Nucleotide Global Alignment

Description

Query:
ccsbBroad304_02688
Subject:
NR_152817.1
Aligned Length:
4724
Identities:
1532
Gaps:
3116

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATTCGGCCCCGGAGTAGCTCCGCGCTCCCAGAATGCACCGCTAGTCCGCGGGAAACCAAAATGGCGAAGGGCTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TTGCGAAGTGGTCTGTGTTTGAGGCCGGTGTGAGCACGCACATTCTCCTTCCTAACCCTCGTCCCCAAGGAACT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGGTGTGTGTGTGCGTGTGCGCAGGGCTCCCGCTGGGGCGGGTGCCCAGGGAGTGCCCGGACTCGCGGGGGAGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GCCCACGGGAACGAGATTGCTTCTATTTTCCTGTATGAAGCGGTTGGCACCACTTAAGTGACCGAATGAGAAAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GTTTAACTGAGGAGGGAAGACCCACCCTGACTATGTGAGGCCACCATACCCATGGGCTGGGGTCCTGGATTGAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCAAATGGAGGAAGCAAGCTGAGCATGAACATTGACCTTCCTGACTGCAGATATCAGTGCGATAGCTGTCTCCT  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  GCTTCTTCTACTATGCCTCCCCCTTCCATGATGGACTGTACTCTGAAACTCTGCCGAGTGTTTCATCATGGACT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  AGAGTAGTGGCAAGGGTACTGGAAACGTGATTGTGGTGGAGGTGTCATGGCTGATTGCTGTTACCAGAGAAGAG  592

Query    1  -----------------------------AT----------------GAGAGACTCTACAGGGGCAGGTAATTC  29
                                         ||                |||||||||||||||.|||||||||||
Sbjct  593  GAGGGAAATTGGAGCGGCACAATAGAGGGATGAAAGTTCCTACTAGGGAGAGACTCTACAGGAGCAGGTAATTC  666

Query   30  ACTGGTCCACAAGCGGTCTCCTTTACGTCGAAACCAAAAGACCCCAACATCCTTGACCAAGCTGTCTTTACAGG  103
            |||||||||||||||||||||||||||||||||||||||||||.||.|||||||||.|||||||||||||||||
Sbjct  667  ACTGGTCCACAAGCGGTCTCCTTTACGTCGAAACCAAAAGACCTCAGCATCCTTGAACAAGCTGTCTTTACAGG  740

Query  104  ATGGACATAAAGCCAAAAAGCCAGCATGTAAATTTGAAGAGGGTCAGGATGTCCTAGCTAGATGGTCAGATGGC  177
            |||||||||||||||||||.||||||||||||||||||||||||||.||||||.||||||||||||||||||||
Sbjct  741  ATGGACATAAAGCCAAAAAACCAGCATGTAAATTTGAAGAGGGTCAAGATGTCTTAGCTAGATGGTCAGATGGC  814

Query  178  TTGTTTTATCTTGGCACTATCAAAAAGATAAACATATTGAAACAGAGCTGCTTCATCATATTTGAAGACAGTTC  251
            ||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct  815  TTGTTTTATCTTGGAACTATCAAAAAGATAAACATATTGAAACAGAGCTGCTTCATCATATTTGAGGACAGTTC  888

Query  252  TAAATCCTGGGTTCTCTGGAAGGACATTCAAACAGGAGCCACTGGAAGTGGGGAAATGGTCTGTACAATATGTC  325
            .||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||
Sbjct  889  CAAATCCTGGGTTCTCTGGAAGGACATCCAAACAGGAGCCACTGGGAGTGGGGAAATGGTCTGTACAATATGTC  962

Query  326  AAGAAGAGTATTCAGAAGCTCCCAATGAAATGGTTATATGTGACAAGTGTGGCCAAGGATATCATCAGTTGTGT  399
            |||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||.|||||
Sbjct  963  AAGAAGAGTATTCAGAAGCTCCCAATGAAATGGTTATATGTGATAAGTGTGGTCAAGGATATCATCAGCTGTGT  1036

Query  400  CACACACCTCATATTGATTCCAGTGTGATTGATTCAGATGAAAAATGGCTCTGTCGGCAGTGTGTTTTTGCAAC  473
            |||||||||||||||||.||.|||||||||||||||||||||||.|||||.|||||.|||||.|||||||||||
Sbjct 1037  CACACACCTCATATTGACTCGAGTGTGATTGATTCAGATGAAAAGTGGCTTTGTCGACAGTGCGTTTTTGCAAC  1110

Query  474  AACAACAAAGAGGGGTGGTGCACTTAAGAAAGGACCAAATGCCAAAGCATTGCAAGTCATGAAGCAGACATTAC  547
            |||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  AACTACAAAGAGGGGTGGTGCGCTTAAGAAAGGACCAAATGCCAAAGCATTGCAAGTCATGAAGCAGACATTAC  1184

Query  548  CCTATAGTGTGGCAGACCTTGAATGGGATGCAGGTCATAAAACCAATGTCCAGCAGTGTTACTGCTATTGTGGA  621
            |||||||||||||.||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||
Sbjct 1185  CCTATAGTGTGGCTGACCTTGAATGGGATGCAGGCCATAAAACCAATGTCCAGCAGTGCTACTGCTATTGTGGA  1258

Query  622  GGCCCTGGAGACTGGTATTTGAAGATGCTACAGTGCTGCAAATGTAAGCAGTGGTTTCATGAGGCTTGTGTGCA  695
            ||||||||||||||||||||.||||||||.||||||||||||||||||||||||||||||||.||||||||.||
Sbjct 1259  GGCCCTGGAGACTGGTATTTAAAGATGCTGCAGTGCTGCAAATGTAAGCAGTGGTTTCATGAAGCTTGTGTCCA  1332

Query  696  ATGCCTTCAAAAGCCAATGCTATTTGGAGACAGATTTTATACGTTTATATGCTCTGTCTGCAGTTCTGGACCAG  769
            |||||||||.|||||||||||.||||||||.||.||||||||.|||||.|||||||||||||||||||||||||
Sbjct 1333  ATGCCTTCAGAAGCCAATGCTGTTTGGAGATAGGTTTTATACATTTATTTGCTCTGTCTGCAGTTCTGGACCAG  1406

Query  770  AATACCTCAAACGTCTACCATTACAGTGGGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCAT  843
            |||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 1407  AATACCTCAAACGTCTACCGTTACAGTGGGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCAC  1480

Query  844  AAGAAGAAATACTTTGATTCTGAACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGG  917
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AAGAAGAAATACTTTGATTCTGAACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGG  1554

Query  918  AGAGCTGGCAGACACACCAAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT--  989
            ||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct 1555  AGAGCTGGCAGACACACCCAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCATGT  1628

Query  990  --------------------------------------------------------------------------  989
                                                                                      
Sbjct 1629  TTATGTCTGGGAAAGAAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCA  1702

Query  990  --------------------------------------------------------------------------  989
                                                                                      
Sbjct 1703  AATGTGGCTTTCAAAGCAGAGAAAGAACCAGAAGGAACATCCCATGAATTTAAAATTAAAGGCAGAAAGGCATC  1776

Query  990  ---------------------GGAAGTAAGCAATGGCATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTC  1042
                                 |||||||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 1777  CAAACCTACATCTGACTCAAGGGAAGTAAGCAATGGGATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTC  1850

Query 1043  CACCTGGCCCATATACAAGAAAAATGATTCAAAAAACTGCTGAGCCACTTTTGGATAAGGAATCAATTTCAGAG  1116
            |.|||||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||||.||||||||
Sbjct 1851  CTCCTGGCCCATATACAAGAAAAATGATTCAAAAAACTGCTGAGCTACCTTTGGATAAGGAATCAGTTTCAGAG  1924

Query 1117  AATCCTACTTTGGATTTACCTTGTTCTATAG-------------------------------GGAGAACTGAGG  1159
            ||||||||.||||||||||||||||||||||                               ||||||||||||
Sbjct 1925  AATCCTACGTTGGATTTACCTTGTTCTATAGGTTGTTATACCATTTAAATTCTTTTGTCTCAGGAGAACTGAGG  1998

Query 1160  GAACTGCACATTCATCCAATACCTCAGATGTGGATTTCACGGGTGCTTCCAGTGCAAAAGAAACTACCTCGTCT  1233
            |||.||||||||||||||||||||||||||||||..||||||||||||||||||||||.||||||||||||.||
Sbjct 1999  GAATTGCACATTCATCCAATACCTCAGATGTGGACCTCACGGGTGCTTCCAGTGCAAACGAAACTACCTCGGCT  2072

Query 1234  AGCATTTCCAGGCATTATGGATTATCTGACTCCAGAAAAAGAACGCGTACAGGAAGATCTTGGCCTGCTGCAAT  1307
            ||||||||||||||||.|||||||||.|||||.|||||||||||.||.|||||||||||.||||||||||||||
Sbjct 2073  AGCATTTCCAGGCATTGTGGATTATCAGACTCTAGAAAAAGAACTCGCACAGGAAGATCATGGCCTGCTGCAAT  2146

Query 1308  ACCACATTTGCGGAGAAGAAGAGGTCGTCTTCCAAGAAGAGCACTCCAGACTCAGAACTCAGAAATTGTAAAAG  1381
            |||||||||||||||||||||||||||.||||||.|||||||||||||||||||||||||||||.||||.||||
Sbjct 2147  ACCACATTTGCGGAGAAGAAGAGGTCGCCTTCCACGAAGAGCACTCCAGACTCAGAACTCAGAAGTTGTGAAAG  2220

Query 1382  ATGATGAAGGCAAAGAAGATTATCAGTTTGATGAACTCAACACAGAGATTCTGAATAACTTAGCAGATCAGGAG  1455
            |||||||||||||||||||||||||||||||.|||||.||||||||.|||||||||||||||||||||||||||
Sbjct 2221  ATGATGAAGGCAAAGAAGATTATCAGTTTGAAGAACTTAACACAGAAATTCTGAATAACTTAGCAGATCAGGAG  2294

Query 1456  TTACAACTCAATCATCTAAAGAACTCCATTACCAGTTATTTTGGTGCTGCAGGTAGAATAGCATGTGGCGAAAA  1529
            ||.||.||||||||.||.||.||||||||.||.||||||||||||||.||||||||||||||||||||||||||
Sbjct 2295  TTGCAGCTCAATCACCTGAAAAACTCCATCACTAGTTATTTTGGTGCCGCAGGTAGAATAGCATGTGGCGAAAA  2368

Query 1530  ATACCGAGTTTTGGCACGTCGGGTGACACTTGATGGAAAGGTGCAGTATCTTGTGGAATGGGAAGGAGCAACTG  1603
            ||||.||||||||||.|||||||||||.||||||||.||||||||||||||||||||||||||||||||.||||
Sbjct 2369  ATACAGAGTTTTGGCTCGTCGGGTGACGCTTGATGGGAAGGTGCAGTATCTTGTGGAATGGGAAGGAGCGACTG  2442

Query 1604  CATCC---------------------------------------------------------------------  1608
            |||||                                                                     
Sbjct 2443  CATCCTGACTGTAGGACTGAACGTAATGTTCACTGCACTCGTTTTCTGTTGGTACAGTTAAAAAAAAAAAAAAC  2516

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 2517  AAAAAACAGAGTGTGGGTTTTATTATCTTTCTTAGAAAAACAAACAAAGAGAAAACACAAAAATATTCACAAAA  2590

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 2591  GGAGATGATACTGGCCTTAAAACATGTTCTTGTCAATGTTATGGATATTGTCATAAAAAAAGATATCTTTTAAA  2664

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 2665  AATCAGAGGAGAGACTTAATTTTTTTAAATCTTAAGATTTGTAGACTGTTTCTAGGATAGGCTATTAAACATGA  2738

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 2739  TTCATACCCATGCATGGTGTTAGATACTTTTTATAATTATTCCATTGAGTCAATTTTTGTGATTAGTGGTTATC  2812

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 2813  AGAGCAAACAGATCATGTAGATAGCACAAGTATTTGGAGAAACATTGTGTGTTTTGTTAACAAAATGTTGGAAA  2886

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 2887  GATTTATTTCAATACCCTTTAGATTTCATAAAGTGCAGTGTATATAATGTCTACTGAAAGACTGTAAAATATTG  2960

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 2961  AAATTTCTTTCAAGCAAAATGTAAAAAAATATATTGAGCCTGTAAATTGCTCTGTGACTAGACTTCATTGTCGT  3034

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 3035  CTTAATATATTCTTTGCATGTACATGTATATACACACATGTGTATATATATGTGTGTGATTATGTGACCTATGC  3108

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 3109  AATACAAATTATGGGAATGGGCAGCTTTGGAGTATATATCCCATAATTCTTATTTCAGGAATAGTTGCAGTATT  3182

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 3183  TACACAGCAGCATTTCTTCTCAGGCGTTTATTGGGTGCTGTTGCTTGCTATGTATGAAGAGAAATGTGTCAAGT  3256

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 3257  TTAGTGTGTACTGAAGAAGGGTGTGAACAACAGTGTACATGGGCTTTTAGAGGGCTTTTCAGTCCTTGTAACTC  3330

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 3331  AGCTGTTGAATACCTAAAACAAATTCGAGTGATAACTACATTATTTCCTATTAGAAGTGACGTTTTCAAGTGAT  3404

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 3405  TGTGGCACATTATGATTGTAAATGTCTCAGTTTTAACAGCAAGTCTGTGGGAGCCCAGTGAAGACTCCTGAAAT  3478

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 3479  GTCTGTAGTAACTGTTAGTCATGTTTGAGTAAGCGTAGTATGAACAAAGTCTTTTATTGCACAGGGTTAACAAA  3552

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 3553  CAGTATGTTGCTAGCTGAGGCTAACTGCTGTTTTATTACAACATTACCTCTTGTTTTTATAAAATGTACCAAGA  3626

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 3627  TTTTAAATTGATATCTTTATTTTACGTGTTAAAAAAAAGTTTCTTTTATCACCAGTGTTAGAGTTGTCTTCTGT  3700

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 3701  TTTTTTGGTTTGTTTTGGTTTGGTTTTTTTCTTGTTGTTTTCTTTCTTAGCCAAAGAGTAAACAGAAGAATATT  3774

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 3775  ATTTTGGTAGCTCTTCATTTTACTTTTATAATGATTGGTGGATTTTAGACTAAAAATTGGGGAAATTTCTGCCA  3848

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 3849  AAATGAAAAAATATGTGACGTGTATTGATGACAGAATGCTAAAATTGTGGTTAGTGCTTATTTATTCCATTAAT  3922

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 3923  TGATTATTTGCCTGTTTTTAAAGAAACATGCTTTATTTCCTTAAGCATCTTCAAAAGATGACTTTTCTTGTCAC  3996

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 3997  ATTGTAGCCAAAAGAAGCAGAGAATTTCTTGTCCTGCTTTTGGTTCCTGGTTAACCAGGTATAATGAGCTTTAC  4070

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 4071  AAAGTGCAAATTACAAACTGTCACTTCTGTTCACCTCCACCAAAACTTGATTTCCCCTAGCTATTAATTTAAAG  4144

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 4145  TTGCCTTTCCTGCAGCTGCAATATTTTGAATAACACAGAGATTGTGTTAATTTTTGAATGTTTGTTTATATCTA  4218

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 4219  GGGGTAATGGAAAATGTAATTCCCGTGTAACCTTATTCACTCCAGCTGTATCATATTTCATTTTTCCCAAAGTT  4292

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 4293  CTTTAATTTTAACTGAACACCAGCAGTATTTTTAGTAATTCTTTAAGATACTTGGAAGACAATTTATCAAGCTG  4366

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 4367  AACTGTCTCTAGACTTAATTATTGTGAATGTCTGTTTTCTTTTATCATGGTGGTTCACATGGCTCTGATGTTCA  4440

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 4441  GTTTGTATTTTTGAAATTGCTTTACTTAGAATTAAAACAGACCAACATTAAATGTGTGTATTTTTAAAAGAGCT  4514

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 4515  AATGAGTTTTTCTTCTGTATCTGCTTGAAAATACACACTGGTGCAGCAGTTAACTGCTTTTATTTAGCTAGGGA  4588

Query 1609  --------------------------------------------------------------------------  1608
                                                                                      
Sbjct 4589  GGAGGAATTTTCCAATTCTTTTATATACTTGAATTAGTCTTGAAGAACTTTGCTTCCATTTCCTTTTGTCATAA  4662

Query 1609  --------------------------------------------------------------  1608
                                                                          
Sbjct 4663  TGATAATAGTGTATGTTCACTGTGAGTGATCTTTTAAAAAAGGATTACATGCTTTGTATTTG  4724

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.