Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03189
- Subject:
- XR_001740166.2
- Aligned Length:
- 3033
- Identities:
- 1396
- Gaps:
- 1637
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTCGCTCGCGAGATCTTCTCTGTGGCGGAGACAGCCAGGTTGGCAGCTGACGGGACAGCCGGGGTCTATTTTG 74
Query 1 ---------------------------------------------------------------ATGGAGTATAT 11
|||||||||||
Sbjct 75 TTGCGGGTTTTCAGCAAATCCAGGGCTGGTCTGGAGGCGCGAAAACTTAAGGCATACAGAACGATGGAGTATAT 148
Query 12 GGCAGAATCCACCGACCGCAGCCCTGGACACATCTTGTGCTGTGAGTGTGGTGTTCCGATAAGTCCAAATCCTG 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GGCAGAATCCACCGACCGCAGCCCTGGACACATCTTGTGCTGTGAGTGTGGTGTTCCGATAAGTCCAAATCCTG 222
Query 86 CCAATATTTGTGTGGCCTGTTTGCGAAGTAAAGTGGACATCAGCCAAGGTATTCCGAAACAAGTCTCGATTTCG 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCAATATTTGTGTGGCCTGTTTGCGAAGTAAAGTGGACATCAGCCAAGGTATTCCGAAACAAGTCTCGATTTCG 296
Query 160 TTCTGCAAACAATGTCAAAGGTATTTTCAACCACCAGGAACTTGGATACAGTGTGCTTTAGAATCCAGGGAACT 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTCTGCAAACAATGTCAAAGGTATTTTCAACCACCAGGAACTTGGATACAGTGTGCTTTAGAATCCAGGGAACT 370
Query 234 TCTTGCTTTGTGCTTGAAAAAAATCAAAGCCCCTCTGAGTAAGGTACGGCTTGTAGATGCAGGCTTTGTTTGGA 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCTTGCTTTGTGCTTGAAAAAAATCAAAGCCCCTCTGAGTAAGGTACGGCTTGTAGATGCAGGCTTTGTTTGGA 444
Query 308 CTGAGCCTCATTCTAAGAGACTTAAAGTTAAACTGACTATTCAGAAAGAGGTGATGAATGGTGCTATCCTTCAA 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTGAGCCTCATTCTAAGAGACTTAAAGTTAAACTGACTATTCAGAAAGAGGTGATGAATGGTGCTATCCTTCAA 518
Query 382 CAAGTGTTTGTGGTGGATTATGTTGTTCAGTCCCAAATGTGTGGAGATTGCCATAGAGTAGAAGCTAAGGATTT 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CAAGTGTTTGTGGTGGATTATGTTGTTCAGTCCCAAATGTGTGGAGATTGCCATAGAGTAGAAGCTAAGGATTT 592
Query 456 CTGGAAGGCTGTGATTCAAGTGAGGCAAAAGACTTTGCATAAAAAAACTTTCTACTATCTGGAACAGTTAATTC 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTGGAAGGCTGTGATTCAAGTGAGGCAAAAGACTTTGCATAAAAAAACTTTCTACTATCTGGAACAGTTAATTC 666
Query 530 TGAAATATGGAATGCATCAGAATACACTTCGTATCAAAGAGATTCATGATGGTCTGGATTTTTATTATTCCTCA 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGAAATATGGAATGCATCAGAATACACTTCGTATCAAAGAGATTCATGATGGTCTGGATTTTTATTATTCCTCA 740
Query 604 AAACAACATGCTCAGAAGATGGTCGAATTTCTTCAGTGTACAGTTCCCTGTAGATACAAAGCATCACAAAGACT 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAACAACATGCTCAGAAGATGGTCGAATTTCTTCAGTGTACAGTTCCCTGTAGATACAAAGCATCACAAAGACT 814
Query 678 GATCTCTCAAGATATCCATAGTAACACATACAATTACAAAAGCACTTTTTCTGTGGAAATTGTTCCAATATGCA 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GATCTCTCAAGATATCCATAGTAACACATACAATTACAAAAGCACTTTTTCTGTGGAAATTGTTCCAATATGCA 888
Query 752 AGGATAATGTTGTCTGTCTGTCTCCAAAACTGGCACAAAGCCTGGGAAATATGAACCAGATTTGTGTGTGTATT 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGGATAATGTTGTCTGTCTGTCTCCAAAACTGGCACAAAGCCTGGGAAATATGAACCAGATTTGTGTGTGTATT 962
Query 826 CGAGTAACCAGTGCCATTCACCTCATTGATCCAAACACCCTACAAGTGGCAGATATTGATGGGAGCACTTTCTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CGAGTAACCAGTGCCATTCACCTCATTGATCCAAACACCCTACAAGTGGCAGATATTGATGGGAGCACTTTCTG 1036
Query 900 GAGTCACCCTTTCAATAGTTTATGTCATCCCAAACAGCTAGAGGAGTTTATTGTGATGGAATGCAGCATAGTCC 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GAGTCACCCTTTCAATAGTTTATGTCATCCCAAACAGCTAGAGGAGTTTATTGTGATGGAATGCAGCATAGTCC 1110
Query 974 AAGATATAAAACGTGCTGCAGGTGCTGGAATGATATCAAAAAAGCATACCCTCGGGGAAGTCTGGGTACAGAAG 1047
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AAGATATAAAACGTGCTGCAGGTGCTGGAATGATATCAAAAAA------------------------------- 1153
Query 1048 ACATCTGAAATGAATACAGATAAACAGTATTTTTGTCGTACTCATTTGGGACATCTTCTAAATCCCGGAGACCT 1121
Sbjct 1154 -------------------------------------------------------------------------- 1153
Query 1122 GGTGTTAGGGTTTGATTTGGCCAACTGTAACTTAAATGATGAGCATGTCAACAAAATGAACTCAGATAGAGTTC 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 --------GGTTTGATTTGGCCAACTGTAACTTAAATGATGAGCATGTCAACAAAATGAACTCAGATAGAGTTC 1219
Query 1196 CAGATGTGGTATTAATCAAGAAGAGCTATGACCGGACCAAACGTCAGCGTCGTAGAAACTGGAAATTGAAAGAG 1269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 CAGATGTGGTATTAATCAAGAAGAGCTATGACCGGACCAAACGTCAGCGTCGTAGAAACTGGAAATTGAAAGAG 1293
Query 1270 CTTGCAAGAGAGAGAGAAAACATGGATACAGATGATGAAAGGCAATACCAAGATTTTCTTGAAGATCTTGAAGA 1343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 CTTGCAAGAGAGAGAGAAAACATGGATACAGATGATGAAAGGCAATACCAAGATTTTCTTGAAGATCTTGAAGA 1367
Query 1344 AGATGAGGCAATTCGAAAAAATGTCAACATTTACAGAGATTCAGCCATCCCTGTGGAAAGTGACACCGATGATG 1417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 AGATGAGGCAATTCGAAAAAATGTCAACATTTACAGAGATTCAGCCATCCCTGTGGAAAGTGACACCGATGATG 1441
Query 1418 AAGGAGCACCTCGAATTAGTCTGGCTGAGATGCTTGAAGACCTTCATATTTCCCAAGATGCCACTGGTGAAGAA 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 AAGGAGCACCTCGAATTAGTCTGGCTGAGATGCTTGAAGACCTTCATATTTCCCAAGATGCCACTGGTGAAGAA 1515
Query 1492 GGTGCATCAATGCTGACA-------------------------------------------------------- 1509
||||||||||||||||||
Sbjct 1516 GGTGCATCAATGCTGACATAATGAGATGTTGTAGACTGTTTCCATACATGGGCTTAAGAAGTTGGACAGAGTTA 1589
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 1590 CCTTAAGTGTCTCTACTATCTTTGCCTCCAGATTTCAAGAGGAGAAATTTAGTTTTAAACCTGAATAAACATGT 1663
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 1664 TTGTTTTCAGTGCTCACTCAAACCACTAAAACAGATGGATAGCTTTGAGGTTTTAGATAAGGAAAGATTATGGA 1737
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 1738 GAATGTAGTTGTTATTGATTTTTGGCAATTTTACATTTGGAATTTTATCACTGTGCTTTTTTATATGAGGCACT 1811
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 1812 GTAGTATTTTCACATAGTATAGTACTCTGGATGTAAAAGCTCAAAAATTGTGATTCCTTGAACGTTCACTAAAT 1885
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 1886 CTTCAAGCAAAAACACATTTTTACATTATTTTTACGTTGATTATTTTAGTGAAAGACCATATGAAGAAGCATTT 1959
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 1960 TTAATATTAACTTGTTACATACTTTGATCCACTTTACATCATTTTTATGTTGTTGAGGTAGGGAAATTAGGGTT 2033
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2034 CAGTTTATCACTGGACATTCAGGAGGCAAGTCAATCTTTTTTATTTCCTTATAAAATTAACTCTTCAAAAGCCG 2107
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2108 TTAAACAGAGAGTTATCTTAATTTTTATTGCAGTAGGAGGAAATATATTTAAAATATTTGTAGATTTATAGCAA 2181
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2182 ATAGAGACTCGTTATTTAAAGGTTAAATAACAATTTGTTCTTTTGTTGTTTTTGCCAGTTTAGGGCAGTAGCTG 2255
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2256 CTTTTGTCATAAATATCTTCCTACCACATCAAAAATGCTGCTTTTAAAATTTTTGTTTATAAATTGAGAAGGAA 2329
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2330 TTTTCTCTCTATAAGTTTCTGTCATTGAACAGATCACCATTAAAAAGAATATTAGAATCCAGCATGAAGATAAT 2403
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2404 GGCTAATAAAAATGAGGTACATACTTTATAAAACCATTAATCAGATTTGAATGAGGAATGCTTCCCACATCCTT 2477
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2478 GAAAGAAAAACTGTGGCTTACGTTTTGAAGTATTCTGAGAATGAAGTATTAAGATCCAATTTCTATAAGCAAGA 2551
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2552 TCAGACTTGTTAAGTATGCCGCAAGTAAGAGCTAATTCATTCATTCCATGTGTGCCACTAAATAAAGAGATTGA 2625
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2626 GCAAGTGCCACTGTGTGGAACATTTTTCTTTTTTTTAATATTGGACTTTCCAATTTTGAAATTATGGATAAAGT 2699
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2700 CCTAAATTTTCTATAGTGGCTTCTTTTCTGTCTGCATATTTTGTTAAAATTGTGGATCTAAAAGCCATATCCTG 2773
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2774 TCTTTGGTGGTGGCCTGGTAGGAATGGCTTGTCCTAGTTCTTCAAAGGTAAGATTGACCAAAGCAAGTTCTCAT 2847
Query 1510 ------------------------------------------------------------------------- 1509
Sbjct 2848 TGGTGGTCTGTGTTTACATCTTCCGTGTCAAGATATTTTAAAGCATGAAAATAAAGCCATTCTTGCCCTTTTT 2920
