Nucleotide Global Alignment

Description

• Query: ccsbBroad304_03028
• Subject: NM_001164803.2
• Aligned Length: 1175
• Identities: 576
• Gaps: 589

Alignment

Query    1  ATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATACGGAAACAAATGAGAAAGCTCTTGA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGTTGAAGCAGATCGCCCAGGAAAGCTCTTCATTGGTGGGCTTAATACGGAAACAAATGAGAAAGCTCTTGA  74

Query   75  AGCAGTATTTGGCAAATATGGACGAATAGTGGAAGTACTCTTGATGAAAGACCGTGAAACCAACAAATCAAGAG  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  AGCAGTATTTGGCAAATATGGACGAATAGTGGAAGTACTCTTGATGAAAGACCGTGAAACCAACAAATCAAGAG  148

Query  149  GATTTGCTTTTGTCACCTTTGAAAGCCCAGCAGACGCTAAGGATGCAGCCAGAGACATGAATGGAAAGTCATTA  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct  149  GATTTGCTTTTGTCACCTTTGAAAGCCCAGCAGACGCTAAGGATGCAGCCAGAGACATGAATGGAA--------  214

Query  223  GATGGAAAAGCCATCAAGGTGGAACAAGCCACCAAACCATCATTTGAAAGTGGTAGACGTGGACCGCCTCCACC  296
                                                                                      
Sbjct  215  --------------------------------------------------------------------------  214

Query  297  TCCAAGAAGTAGAGGCCCTCCAAGAGGTCTTAGAGGTGGAAGAGGAGGAAGTGGAGGAACCAGGGGACCTCCCT  370
                                                                                      
Sbjct  215  --------------------------------------------------------------------------  214

Query  371  CACGGGGAGGACACATGGATGACGGTGGATATTCCATGAATTTTAACATGAGTTCTTCCAGGGGACCACTCCCA  444
                                                                                      
Sbjct  215  --------------------------------------------------------------------------  214

Query  445  GTAAAAAGAGGACCACCACCAAGAAGTGGGGGTCCTCCTCCTAAGAGATCTGCACCTTCAGGACCAGTTCGCAG  518
                                                                                      
Sbjct  215  --------------------------------------------------------------------------  214

Query  519  TAGCAGTGGAATGGGAGGAAGAGCTCCTGTATCACGTGGAAGAGATAGTTATGGAGGTCCACCTCGAAGGGAAC  592
                                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  215  ---------------------AGCTCCTGTATCACGTGGAAGAGATAGTTATGGAGGTCCACCTCGAAGGGAAC  267

Query  593  CGCTGCCCTCTCGTAGAGATGTTTATTTGTCCCCAAGAGATGATGGGTATTCTACTAAAGACAGCTATTCAAGC  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  268  CGCTGCCCTCTCGTAGAGATGTTTATTTGTCCCCAAGAGATGATGGGTATTCTACTAAAGACAGCTATTCAAGC  341

Query  667  AGAGATTACCCAAGTTCTCGTGATACTAGAGATTATGCACCACCACCACGAGATTATACTTACCGTGATTATGG  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  342  AGAGATTACCCAAGTTCTCGTGATACTAGAGATTATGCACCACCACCACGAGATTATACTTACCGTGATTATGG  415

Query  741  TCATTCCAGTTCACGTGATGACTATCCATCAAGAGGATATAGCGATAGAGATGGATATGGTCGTGATCGTGACT  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  416  TCATTCCAGTTCACGTGATGACTATCCATCAAGAGGATATAGCGATAGAGATGGATATGGTCGTGATCGTGACT  489

Query  815  ATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATGGTAACTCACGTAGTGCTCCACCT  888
            |||||||||||||||||||||||||||||||||||||||||||||||||||||...|.|  |..|||||     
Sbjct  490  ATTCAGATCATCCAAGTGGAGGTTCCTACAGAGATTCATATGAGAGTTATGGTTGGTGA--TTTTGCTC-----  556

Query  889  ACACGAGGGCCCCCGCCATCTTATGGTGGAAGCAGTCGCTATGA-TGATT-ACAGCAGCTCACGTGACGGATAT  960
                               .|||||||.| .|.||| ||  ||| ||||| ||||                   
Sbjct  557  -------------------ATTATGGTCG-TGGAGT-GC--TGATTGATTCACAG-------------------  588

Query  961  GGTGGAAGTCGAGACAGTTACTCAAGCAGCCGAAGTGATCTCTACTCAAGTGGTCGTGATCGGGTTGGCAGACA  1034
                                                                                      
Sbjct  589  --------------------------------------------------------------------------  588

Query 1035  AGAAAGAGGGCTTCCCCCTTCTATGGAAAGGGGGTACCCTCCTCCACGTGATTCCTACAGCAGTTCAAGCCGCG  1108
                                                                                      
Sbjct  589  --------------------------------------------------------------------------  588

Query 1109  GAGCACCAAGAGGTGGTGGCCGTGGAGGAAGCCGATCTGATAGAGGGGGAGGCAGAAGCAGATAC  1173
                                                                             
Sbjct  589  -----------------------------------------------------------------  588