Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02663
- Subject:
- XR_002957830.1
- Aligned Length:
- 3945
- Identities:
- 1368
- Gaps:
- 2514
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGCTCACCGCCGCTTCCGGTCCGCGTGAGGTGCATTCTCGCGCCGGTGGCGAGGTTAGGGCCCGCGTTGCGAC 74
Query 1 -----------------------------------------------ATGGCCACTGACTCATGGGCCCTGGCG 27
||||||||.|||||.||||||||||||
Sbjct 75 GTGGTGCAGCGCATATTTTCACAAGTGGGTCTCCCTTGTCCGGGACTATGGCCACCGACTCGTGGGCCCTGGCG 148
Query 28 GTGGACGAGCAGGAAGCTGCGGCTG---AGTCGTTGAGCAACTTGCATCTTAAGGAAGAGAAAATCAAACCAGA 98
||||||||||||||| ||||||| |||||.|||.|||.|||||..|.||||||||||||.|||||.||||
Sbjct 149 GTGGACGAGCAGGAA---GCGGCTGTCAAGTCGATGACCAATTTGCAGATCAAGGAAGAGAAAGTCAAAGCAGA 219
Query 99 TACCAATGGTGCTGTTGTCAAGACCAATGCCAATGCAGAGAAGACAGATGAAGAAGAGAAAGAGGACAGAGCTG 172
||||||||| |.||.||||.||||.|.|||.|||.|||||.|||||||||||.|||||||||||||||||||
Sbjct 220 TACCAATGG---TATTATCAAAACCAGTACCACTGCCGAGAAAACAGATGAAGAGGAGAAAGAGGACAGAGCTG 290
Query 173 CCCAGTCCTTACTCAACAAGCTGATCAGAAGCAACCTTGTTGATAACACAAACCAAGTGGAAGTCCTGCAGCGG 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 291 CCCAGTCCTTACTCAACAAGCTGATCAGAAGCAACCTTGTTGATAACACAAACCAAGTGGAAGTCCTGCAACGG 364
Query 247 GATCCAAACTCCCCTCTGTACTCGGTGAAGTCTTTTGAAGAGCTTCGGCTGAAACCACAGCTTCTCCAAGGAGT 320
||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||
Sbjct 365 GATCCAAACTCCCCTCTGTACTCGGTGAAGTCGTTTGAAGAGCTTCGGCTGAAACCACAGCTTCTCCAGGGAGT 438
Query 321 CTATGCCATGGGTTTCAATCGTCCATCCAAGATACAAGAGAACGCATTGCCACTGATGCTTGCTGAGCCCCCAC 394
||||||||||||.||||||||.||.|||||||||||||||||||||||.||..|||||||||||||.|||||||
Sbjct 439 CTATGCCATGGGCTTCAATCGACCCTCCAAGATACAAGAGAACGCATTACCCATGATGCTTGCTGAACCCCCAC 512
Query 395 AGAACTTAATTGCCCAATCTCAGTCTGGTACTGGTAAAACAGCTGCCTTCGTGCTGGCCATGCTTAGCCAAGTA 468
||||..|.||||||||.|||||||||||.||||||||||||||||||||.||..|.||||||||.||||.|||.
Sbjct 513 AGAATCTGATTGCCCAGTCTCAGTCTGGCACTGGTAAAACAGCTGCCTTTGTCTTAGCCATGCTCAGCCGAGTG 586
Query 469 GAACCTGCAAACAAATACCCCCAGTGTCTATGTCTCTCCCCAACGTATGAGCTCGCCCTCCAAACAGGAAAAGT 542
||.||..||.|||.|||||||||||||||.||.|||||||||||.||||||||.||.||.||||||||||||||
Sbjct 587 GAGCCATCAGACAGATACCCCCAGTGTCTGTGCCTCTCCCCAACATATGAGCTGGCGCTTCAAACAGGAAAAGT 660
Query 543 GATTGAACAAATGGGCAAATTTTACCCTGAACTGAAGCTAGCTTATGCTGTTCGAGGCAATAAATTGGAAAGAG 616
||||||.||.|||||||||||||||||.|||||||||||.||.|||||.|||||||||||||||||||||||||
Sbjct 661 GATTGAGCAGATGGGCAAATTTTACCCAGAACTGAAGCTTGCCTATGCCGTTCGAGGCAATAAATTGGAAAGAG 734
Query 617 GCCAGAAGATCAGTGAGCAGATTGTCATTGGCACCCCTGGGACTGTGCTGGACTGGTGCTCCAAGCTCAAGTTC 690
|||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 735 GCCAGAAGATCAGTGAGCAGATTGTCATTGGCACCCCTGGGACCGTGCTGGACTGGTGCTCCAAGCTCAAGTTC 808
Query 691 ATTGATCCCAAGAAAATCAAGGTGTTTGTTCTGGATGAGGCTGATGTCATGATAGCCACTCAGGGCCACCAAGA 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 ATTGATCCCAAGAAAATCAAGGTGTTTGTTCTGGATGAGGCTGATGTCATGATAGCCACTCAGGGCCACCAAGA 882
Query 765 TCAGAGCATCCGCATCCAGAGGATGCTGCCCAGGAACTGCCAGATGCTGCTTTTCTCCGCCACCTTTGAAGACT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 883 TCAGAGCATCCGCATCCAGAGGATGCTGCCCAGGAACTGCCAGATGCTGCTTTTCTCCGCCACCTTTGAAGACT 956
Query 839 CTGTGTGGAAGTTTGCCCAGAAAGTGGTCCCAGACCCAAACGTTATCAAACTGAAGCGTGAGGAAGAGACCCTG 912
||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 957 CTGTGTGGAAGTTTGCCCAGAAAGTGGTCCCAGACCCAAATGTTATCAAACTGAAGCGTGAGGAAGAGACCCTG 1030
Query 913 GACACCATCAAGCAGTACTATGTCCTGTGCAGCAGCAGAGACGAGAAGTTCCAGGCCTTGTGTAACCTCTACGG 986
||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 GATACCATCAAGCAGTACTATGTCCTGTGCAGCAGCAGAGACGAGAAGTTCCAGGCCTTGTGTAACCTCTACGG 1104
Query 987 GGCCATCACCATTGCTCAAGCCATGATCTTCTGCCATACTCGCAAAACAGCTAGTTGGCTGGCAGCAGAGCTCT 1060
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105 GGCCATCACCATTGCTCAAGCCATGATCTTCTGCCATACTCGCAAAACAGCTAGTTGGCTGGCAGCAGAGCTCT 1178
Query 1061 CAAAAGAAGGCCACCAGGTGGCTCTGCTGAGTGGGGAGATGATGGTGGAACAGAGGGCTGCAGTGATTGAGCGC 1134
|||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||
Sbjct 1179 CAAAAGAAGGCCACCAGGTGGCTCTGCTGAGTGGGGAGATGATGGTGGAGCAGAGGGCTGCGGTGATTGAGCGC 1252
Query 1135 TTCCGAGAGGGCAAAGAGAAGGTTTTGGTGACCACCAACGTGTGTGCCCGC----------------------- 1185
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TTCCGAGAGGGCAAAGAGAAGGTTTTGGTGACCACCAACGTGTGTGCCCGCGGTGAGCAGAGGACGTGTCCCAC 1326
Query 1186 -------------------------------------------------------------------------- 1185
Sbjct 1327 CTGGTCTGCCAGGCTCGGGGTCCCAGGCCCAATTAGAGCCAGAAATCCTTGTATACAGGGAAGTCGGATGGTCT 1400
Query 1186 -------------------------------------------------------------------------- 1185
Sbjct 1401 CAGGGAGATGGGTGGGGTTGGTGACACTATTCCTTTCTAGGAGAGACTGTTTGGATTTCCCTGAGGTGGTAAGA 1474
Query 1186 -------------------------------------------------------------------------- 1185
Sbjct 1475 ACTCACACATGCCAGGTGCGGTGGCTCATGCCTGCAATCCCAAGGCAGGAAAATTGCTTGAACCCTGGAGACAG 1548
Query 1186 -------------------------------------------------------------------------- 1185
Sbjct 1549 AGGTTGCAGTGAGCCGAGAATGTGCTATAGCACTCCATCCTGGGTGACAGAGTGAGACTCTGTCTCCAAAAAAA 1622
Query 1186 -------------------------------------------------------------------------- 1185
Sbjct 1623 AAAAGGAAGAGGGCAGGCCCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGAATCAC 1696
Query 1186 -------------------------------------------------------------------------- 1185
Sbjct 1697 CTGAGGTCAGGAATTCGAGACCAGCCTGACCAATATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGC 1770
Query 1186 -------------------------------------------------------------------------- 1185
Sbjct 1771 CGGGCGTGGTGGCATGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGACAGGAGAATCGCTTGAACCCGGGAG 1844
Query 1186 -------------------------------------------------------------------------- 1185
Sbjct 1845 GTGGAGGTTACGGTGAGTGAGATCGCGCCATTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCGTCTCAAAA 1918
Query 1186 -------------------------------------------------------------------------- 1185
Sbjct 1919 ATAAAAAAAGAAAGAAAGAAAAGGAACTCCCGCAGAAACCAGTAGTCCTGACTTGGTGGAAGGAAATGTACAGG 1992
Query 1186 -------------------------------------------------------------------------- 1185
Sbjct 1993 CATCTGACTGGTAGAGAACGGAGCCTACTCTTCCAGGGGCGCCCATCTCCAGAACATTGTGTCTCCCAGAGGAT 2066
Query 1186 -------------------------------------------------------------------------- 1185
Sbjct 2067 TACCGACTGATCTCATGATTTTGTTGGCACTTGCCAAAGTTCTCTTCTTTTCCTCTGGGTTCTGTTGCCTGCCT 2140
Query 1186 -------------------------------------------------------------------------- 1185
Sbjct 2141 ATATGTGTGCCCTCTCTTGTACCCAGAGTTGGCCTGTCCCAAATTCTTTCCCTCTATCCCAAAGTTGGTACGCA 2214
Query 1186 -------------------------------------------------------------------------- 1185
Sbjct 2215 TTGACCTACCTATGGATGACAGTGATTTCTGTCTCCTGTCCTTAGTCCTCTCAGCCTCCAACTCTCCTTCCTGC 2288
Query 1186 -GGCATTGATGTTGAACAAGTGTCTGTCGTCATCAACTTTGATCTTCCCGTGGACAAGGACGGGAATCCTGACA 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2289 AGGCATTGATGTTGAACAAGTGTCTGTCGTCATCAACTTTGATCTTCCCGTGGACAAGGACGGGAATCCTGACA 2362
Query 1259 ATGAGACCTACCTGCACCGGATCGGGCGCACGGGCCGCTTTGGCAAGAGGGGCCTGGCAGTGAACATGGTGGAC 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2363 ATGAGACCTACCTGCACCGGATCGGGCGCACGGGCCGCTTTGGCAAGAGGGGCCTGGCAGTGAACATGGTGGAC 2436
Query 1333 AGCAAGCACAGCATGAACATCCTGAACAGAATCCAGGAGCATTTTAATAAGAAGATAGAAAGATTGGACACAGA 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2437 AGCAAGCACAGCATGAACATCCTGAACAGAATCCAGGAGCATTTTAATAAGAAGATAGAAAGATTGGACACAGA 2510
Query 1407 TGATTTGGACGAGATTGAGAAAATAGCCAAC------------------------------------------- 1437
|||||||||||||||||||||||||||||||
Sbjct 2511 TGATTTGGACGAGATTGAGAAAATAGCCAACTGAGAAGCTCCACCAGCCACTGATGCCAGCCCTGGCACTGCCC 2584
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2585 CTGCACAGGAGACAAGTGCATTTAGGGCACAGGCCCCGACATCACCCCAAGGACAACGGCAGAAGTAGAGAGAA 2658
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2659 ACTACCTACCTCACTTCAAATTATGTTTGGACTTGACAAAAATAGGTGCAAATGATGGGGGGCAATAGAAGAAA 2732
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2733 AAATTTGCATTTTGGAAAATTGGGTCCTTTCCCCACTTTTTTAAAGCCACATTCCCCCATCTTTATAATAATCT 2806
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2807 GGTCACAGTGGTAGTCGCTGGCCCCAGGACCCCCTCCTGATTTTGGCTAGGCATCGTGGAACCAGCTCCAGCCC 2880
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2881 CTGAAGAAACGATAGATGTGCAGGTTGTGCGGAAGAGGCTGAGTGGAAAATGGTGTGAGCCCCACCGCTGTGCA 2954
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 2955 TCGAATGAGGGAAGTGGCAGCAGAGAGGCCAGAGCTGCCCCCTCTCTGTCTCTTCAATGGACCCTTCACAAGTG 3028
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3029 TTTCTCCTGCCCTTGGGGCTGTCTTCCTTCTCCTGAAATCCAGAGACTTTCTTGCTCATCCCTTCTCCCTTTCA 3102
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3103 CTTCTGTTCTCTGCTGCAGAAAGCAGACTTGCATATCCCTGATGAGCAGCTCGGCTACTTTTGTAAACTTCAGA 3176
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3177 TTTGGAGAGAAACACGAAAGTCTGAATCCTGACCCCTTGAGAGAGAGTGATCTGGCGAGGGCCGATGAAGGGGC 3250
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3251 TGGGCCTGGTCTTGCCTTCTCTTCTCTCGGTTGCTCCCTCTGCCTAGGCCCCTGGTACTCAGTCACGGCAGCCA 3324
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3325 GGAGACCCCAGGTGAGTTTCTGAGCGCATACGTAGTTGGTTCTTACCCCCAGGTGTCACACGGGGCCGAGAGCT 3398
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3399 GAGCAAGAATTTGGAATGGAAGTTATGACCAAGGGAATTATGCTGTTCATTTATAATAGTGGACATTATGGAGA 3472
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3473 GCTCTGATTCCTACATAATATGAATAAGGATGGATAGGCCGGGCGTGGTGGCTCATGCCTATAATCCCAGCACG 3546
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3547 TTGGGAGGCTGAGGCGGGCGGATCGGTTGAGCTCAGGCGTTCGGGACCAGCCTGGCCAACATGATGAAACCCCG 3620
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3621 TCTCTACCAAAAATAGAAAAAAATATAGCCGGGCCTGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCT 3694
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3695 GAGGTAGGAGGATCGCTTGAGCCTGGGTAGAGGCTGCTGTGAGCTGAAATGGCGCCACTGCACTCCAGCCTGGG 3768
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3769 TAACAGAGCGAGACCCCGACTCAATAAATAAATAAGGATGGATAAATTGTAGCGTATGCACCATTCATTATGCT 3842
Query 1438 -------------------------------------------------------------------------- 1437
Sbjct 3843 AAGACATTTTAAAGTAATTATGAGAAACGCTCTACTAATGATTTGTTTTTATTTGTATTTTTCTGCTTATTAGA 3916
Query 1438 ----------------------- 1437
Sbjct 3917 CAAATATATACTCATTTTAAAAA 3939
