTCTGGGCTGAGCCAGGCTCTGTGATCACCCAGGGGAGTCCCGTGACCCTCTGGTGTCAGGGG 153
||||||||||.|||||||||||.|||||||||||||||||||||||||||||.|||||||||.|||||||||||
Sbjct 371 CCAAGCCCACCCTCTGGGCTGAACCAGGCTCTGTGATCACCCAGGGGAGTCCTGTGACCCTCAGGTGTCAGGGG 444
Query 154 ATCCTGGAGACCCAGGAGTACCGTCTGTATAGAGAAAAGAAAACAGCACCCTGGATTACACGGATCCCACAGGA 227
..||.|||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGCCAGGAGACCCAGGAGTACCGTCTATATAGAGAAAAGAAAACAGCACCCTGGATTACACGGATCCCACAGGA 518
Query 228 GATTGTGAAGAAGGGCCAGTTCCCCATCCCATCCATCACCTGGGAACACACAGGGCGGTATCGCTGTTTCTACG 301
|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||.|
Sbjct 519 GCTTGTGAAGAAGGGCCAGTTCCCCATCCCATCCATCACCTGGGAACACACAGGGCGGTATCGCTGTTACTATG 592
Query 302 GTAGCCACACTGCAGGCTGGTCAGAGCCCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACATCAAACCC 375
|||||.|||||||||||.|.||||||..||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTAGCGACACTGCAGGCCGCTCAGAGAGCAGTGACCCCCTGGAGCTGGTGGTGACAGGAGCCTACATCAAACCC 666
Query 376 ACCCTCTCAGCTCTACCCAGCCCTGTGGTGACCTCAGGAGGGAACGTGACCCTCCATTGTGTCTCACAGGTGGC 449
|||||||||||.|..||||||||.|||||||.||||||||||||.||.||||||||.||||.||||||||||||
Sbjct 667 ACCCTCTCAGCCCAGCCCAGCCCCGTGGTGAACTCAGGAGGGAATGTAACCCTCCAGTGTGACTCACAGGTGGC 740
Query 450 ATTTGGCAGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCACAGCCCCGTACCC 523
|||||...||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||.|.|||
Sbjct 741 ATTTGATGGCTTCATTCTGTGTAAGGAAGGAGAAGATGAACACCCACAATGCCTGAACTCCCAGCCCCATGCCC 814
Query 524 ATGGGTGGTCCCGGGCCATCTTCTCTGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTCGTACAGGTGCTATGCT 597
.|||||.||||||.|||||||||||.|||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 815 GTGGGTCGTCCCGCGCCATCTTCTCCGTGGGCCCCGTGAGCCCGAGTCGCAGGTGGTGGTACAGGTGCTATGCT 888
Query 598 TATGACTCGAACTCTCCCCATGTGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGTGTTTCTAA 671
||||||||||||||||||.|||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TATGACTCGAACTCTCCCTATGAGTGGTCTCTACCCAGTGATCTCCTGGAGCTCCTGGTCCTAGGTGTTTCTAA 962
Query 672 GAAGCCATCACTCTCAGTGCAGCCAGGTCCTATAGTGGCCCCTGGGGAGAGCCTGACCCTCCAGTGTGTTTCTG 745
|||||||||||||||||||||||||||||||||.||||||||||.|||||.||||||.||.|||||||..||||
Sbjct 963 GAAGCCATCACTCTCAGTGCAGCCAGGTCCTATCGTGGCCCCTGAGGAGACCCTGACTCTGCAGTGTGGCTCTG 1036
Query 746 ATGTCAGCTACGACAGATTTGTTCTGTATAAGGAGGGAGAACGTGACTTCCTCCAGCTCCCTGGCCCACAGCCC 819
|||...|||||.||||||||||||||||||||||.||.||||||||||||||.||||||.|||||.||||||||
Sbjct 1037 ATGCTGGCTACAACAGATTTGTTCTGTATAAGGACGGGGAACGTGACTTCCTTCAGCTCGCTGGCGCACAGCCC 1110
Query 820 CAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACAGATGCTC 893
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 1111 CAGGCTGGGCTCTCCCAGGCCAACTTCACCCTGGGCCCTGTGAGCCGCTCCTACGGGGGCCAGTACAGATGCTA 1184
Query 894 CGGTGCATACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATCGCAGGACA----- 962
|||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||..|
Sbjct 1185 CGGTGCACACAACCTCTCCTCCGAGTGGTCGGCCCCCAGCGACCCCCTGGACATCCTGATCGCAGGTGAGGAGC 1258
Query 963 -------GTTCCGT--GG---------------CAGACCCTTCATCTCGGTG-----CATCCGGGCCCCACGGT 1007
||||.|| || |||.||||.| |||.| ||.||||||||||||||
Sbjct 1259 CCAGCGGGTTCAGTCAGGGACCCAGGCTCCGCACAGGCCCTGC----CGGGGGAGCTCAGCCGGGCCCCACGGT 1328
Query 1008 GGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCATGGGGGCCGTTCCACACTTTCCTTCTGACCAAGGCGG 1081
|||||||||||||||||||||||||||||||||||||..|||...|.|.||.|||||||||||||||||||.||
Sbjct 1329 GGCCTCAGGAGAGAACGTGACCCTGCTGTGTCAGTCACAGGGATGGATGCAAACTTTCCTTCTGACCAAGGAGG 1402
Query 1082 GAGCAGCTGATGCCCCCCTCCGTCTCAGATCAATACACGAATATCCTAAGTACCAGGCTGAATTCCCTATGAGT 1155
|.||||||||||.|||....|||||.|||||||...||.|||.||..||.|||||||||||||||||.|||.||
Sbjct 1403 GGGCAGCTGATGACCCATGGCGTCTAAGATCAACGTACCAATCTCAAAAATACCAGGCTGAATTCCCCATGGGT 1476
Query 1156 CCTGTGACCTCAGCCCACTCGGGGACCTACAGGTGCTAC--------GGCTCACTCAGCTC-----CAAC---C 1213
|||||||||||||||||..|||||||||||||| || ||| |.|||||| |||| |
Sbjct 1477 CCTGTGACCTCAGCCCATGCGGGGACCTACAGG----ACCGTCTGGGGGC---CCCAGCTCCCCGACAACAGGC 1543
Query 1214 CCTACCT-----GCTG----------------TCTCACCCC-----AGT--GACTCCCTGGAGCTCATGGTCTC 1259
||.|||| .||| .|||||||| .|| || ||||..||| ||||||
Sbjct 1544 CCCACCTCCACATCTGGCCCTGAGGACCAGCCCCTCACCCCCACCGGGTCGGA-TCCCCAGAG----TGGTCT- 1611
Query 1260 AGGA--GCAGCTGAG---------------------------------AC------------------------ 1274
.||| |||.|||.| ||
Sbjct 1612 GGGAAGGCACCTGGGGGTTGTGATCGGCATCTTGGTGGCCGTCATCCTACTGCTCCTCCTCCTCCTCCTCCTCT 1685
Query 1275 -CCTCAGCCCACCACA-------------AAAC--------------------AAGTCCGA-TTCCAA------ 1307
|||||.||..|.||| |||| |||.|.|| ||||||
Sbjct 1686 TCCTCATCCTCCGACATCGACGTCAGGGCAAACACTGGACATCGACCCAGAGAAAGGCTGATTTCCAACATCCT 1759
Query 1308 -----GGC--TGGAGC---AGCTAACA-------CCCT------------CAGCCCATC--------------- 1337
||| |||.|| |||..||| .||| |||||||.|
Sbjct 1760 GCAGGGGCTGTGGGGCCAGAGCCCACAGACAGAGGCCTGCAGTGGAGGTCCAGCCCAGCTGCCGATGCCCAGGA 1833
Query 1338 ACAAAAC---------------AAG-----ACTGCCT--------------------CAC-------------- 1357
|.||||| ||| ||.|||| |||
Sbjct 1834 AGAAAACCTCTATGCTGCCGTGAAGCACACACAGCCTGAGGATGGGGTGGAGATGGACACTCGGCAGAGCCCAC 1907
Query 1358 ---------ACCCCCAGGATTACACAGTG----------------------------------GAGAA------ 1382
||||||||| ||||| |||||
Sbjct 1908 ACGATGAAGACCCCCAGG------CAGTGACGTATGCCGAGGTGAAACACTCCAGACCTAGGAGAGAAATGGCC 1975
Query 1383 TCT----CATCCGCATGGGCATAGCTGGCTTGG----TCCTGG------------------------------- 1417
||| |.|||.|| |||.||.|| ||||||
Sbjct 1976 TCTCCTCCTTCCCCA---------CTGTCTGGGGAATTCCTGGACACAAAGGACAGACAGGCGGAAGAGGACAG 2040
Query 1418 -----TGGTC-CTCGGGATTCTGCTATTTGAGGC------------------------TCAGCACAGC------ 1455
|||.| ||..||.|.|||| ||.|||.|| .|.|||||||
Sbjct 2041 GCAGATGGACACTGAGGCTGCTGC-ATCTGAAGCCCCCCAGGATGTGACCTACGCCCAGCTGCACAGCTTGACC 2113
Query 1456 --CAGA---GA--------AGCCTC------------------------------------------------- 1467
|||| || ||||||
Sbjct 2114 CTCAGACGGGAGGCAACTGAGCCTCCTCCATCCCAGGAAGGGCCCTCTCCAGCTGTGCCCAGCATCTACGCCAC 2187
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2188 TCTGGCCATCCACTAGCCCAGGGGGGGACGCAGACCCCACACTCCATGGAGTCTGGAATGCATGGGAGCTGCCC 2261
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2262 CCCCAGTGGACACCATTGGACCCCACCCAGCCTGGATCTACCCCAGGAGACTCTGGGAACTTTTAGGGGTCACT 2335
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2336 CAATTCTGCAGTATAAATAACTAATGTCTCTACAATTTTGAAATAAAGCAACAGACTTCTCAATAATCAATGAA 2409
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2410 GTAGCTGAGAAAACTAAGTCAGAAAGTGCATTAAACTGAATCACAATGTAAATATTACACATCAAGCGATGAAA 2483
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2484 CTGGAAAACTACAAGCCACGAATGAATGAATTAGGAAAGAAAAAAAGTAGGAAATGAATGATCTTGGCTTTCCT 2557
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2558 ATAAGAAATTTAGGGCAGGGCACGGTGGCTCACGCCTGTAATTCCAGCACTTTGGGAGGCCGAGGCGGGCAGAT 2631
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2632 CACGAGTTCAGGAGATCGAGACCATCTTGGCCAACATGGTGAAACCCTGTCTCTCCTAAAAATACAAAAATTAG 2705
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2706 CTGGATGTGGTGGCAGTGCCTGTAATCCCAGCTATTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCAGGGAG 2779
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2780 TCAGAGGTTTCAGTGAGCCAAGATCGCACCACTGCTCTCCAGCCTGGCGACAGAGGGAGACTCCATCTCAAATT 2853
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2854 AAAAAAAAAAAAAAAAAAGAAAGAAAAAGAGAAAAAAGAAATTTAGAAGAATAACAAGTTATTCCAAATGAAGG 2927
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2928 CGTAAGAAAGGGAATAATAACAATAATAAGAGGAGTTGTTCATGAGGAAAAACCAAAGCTTGAAAATTCAACAA 3001
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3002 AGCCAGTGAAGCTCATTCTTGAAAACATGAATCACACTCATGAATTCTAACTACAATGAAAAAGAGAAAGAAAG 3075
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3076 AGCAGGCATGCATTTCCATATGGGAGTGAGCCAGCAGACAGCCCTACAGATCGTACACACGTTTTCCAAAACTA 3149
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3150 ACAATGGAACAGGCGGCAAACCTATGCCAATATACTAGAAATTGCAGATTAAATAGATGAAATATTCTAAACTG 3223
Query 1468 --------------------------- 1467
Sbjct 3224 GAGTTTACATAATGAACATAAGAGTAA 3250
