Nucleotide Global Alignment

Description

Query:
ccsbBroad304_02765
Subject:
NM_001252127.2
Aligned Length:
3411
Identities:
3186
Gaps:
225

Alignment

Query    1  ATGAGCGACATAGTGGAGAAGACGCTGACGGCGCTGCCGGGACTCTTTCTGCAGAACCAGCCCGGTGGTGGGCC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CGCGGCCGCCAAGGCGTCCTTCTCCTCGAGGCTGGGCAGCCTTGTCCGCGGCATCACAGCCCTCACCTCCAAGC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  ACGAAGAAGAAAAATTAATCCAGCAGGAACTGAGTAGTCTGAAAGCGACTGTTTCTGCTCCTACTACAACACTG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AAAATGATGAAGGAATGTATGGTGAGACTTATATATTGTGAAATGCTTGGATATGATGCTTCCTTTGGCTATAT  296
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ---ATGATGAAGGAATGTATGGTGAGACTTATATATTGTGAAATGCTTGGATATGATGCTTCCTTTGGCTATAT  71

Query  297  TCATGCAATCAAGTTAGCCCAACAAGGAAACCTCTTAGAAAAAAGAGTAGGTTATTTGGCTGTTTCCTTATTTC  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   72  TCATGCAATCAAGTTAGCCCAACAAGGAAACCTCTTAGAAAAAAGAGTAGGTTATTTGGCTGTTTCCTTATTTC  145

Query  371  TACATGAAAGTCATGAATTATTGCTTCTCCTTGTGAATACAGTTGTAAAGGATCTGCAGAGCACTAACCTAGTA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  146  TACATGAAAGTCATGAATTATTGCTTCTCCTTGTGAATACAGTTGTAAAGGATCTGCAGAGCACTAACCTAGTA  219

Query  445  GAAGTGTGTATGGCACTGACTGTTGTTAGCCAGATTTTCCCCTGCGAAATGATTCCAGCTGTTCTTCCATTAAT  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  220  GAAGTGTGTATGGCACTGACTGTTGTTAGCCAGATTTTCCCCTGCGAAATGATTCCAGCTGTTCTTCCATTAAT  293

Query  519  AGAAGATAAACTTCAACATTCTAAGGAGATTGTACGAAGAAAAGCTGTTCTGGCATTATACAAATTCCATCTCA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  294  AGAAGATAAACTTCAACATTCTAAGGAGATTGTACGAAGAAAAGCTGTTCTGGCATTATACAAATTCCATCTCA  367

Query  593  TTGCTCCTAATCAAGTACAACATATTCATATTAAGTTTCGGAAAGCACTTTGTGACAGAGATGTTGGGGTCATG  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  368  TTGCTCCTAATCAAGTACAACATATTCATATTAAGTTTCGGAAAGCACTTTGTGACAGAGATGTTGGGGTCATG  441

Query  667  GCTGCCTCCTTGCATATATATCTTAGAATGATTAAGGAGAATTCATCTGGATATAAAGACTTGACTGGGAGTTT  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  442  GCTGCCTCCTTGCATATATATCTTAGAATGATTAAGGAGAATTCATCTGGATATAAAGACTTGACTGGGAGTTT  515

Query  741  TGTAACCATTTTGAAGCAAGTAGTTGGAGGAAAGCTCCCAGTAGAATTCAATTACCACAGTGTGCCAGCACCAT  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  516  TGTAACCATTTTGAAGCAAGTAGTTGGAGGAAAGCTCCCAGTAGAATTCAATTACCACAGTGTGCCAGCACCAT  589

Query  815  GGTTACAAATTCAGCTCTTGAGAATACTGGGACTTCTAGGAAAAGATGATCAAAGGACAAGTGAATTAATGTAT  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  590  GGTTACAAATTCAGCTCTTGAGAATACTGGGACTTCTAGGAAAAGATGATCAAAGGACAAGTGAATTAATGTAT  663

Query  889  GATGTTCTTGATGAATCCTTACGAAGAGCTGAGTTAAATCACAATGTCACATATGCTATTTTGTTTGAATGTGT  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  664  GATGTTCTTGATGAATCCTTACGAAGAGCTGAGTTAAATCACAATGTCACATATGCTATTTTGTTTGAATGTGT  737

Query  963  GCATACAGTCTATTCTATTTATCCTAAATCGGAATTACTTGAGAAGGCTGCCAAGTGCATTGGAAAATTTGTTC  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  738  GCATACAGTCTATTCTATTTATCCTAAATCGGAATTACTTGAGAAGGCTGCCAAGTGCATTGGAAAATTTGTTC  811

Query 1037  TGTCACCTAAAATAAATCTAAAATATTTAGGACTGAAGGCTCTTACCTATGTTATCCAACAGGATCCTACTCTG  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  812  TGTCACCTAAAATAAATCTAAAATATTTAGGACTGAAGGCTCTTACCTATGTTATCCAACAGGATCCTACTCTG  885

Query 1111  GCTCTTCAACACCAGATGACAATAATTGAATGTTTAGATCATCCTGATCCCATTATTAAAAGAGAGACTCTGGA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  886  GCTCTTCAACACCAGATGACAATAATTGAATGTTTAGATCATCCTGATCCCATTATTAAAAGAGAGACTCTGGA  959

Query 1185  ACTTCTTTACAGAATTACTAATGCACAGAATATAACAGTTATTGTCCAGAAAATGCTTGAATATTTACATCAGA  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  960  ACTTCTTTACAGAATTACTAATGCACAGAATATAACAGTTATTGTCCAGAAAATGCTTGAATATTTACATCAGA  1033

Query 1259  GCAAAGAAGAGTATGTCATCGTCAATTTGGTCGGCAAAATAGCAGAGCTGGCTGAGAAATATGCTCCTGATAAT  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034  GCAAAGAAGAGTATGTCATCGTCAATTTGGTCGGCAAAATAGCAGAGCTGGCTGAGAAATATGCTCCTGATAAT  1107

Query 1333  GCATGGTTTATTCAGACAATGAATGCTGTGTTTTCAGTAGGAGGAGATGTAATGCATCCTGATATTCCCAATAA  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108  GCATGGTTTATTCAGACAATGAATGCTGTGTTTTCAGTAGGAGGAGATGTAATGCATCCTGATATTCCCAATAA  1181

Query 1407  CTTTCTGAGACTACTAGCGGAAGGTTTTGATGATGAAACAGAAGATCAGCAATTAAGACTCTATGCAGTTCAGT  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1182  CTTTCTGAGACTACTAGCGGAAGGTTTTGATGATGAAACAGAAGATCAGCAATTAAGACTCTATGCAGTTCAGT  1255

Query 1481  CTTATCTCACTTTACTGGATATGGAAAATGTGTTCTATCCACAGAGATTTCTTCAAGTTATGAGTTGGGTATTA  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256  CTTATCTCACTTTACTGGATATGGAAAATGTGTTCTATCCACAGAGATTTCTTCAAGTTATGAGTTGGGTATTA  1329

Query 1555  GGGGAATATTCCTACCTCTTAGATAAGGAAACGCCAGAGGAAGTTATAGCTAAGCTCTACAAGTTACTTATGAA  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330  GGGGAATATTCCTACCTCTTAGATAAGGAAACGCCAGAGGAAGTTATAGCTAAGCTCTACAAGTTACTTATGAA  1403

Query 1629  TGACTCTGTGTCTTCAGAAACAAAAGCCTGGTTAATTGCTGCTGTGACCAAATTGACATCTCAGGCGCACTCTT  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404  TGACTCTGTGTCTTCAGAAACAAAAGCCTGGTTAATTGCTGCTGTGACCAAATTGACATCTCAGGCGCACTCTT  1477

Query 1703  CTAATACAGTTGAGAGATTAATCCATGAATTTACCATATCTTTGGATACTTGTATGAGACAACATGCATTTGAA  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478  CTAATACAGTTGAGAGATTAATCCATGAATTTACCATATCTTTGGATACTTGTATGAGACAACATGCATTTGAA  1551

Query 1777  TTAAAACATTTGCATGAGAATGTGGAACTTATGAAGAGCTTGCTTCCAGTTGACAGGAGTTGTGAAGACTTGGT  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552  TTAAAACATTTGCATGAGAATGTGGAACTTATGAAGAGCTTGCTTCCAGTTGACAGGAGTTGTGAAGACTTGGT  1625

Query 1851  GGTAGATGCTTCTTTATCTTTTCTGGATGGTTTTGTGGCTGAAGGACTCAGTCAGGGTGCAGCGCCTTACAAAC  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1626  GGTAGATGCTTCTTTATCTTTTCTGGATGGTTTTGTGGCTGAAGGACTCAGTCAGGGTGCAGCGCCTTACAAAC  1699

Query 1925  CTCCCCATCAACGCCAGGAGGAAAAGCTTTCTCAGGAAAAAGTTCTCAATTTTGAACCATATGGACTCTCCTTT  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1700  CTCCCCATCAACGCCAGGAGGAAAAGCTTTCTCAGGAAAAAGTTCTCAATTTTGAACCATATGGACTCTCCTTT  1773

Query 1999  TCTTCATCTGGCTTCACTGGACGACAGTCTCCTGCTGGCATTTCTCTTGGTTCAGATGTATCTGGGAATAGTGC  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774  TCTTCATCTGGCTTCACTGGACGACAGTCTCCTGCTGGCATTTCTCTTGGTTCAGATGTATCTGGGAATAGTGC  1847

Query 2073  TGAGACAGGACTGAAAGAGACAAATAGCTTGAAGCTGGAAGGTATAAAGAAATTGTGGGGGAAAGAAGGCTATC  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1848  TGAGACAGGACTGAAAGAGACAAATAGCTTGAAGCTGGAAGGTATAAAGAAATTGTGGGGGAAAGAAGGCTATC  1921

Query 2147  TTCCCAAGAAGGAAAGCAAAACTGGTGATGAAAGTGGAGCTCTGCCTGTTCCTCAAGAGAGTATAATGGAGAAT  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1922  TTCCCAAGAAGGAAAGCAAAACTGGTGATGAAAGTGGAGCTCTGCCTGTTCCTCAAGAGAGTATAATGGAGAAT  1995

Query 2221  GTAGATCAAGCTATAACTAAAAAGGATCAATCTCAAGTTCTTACCCAATCTAAAGAGGAGAAAGAAAAGCAGCT  2294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1996  GTAGATCAAGCTATAACTAAAAAGGATCAATCTCAAGTTCTTACCCAATCTAAAGAGGAGAAAGAAAAGCAGCT  2069

Query 2295  GCTGGCATCATCATTATTTGTTGGTCTAGGATCAGAAAGTACAATCAACCTGCTGGGAAAAGCAGATACTGTCT  2368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2070  GCTGGCATCATCATTATTTGTTGGTCTAGGATCAGAAAGTACAATCAACCTGCTGGGAAAAGCAGATACTGTCT  2143

Query 2369  CTCACAAGTTCAGAAGGAAATCAAAAGTCAAAGAAGCTAAAAGTGGCGAAACAACCAGTACTCATAATATGACC  2442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2144  CTCACAAGTTCAGAAGGAAATCAAAAGTCAAAGAAGCTAAAAGTGGCGAAACAACCAGTACTCATAATATGACC  2217

Query 2443  TGTTCTTCCTTTAGTTCTTTGTCAAATGTGGCATATGAAGATGATTATTATTCGAATACTTTGCACGATACAGG  2516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2218  TGTTCTTCCTTTAGTTCTTTGTCAAATGTGGCATATGAAGATGATTATTATTCGAATACTTTGCACGATACAGG  2291

Query 2517  AGACAAGGAATTAAAGAAATTTTCTCTCACTTCAGAACTTTTGGATTCTGAGTCACTCACAGAACTGCCCTTGG  2590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2292  AGACAAGGAATTAAAGAAATTTTCTCTCACTTCAGAACTTTTGGATTCTGAGTCACTCACAGAACTGCCCTTGG  2365

Query 2591  TTGAGAAATTCTCATATTGTAGTCTGTCTACACCTTCATTGTTTGCTAATAACAACATGGAAATTTTTCACCCT  2664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2366  TTGAGAAATTCTCATATTGTAGTCTGTCTACACCTTCATTGTTTGCTAATAACAACATGGAAATTTTTCACCCT  2439

Query 2665  CCTCAATCTACTGCAGCCTCAGTTGCCAAGGAAAGCTCTTTAGCTTCATCTTTTTTGGAAGAAACTACTGAATA  2738
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2440  CCTCAATCTACTGCAGCCTCAGTTGCCAAGGAAAGCTCTTTAGCTTCATCTTTTTTGGAAGAAACTACTGAATA  2513

Query 2739  CATACACTCAAATGCTATGGAAGTCTGTAATAATGAAACTATATCAGTGTCTTCTTATAAAATTTGGAAAGATG  2812
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2514  CATACACTCAAATGCTATGGAAGTCTGTAATAATGAAACTATATCAGTGTCTTCTTATAAAATTTGGAAAGATG  2587

Query 2813  ATTGTTTATTGATGGTCTGGTCAGTCACTAATAAGAGTGGTTTGGAATTGAAAAGTGCTGACTTAGAAATTTTT  2886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2588  ATTGTTTATTGATGGTCTGGTCAGTCACTAATAAGAGTGGTTTGGAATTGAAAAGTGCTGACTTAGAAATTTTT  2661

Query 2887  CCTGCAGAAAATTTCAAGGTGACTGAGCAACCTGGATGCTGTTTGCCTGTAATGGAAGCAGAAAGCACCAAAAG  2960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2662  CCTGCAGAAAATTTCAAGGTGACTGAGCAACCTGGATGCTGTTTGCCTGTAATGGAAGCAGAAAGCACCAAAAG  2735

Query 2961  CTTTCAATATAGTGTGCAGATAGAAAAACCTTTTACAGAAGGAAATCTTACTGGTTTTATTAGTTATCATATGA  3034
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2736  CTTTCAATATAGTGTGCAGATAGAAAAACCTTTTACAGAAGGAAATCTTACTGGTTTTATTAGTTATCATATGA  2809

Query 3035  TGGATACTCATTCTGCTCAGCTGGAATTTTCTGTAAACTTATCACTATTAGATTTCATTAGACCATTAAAAATC  3108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2810  TGGATACTCATTCTGCTCAGCTGGAATTTTCTGTAAACTTATCACTATTAGATTTCATTAGACCATTAAAAATC  2883

Query 3109  TCAAGTGACGACTTTGGGAAACTCTGGTTATCCTTCGCAAATGATGTGAAACAAAATGTAAAAATGTCAGAATC  3182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2884  TCAAGTGACGACTTTGGGAAACTCTGGTTATCCTTCGCAAATGATGTGAAACAAAATGTAAAAATGTCAGAATC  2957

Query 3183  TCAAGCTGCACTTCCTTCTGCACTAAAGACTCTGCAACAGAAACTAAGACTCCATATTATTGAGATTATAGGCA  3256
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2958  TCAAGCTGCACTTCCTTCTGCACTAAAGACTCTGCAACAGAAACTAAGACTCCATATTATTGAGATTATAGGCA  3031

Query 3257  ATGAAGGGCTATTGGCCTGTCAGCTGCTCCCATCCATCCCCTGCTTACTGCATTGCCGAGTTCATGCAGATGTA  3330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3032  ATGAAGGGCTATTGGCCTGTCAGCTGCTCCCATCCATCCCCTGCTTACTGCATTGCCGAGTTCATGCAGATGTA  3105

Query 3331  TTAGCCCTGTGGTTCAGATCCTCCTGTTCTACTCTTCCTGACTATTTACTGTATCAGTGTCAAAAGGTGATGGA  3404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3106  TTAGCCCTGTGGTTCAGATCCTCCTGTTCTACTCTTCCTGACTATTTACTGTATCAGTGTCAAAAGGTGATGGA  3179

Query 3405  GGGATCC  3411
            |||||||
Sbjct 3180  GGGATCC  3186

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