Nucleotide Global Alignment

Description

Query:
ccsbBroad304_02688
Subject:
NM_001359088.1
Aligned Length:
1812
Identities:
1531
Gaps:
204

Alignment

Query    1  ---------------ATGA------------------GAGACTCTACAGGGGCAGGTAATTCACTGGTCCACAA  41
                           ||||                  .||||||||||||.|||||||||||||||||||||||
Sbjct    1  ATGCCTCCCCCTTCCATGATGGACTGTACTCTGAAACTAGACTCTACAGGAGCAGGTAATTCACTGGTCCACAA  74

Query   42  GCGGTCTCCTTTACGTCGAAACCAAAAGACCCCAACATCCTTGACCAAGCTGTCTTTACAGGATGGACATAAAG  115
            |||||||||||||||||||||||||||||||.||.|||||||||.|||||||||||||||||||||||||||||
Sbjct   75  GCGGTCTCCTTTACGTCGAAACCAAAAGACCTCAGCATCCTTGAACAAGCTGTCTTTACAGGATGGACATAAAG  148

Query  116  CCAAAAAGCCAGCATGTAAATTTGAAGAGGGTCAGGATGTCCTAGCTAGATGGTCAGATGGCTTGTTTTATCTT  189
            |||||||.||||||||||||||||||||||||||.||||||.||||||||||||||||||||||||||||||||
Sbjct  149  CCAAAAAACCAGCATGTAAATTTGAAGAGGGTCAAGATGTCTTAGCTAGATGGTCAGATGGCTTGTTTTATCTT  222

Query  190  GGCACTATCAAAAAGATAAACATATTGAAACAGAGCTGCTTCATCATATTTGAAGACAGTTCTAAATCCTGGGT  263
            ||.||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||
Sbjct  223  GGAACTATCAAAAAGATAAACATATTGAAACAGAGCTGCTTCATCATATTTGAGGACAGTTCCAAATCCTGGGT  296

Query  264  TCTCTGGAAGGACATTCAAACAGGAGCCACTGGAAGTGGGGAAATGGTCTGTACAATATGTCAAGAAGAGTATT  337
            |||||||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TCTCTGGAAGGACATCCAAACAGGAGCCACTGGGAGTGGGGAAATGGTCTGTACAATATGTCAAGAAGAGTATT  370

Query  338  CAGAAGCTCCCAATGAAATGGTTATATGTGACAAGTGTGGCCAAGGATATCATCAGTTGTGTCACACACCTCAT  411
            |||||||||||||||||||||||||||||||.||||||||.|||||||||||||||.|||||||||||||||||
Sbjct  371  CAGAAGCTCCCAATGAAATGGTTATATGTGATAAGTGTGGTCAAGGATATCATCAGCTGTGTCACACACCTCAT  444

Query  412  ATTGATTCCAGTGTGATTGATTCAGATGAAAAATGGCTCTGTCGGCAGTGTGTTTTTGCAACAACAACAAAGAG  485
            |||||.||.|||||||||||||||||||||||.|||||.|||||.|||||.||||||||||||||.||||||||
Sbjct  445  ATTGACTCGAGTGTGATTGATTCAGATGAAAAGTGGCTTTGTCGACAGTGCGTTTTTGCAACAACTACAAAGAG  518

Query  486  GGGTGGTGCACTTAAGAAAGGACCAAATGCCAAAGCATTGCAAGTCATGAAGCAGACATTACCCTATAGTGTGG  559
            |||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GGGTGGTGCGCTTAAGAAAGGACCAAATGCCAAAGCATTGCAAGTCATGAAGCAGACATTACCCTATAGTGTGG  592

Query  560  CAGACCTTGAATGGGATGCAGGTCATAAAACCAATGTCCAGCAGTGTTACTGCTATTGTGGAGGCCCTGGAGAC  633
            |.||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||||||||||||||
Sbjct  593  CTGACCTTGAATGGGATGCAGGCCATAAAACCAATGTCCAGCAGTGCTACTGCTATTGTGGAGGCCCTGGAGAC  666

Query  634  TGGTATTTGAAGATGCTACAGTGCTGCAAATGTAAGCAGTGGTTTCATGAGGCTTGTGTGCAATGCCTTCAAAA  707
            ||||||||.||||||||.||||||||||||||||||||||||||||||||.||||||||.|||||||||||.||
Sbjct  667  TGGTATTTAAAGATGCTGCAGTGCTGCAAATGTAAGCAGTGGTTTCATGAAGCTTGTGTCCAATGCCTTCAGAA  740

Query  708  GCCAATGCTATTTGGAGACAGATTTTATACGTTTATATGCTCTGTCTGCAGTTCTGGACCAGAATACCTCAAAC  781
            |||||||||.||||||||.||.||||||||.|||||.|||||||||||||||||||||||||||||||||||||
Sbjct  741  GCCAATGCTGTTTGGAGATAGGTTTTATACATTTATTTGCTCTGTCTGCAGTTCTGGACCAGAATACCTCAAAC  814

Query  782  GTCTACCATTACAGTGGGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCATAAGAAGAAATAC  855
            |||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct  815  GTCTACCGTTACAGTGGGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCACAAGAAGAAATAC  888

Query  856  TTTGATTCTGAACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGGAGAGCTGGCAGA  929
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TTTGATTCTGAACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGGAGAGCTGGCAGA  962

Query  930  CACACCAAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT--------------  989
            ||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct  963  CACACCCAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCATGTTTATGTCTGGGA  1036

Query  990  --------------------------------------------------------------------------  989
                                                                                      
Sbjct 1037  AAGAAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCAAATGTGGCTTTC  1110

Query  990  --------------------------------------------------------------------------  989
                                                                                      
Sbjct 1111  AAAGCAGAGAAAGAACCAGAAGGAACATCCCATGAATTTAAAATTAAAGGCAGAAAGGCATCCAAACCTACATC  1184

Query  990  ---------GGAAGTAAGCAATGGCATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTCCACCTGGCCCAT  1054
                     |||||||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||||
Sbjct 1185  TGACTCAAGGGAAGTAAGCAATGGGATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTCCTCCTGGCCCAT  1258

Query 1055  ATACAAGAAAAATGATTCAAAAAACTGCTGAGCCACTTTTGGATAAGGAATCAATTTCAGAGAATCCTACTTTG  1128
            |||||||||||||||||||||||||||||||||.||.||||||||||||||||.||||||||||||||||.|||
Sbjct 1259  ATACAAGAAAAATGATTCAAAAAACTGCTGAGCTACCTTTGGATAAGGAATCAGTTTCAGAGAATCCTACGTTG  1332

Query 1129  GATTTACCTTGTTCTATAGGGAGAACTGAGGGAACTGCACATTCATCCAATACCTCAGATGTGGATTTCACGGG  1202
            ||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||..|||||||
Sbjct 1333  GATTTACCTTGTTCTATAGGGAGAACTGAGGGAATTGCACATTCATCCAATACCTCAGATGTGGACCTCACGGG  1406

Query 1203  TGCTTCCAGTGCAAAAGAAACTACCTCGTCTAGCATTTCCAGGCATTATGGATTATCTGACTCCAGAAAAAGAA  1276
            |||||||||||||||.||||||||||||.||||||||||||||||||.|||||||||.|||||.||||||||||
Sbjct 1407  TGCTTCCAGTGCAAACGAAACTACCTCGGCTAGCATTTCCAGGCATTGTGGATTATCAGACTCTAGAAAAAGAA  1480

Query 1277  CGCGTACAGGAAGATCTTGGCCTGCTGCAATACCACATTTGCGGAGAAGAAGAGGTCGTCTTCCAAGAAGAGCA  1350
            |.||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||.||||||.||||||||
Sbjct 1481  CTCGCACAGGAAGATCATGGCCTGCTGCAATACCACATTTGCGGAGAAGAAGAGGTCGCCTTCCACGAAGAGCA  1554

Query 1351  CTCCAGACTCAGAACTCAGAAATTGTAAAAGATGATGAAGGCAAAGAAGATTATCAGTTTGATGAACTCAACAC  1424
            |||||||||||||||||||||.||||.|||||||||||||||||||||||||||||||||||.|||||.|||||
Sbjct 1555  CTCCAGACTCAGAACTCAGAAGTTGTGAAAGATGATGAAGGCAAAGAAGATTATCAGTTTGAAGAACTTAACAC  1628

Query 1425  AGAGATTCTGAATAACTTAGCAGATCAGGAGTTACAACTCAATCATCTAAAGAACTCCATTACCAGTTATTTTG  1498
            |||.|||||||||||||||||||||||||||||.||.||||||||.||.||.||||||||.||.||||||||||
Sbjct 1629  AGAAATTCTGAATAACTTAGCAGATCAGGAGTTGCAGCTCAATCACCTGAAAAACTCCATCACTAGTTATTTTG  1702

Query 1499  GTGCTGCAGGTAGAATAGCATGTGGCGAAAAATACCGAGTTTTGGCACGTCGGGTGACACTTGATGGAAAGGTG  1572
            ||||.||||||||||||||||||||||||||||||.||||||||||.|||||||||||.||||||||.||||||
Sbjct 1703  GTGCCGCAGGTAGAATAGCATGTGGCGAAAAATACAGAGTTTTGGCTCGTCGGGTGACGCTTGATGGGAAGGTG  1776

Query 1573  CAGTATCTTGTGGAATGGGAAGGAGCAACTGCATCC  1608
            ||||||||||||||||||||||||||.|||||||||
Sbjct 1777  CAGTATCTTGTGGAATGGGAAGGAGCGACTGCATCC  1812

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