Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_02688
- Subject:
- NR_152817.1
- Aligned Length:
- 4724
- Identities:
- 1532
- Gaps:
- 3116
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATTCGGCCCCGGAGTAGCTCCGCGCTCCCAGAATGCACCGCTAGTCCGCGGGAAACCAAAATGGCGAAGGGCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTGCGAAGTGGTCTGTGTTTGAGGCCGGTGTGAGCACGCACATTCTCCTTCCTAACCCTCGTCCCCAAGGAACT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGTGTGTGTGTGCGTGTGCGCAGGGCTCCCGCTGGGGCGGGTGCCCAGGGAGTGCCCGGACTCGCGGGGGAGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GCCCACGGGAACGAGATTGCTTCTATTTTCCTGTATGAAGCGGTTGGCACCACTTAAGTGACCGAATGAGAAAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTTTAACTGAGGAGGGAAGACCCACCCTGACTATGTGAGGCCACCATACCCATGGGCTGGGGTCCTGGATTGAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCAAATGGAGGAAGCAAGCTGAGCATGAACATTGACCTTCCTGACTGCAGATATCAGTGCGATAGCTGTCTCCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCTTCTTCTACTATGCCTCCCCCTTCCATGATGGACTGTACTCTGAAACTCTGCCGAGTGTTTCATCATGGACT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AGAGTAGTGGCAAGGGTACTGGAAACGTGATTGTGGTGGAGGTGTCATGGCTGATTGCTGTTACCAGAGAAGAG 592
Query 1 -----------------------------AT----------------GAGAGACTCTACAGGGGCAGGTAATTC 29
|| |||||||||||||||.|||||||||||
Sbjct 593 GAGGGAAATTGGAGCGGCACAATAGAGGGATGAAAGTTCCTACTAGGGAGAGACTCTACAGGAGCAGGTAATTC 666
Query 30 ACTGGTCCACAAGCGGTCTCCTTTACGTCGAAACCAAAAGACCCCAACATCCTTGACCAAGCTGTCTTTACAGG 103
|||||||||||||||||||||||||||||||||||||||||||.||.|||||||||.|||||||||||||||||
Sbjct 667 ACTGGTCCACAAGCGGTCTCCTTTACGTCGAAACCAAAAGACCTCAGCATCCTTGAACAAGCTGTCTTTACAGG 740
Query 104 ATGGACATAAAGCCAAAAAGCCAGCATGTAAATTTGAAGAGGGTCAGGATGTCCTAGCTAGATGGTCAGATGGC 177
|||||||||||||||||||.||||||||||||||||||||||||||.||||||.||||||||||||||||||||
Sbjct 741 ATGGACATAAAGCCAAAAAACCAGCATGTAAATTTGAAGAGGGTCAAGATGTCTTAGCTAGATGGTCAGATGGC 814
Query 178 TTGTTTTATCTTGGCACTATCAAAAAGATAAACATATTGAAACAGAGCTGCTTCATCATATTTGAAGACAGTTC 251
||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 815 TTGTTTTATCTTGGAACTATCAAAAAGATAAACATATTGAAACAGAGCTGCTTCATCATATTTGAGGACAGTTC 888
Query 252 TAAATCCTGGGTTCTCTGGAAGGACATTCAAACAGGAGCCACTGGAAGTGGGGAAATGGTCTGTACAATATGTC 325
.||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||
Sbjct 889 CAAATCCTGGGTTCTCTGGAAGGACATCCAAACAGGAGCCACTGGGAGTGGGGAAATGGTCTGTACAATATGTC 962
Query 326 AAGAAGAGTATTCAGAAGCTCCCAATGAAATGGTTATATGTGACAAGTGTGGCCAAGGATATCATCAGTTGTGT 399
|||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||||||||||||.|||||
Sbjct 963 AAGAAGAGTATTCAGAAGCTCCCAATGAAATGGTTATATGTGATAAGTGTGGTCAAGGATATCATCAGCTGTGT 1036
Query 400 CACACACCTCATATTGATTCCAGTGTGATTGATTCAGATGAAAAATGGCTCTGTCGGCAGTGTGTTTTTGCAAC 473
|||||||||||||||||.||.|||||||||||||||||||||||.|||||.|||||.|||||.|||||||||||
Sbjct 1037 CACACACCTCATATTGACTCGAGTGTGATTGATTCAGATGAAAAGTGGCTTTGTCGACAGTGCGTTTTTGCAAC 1110
Query 474 AACAACAAAGAGGGGTGGTGCACTTAAGAAAGGACCAAATGCCAAAGCATTGCAAGTCATGAAGCAGACATTAC 547
|||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AACTACAAAGAGGGGTGGTGCGCTTAAGAAAGGACCAAATGCCAAAGCATTGCAAGTCATGAAGCAGACATTAC 1184
Query 548 CCTATAGTGTGGCAGACCTTGAATGGGATGCAGGTCATAAAACCAATGTCCAGCAGTGTTACTGCTATTGTGGA 621
|||||||||||||.||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||
Sbjct 1185 CCTATAGTGTGGCTGACCTTGAATGGGATGCAGGCCATAAAACCAATGTCCAGCAGTGCTACTGCTATTGTGGA 1258
Query 622 GGCCCTGGAGACTGGTATTTGAAGATGCTACAGTGCTGCAAATGTAAGCAGTGGTTTCATGAGGCTTGTGTGCA 695
||||||||||||||||||||.||||||||.||||||||||||||||||||||||||||||||.||||||||.||
Sbjct 1259 GGCCCTGGAGACTGGTATTTAAAGATGCTGCAGTGCTGCAAATGTAAGCAGTGGTTTCATGAAGCTTGTGTCCA 1332
Query 696 ATGCCTTCAAAAGCCAATGCTATTTGGAGACAGATTTTATACGTTTATATGCTCTGTCTGCAGTTCTGGACCAG 769
|||||||||.|||||||||||.||||||||.||.||||||||.|||||.|||||||||||||||||||||||||
Sbjct 1333 ATGCCTTCAGAAGCCAATGCTGTTTGGAGATAGGTTTTATACATTTATTTGCTCTGTCTGCAGTTCTGGACCAG 1406
Query 770 AATACCTCAAACGTCTACCATTACAGTGGGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCAT 843
|||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 1407 AATACCTCAAACGTCTACCGTTACAGTGGGTAGATATAGCACACCTATGCCTTTACAACCTAAGTGTTATTCAC 1480
Query 844 AAGAAGAAATACTTTGATTCTGAACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGG 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AAGAAGAAATACTTTGATTCTGAACTTGAGCTTATGACATACATTAATGAAAACTGGGATAGATTGCACCCTGG 1554
Query 918 AGAGCTGGCAGACACACCAAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCAT-- 989
||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 AGAGCTGGCAGACACACCCAAATCTGAAAGATATGAGCATGTTCTGGAGGCATTAAATGATTACAAGACCATGT 1628
Query 990 -------------------------------------------------------------------------- 989
Sbjct 1629 TTATGTCTGGGAAAGAAATAAAGAAGAAGAAGCATTTGTTTGGGTTGCGAATTCGTGTTCCTCCTGTGCCACCA 1702
Query 990 -------------------------------------------------------------------------- 989
Sbjct 1703 AATGTGGCTTTCAAAGCAGAGAAAGAACCAGAAGGAACATCCCATGAATTTAAAATTAAAGGCAGAAAGGCATC 1776
Query 990 ---------------------GGAAGTAAGCAATGGCATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTC 1042
|||||||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 1777 CAAACCTACATCTGACTCAAGGGAAGTAAGCAATGGGATAGAAAAAAAAGGAAAGAAAAAATCTGTAGGTCGTC 1850
Query 1043 CACCTGGCCCATATACAAGAAAAATGATTCAAAAAACTGCTGAGCCACTTTTGGATAAGGAATCAATTTCAGAG 1116
|.|||||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||||.||||||||
Sbjct 1851 CTCCTGGCCCATATACAAGAAAAATGATTCAAAAAACTGCTGAGCTACCTTTGGATAAGGAATCAGTTTCAGAG 1924
Query 1117 AATCCTACTTTGGATTTACCTTGTTCTATAG-------------------------------GGAGAACTGAGG 1159
||||||||.|||||||||||||||||||||| ||||||||||||
Sbjct 1925 AATCCTACGTTGGATTTACCTTGTTCTATAGGTTGTTATACCATTTAAATTCTTTTGTCTCAGGAGAACTGAGG 1998
Query 1160 GAACTGCACATTCATCCAATACCTCAGATGTGGATTTCACGGGTGCTTCCAGTGCAAAAGAAACTACCTCGTCT 1233
|||.||||||||||||||||||||||||||||||..||||||||||||||||||||||.||||||||||||.||
Sbjct 1999 GAATTGCACATTCATCCAATACCTCAGATGTGGACCTCACGGGTGCTTCCAGTGCAAACGAAACTACCTCGGCT 2072
Query 1234 AGCATTTCCAGGCATTATGGATTATCTGACTCCAGAAAAAGAACGCGTACAGGAAGATCTTGGCCTGCTGCAAT 1307
||||||||||||||||.|||||||||.|||||.|||||||||||.||.|||||||||||.||||||||||||||
Sbjct 2073 AGCATTTCCAGGCATTGTGGATTATCAGACTCTAGAAAAAGAACTCGCACAGGAAGATCATGGCCTGCTGCAAT 2146
Query 1308 ACCACATTTGCGGAGAAGAAGAGGTCGTCTTCCAAGAAGAGCACTCCAGACTCAGAACTCAGAAATTGTAAAAG 1381
|||||||||||||||||||||||||||.||||||.|||||||||||||||||||||||||||||.||||.||||
Sbjct 2147 ACCACATTTGCGGAGAAGAAGAGGTCGCCTTCCACGAAGAGCACTCCAGACTCAGAACTCAGAAGTTGTGAAAG 2220
Query 1382 ATGATGAAGGCAAAGAAGATTATCAGTTTGATGAACTCAACACAGAGATTCTGAATAACTTAGCAGATCAGGAG 1455
|||||||||||||||||||||||||||||||.|||||.||||||||.|||||||||||||||||||||||||||
Sbjct 2221 ATGATGAAGGCAAAGAAGATTATCAGTTTGAAGAACTTAACACAGAAATTCTGAATAACTTAGCAGATCAGGAG 2294
Query 1456 TTACAACTCAATCATCTAAAGAACTCCATTACCAGTTATTTTGGTGCTGCAGGTAGAATAGCATGTGGCGAAAA 1529
||.||.||||||||.||.||.||||||||.||.||||||||||||||.||||||||||||||||||||||||||
Sbjct 2295 TTGCAGCTCAATCACCTGAAAAACTCCATCACTAGTTATTTTGGTGCCGCAGGTAGAATAGCATGTGGCGAAAA 2368
Query 1530 ATACCGAGTTTTGGCACGTCGGGTGACACTTGATGGAAAGGTGCAGTATCTTGTGGAATGGGAAGGAGCAACTG 1603
||||.||||||||||.|||||||||||.||||||||.||||||||||||||||||||||||||||||||.||||
Sbjct 2369 ATACAGAGTTTTGGCTCGTCGGGTGACGCTTGATGGGAAGGTGCAGTATCTTGTGGAATGGGAAGGAGCGACTG 2442
Query 1604 CATCC--------------------------------------------------------------------- 1608
|||||
Sbjct 2443 CATCCTGACTGTAGGACTGAACGTAATGTTCACTGCACTCGTTTTCTGTTGGTACAGTTAAAAAAAAAAAAAAC 2516
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 2517 AAAAAACAGAGTGTGGGTTTTATTATCTTTCTTAGAAAAACAAACAAAGAGAAAACACAAAAATATTCACAAAA 2590
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 2591 GGAGATGATACTGGCCTTAAAACATGTTCTTGTCAATGTTATGGATATTGTCATAAAAAAAGATATCTTTTAAA 2664
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 2665 AATCAGAGGAGAGACTTAATTTTTTTAAATCTTAAGATTTGTAGACTGTTTCTAGGATAGGCTATTAAACATGA 2738
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 2739 TTCATACCCATGCATGGTGTTAGATACTTTTTATAATTATTCCATTGAGTCAATTTTTGTGATTAGTGGTTATC 2812
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 2813 AGAGCAAACAGATCATGTAGATAGCACAAGTATTTGGAGAAACATTGTGTGTTTTGTTAACAAAATGTTGGAAA 2886
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 2887 GATTTATTTCAATACCCTTTAGATTTCATAAAGTGCAGTGTATATAATGTCTACTGAAAGACTGTAAAATATTG 2960
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 2961 AAATTTCTTTCAAGCAAAATGTAAAAAAATATATTGAGCCTGTAAATTGCTCTGTGACTAGACTTCATTGTCGT 3034
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 3035 CTTAATATATTCTTTGCATGTACATGTATATACACACATGTGTATATATATGTGTGTGATTATGTGACCTATGC 3108
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 3109 AATACAAATTATGGGAATGGGCAGCTTTGGAGTATATATCCCATAATTCTTATTTCAGGAATAGTTGCAGTATT 3182
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 3183 TACACAGCAGCATTTCTTCTCAGGCGTTTATTGGGTGCTGTTGCTTGCTATGTATGAAGAGAAATGTGTCAAGT 3256
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 3257 TTAGTGTGTACTGAAGAAGGGTGTGAACAACAGTGTACATGGGCTTTTAGAGGGCTTTTCAGTCCTTGTAACTC 3330
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 3331 AGCTGTTGAATACCTAAAACAAATTCGAGTGATAACTACATTATTTCCTATTAGAAGTGACGTTTTCAAGTGAT 3404
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 3405 TGTGGCACATTATGATTGTAAATGTCTCAGTTTTAACAGCAAGTCTGTGGGAGCCCAGTGAAGACTCCTGAAAT 3478
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 3479 GTCTGTAGTAACTGTTAGTCATGTTTGAGTAAGCGTAGTATGAACAAAGTCTTTTATTGCACAGGGTTAACAAA 3552
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 3553 CAGTATGTTGCTAGCTGAGGCTAACTGCTGTTTTATTACAACATTACCTCTTGTTTTTATAAAATGTACCAAGA 3626
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 3627 TTTTAAATTGATATCTTTATTTTACGTGTTAAAAAAAAGTTTCTTTTATCACCAGTGTTAGAGTTGTCTTCTGT 3700
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 3701 TTTTTTGGTTTGTTTTGGTTTGGTTTTTTTCTTGTTGTTTTCTTTCTTAGCCAAAGAGTAAACAGAAGAATATT 3774
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 3775 ATTTTGGTAGCTCTTCATTTTACTTTTATAATGATTGGTGGATTTTAGACTAAAAATTGGGGAAATTTCTGCCA 3848
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 3849 AAATGAAAAAATATGTGACGTGTATTGATGACAGAATGCTAAAATTGTGGTTAGTGCTTATTTATTCCATTAAT 3922
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 3923 TGATTATTTGCCTGTTTTTAAAGAAACATGCTTTATTTCCTTAAGCATCTTCAAAAGATGACTTTTCTTGTCAC 3996
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 3997 ATTGTAGCCAAAAGAAGCAGAGAATTTCTTGTCCTGCTTTTGGTTCCTGGTTAACCAGGTATAATGAGCTTTAC 4070
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 4071 AAAGTGCAAATTACAAACTGTCACTTCTGTTCACCTCCACCAAAACTTGATTTCCCCTAGCTATTAATTTAAAG 4144
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 4145 TTGCCTTTCCTGCAGCTGCAATATTTTGAATAACACAGAGATTGTGTTAATTTTTGAATGTTTGTTTATATCTA 4218
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 4219 GGGGTAATGGAAAATGTAATTCCCGTGTAACCTTATTCACTCCAGCTGTATCATATTTCATTTTTCCCAAAGTT 4292
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 4293 CTTTAATTTTAACTGAACACCAGCAGTATTTTTAGTAATTCTTTAAGATACTTGGAAGACAATTTATCAAGCTG 4366
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 4367 AACTGTCTCTAGACTTAATTATTGTGAATGTCTGTTTTCTTTTATCATGGTGGTTCACATGGCTCTGATGTTCA 4440
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 4441 GTTTGTATTTTTGAAATTGCTTTACTTAGAATTAAAACAGACCAACATTAAATGTGTGTATTTTTAAAAGAGCT 4514
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 4515 AATGAGTTTTTCTTCTGTATCTGCTTGAAAATACACACTGGTGCAGCAGTTAACTGCTTTTATTTAGCTAGGGA 4588
Query 1609 -------------------------------------------------------------------------- 1608
Sbjct 4589 GGAGGAATTTTCCAATTCTTTTATATACTTGAATTAGTCTTGAAGAACTTTGCTTCCATTTCCTTTTGTCATAA 4662
Query 1609 -------------------------------------------------------------- 1608
Sbjct 4663 TGATAATAGTGTATGTTCACTGTGAGTGATCTTTTAAAAAAGGATTACATGCTTTGTATTTG 4724
