Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03189
- Subject:
- XR_001740167.2
- Aligned Length:
- 2956
- Identities:
- 1396
- Gaps:
- 1560
Alignment
Query 1 ------------------------------------------------------------ATGGAGTATATGGC 14
||||||||||||||
Sbjct 1 ATTTCGCTCGCGAGATCTTCTCTGTGGCGGAGACAGCCAGAACTTAAGGCATACAGAACGATGGAGTATATGGC 74
Query 15 AGAATCCACCGACCGCAGCCCTGGACACATCTTGTGCTGTGAGTGTGGTGTTCCGATAAGTCCAAATCCTGCCA 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AGAATCCACCGACCGCAGCCCTGGACACATCTTGTGCTGTGAGTGTGGTGTTCCGATAAGTCCAAATCCTGCCA 148
Query 89 ATATTTGTGTGGCCTGTTTGCGAAGTAAAGTGGACATCAGCCAAGGTATTCCGAAACAAGTCTCGATTTCGTTC 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ATATTTGTGTGGCCTGTTTGCGAAGTAAAGTGGACATCAGCCAAGGTATTCCGAAACAAGTCTCGATTTCGTTC 222
Query 163 TGCAAACAATGTCAAAGGTATTTTCAACCACCAGGAACTTGGATACAGTGTGCTTTAGAATCCAGGGAACTTCT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TGCAAACAATGTCAAAGGTATTTTCAACCACCAGGAACTTGGATACAGTGTGCTTTAGAATCCAGGGAACTTCT 296
Query 237 TGCTTTGTGCTTGAAAAAAATCAAAGCCCCTCTGAGTAAGGTACGGCTTGTAGATGCAGGCTTTGTTTGGACTG 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGCTTTGTGCTTGAAAAAAATCAAAGCCCCTCTGAGTAAGGTACGGCTTGTAGATGCAGGCTTTGTTTGGACTG 370
Query 311 AGCCTCATTCTAAGAGACTTAAAGTTAAACTGACTATTCAGAAAGAGGTGATGAATGGTGCTATCCTTCAACAA 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGCCTCATTCTAAGAGACTTAAAGTTAAACTGACTATTCAGAAAGAGGTGATGAATGGTGCTATCCTTCAACAA 444
Query 385 GTGTTTGTGGTGGATTATGTTGTTCAGTCCCAAATGTGTGGAGATTGCCATAGAGTAGAAGCTAAGGATTTCTG 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTGTTTGTGGTGGATTATGTTGTTCAGTCCCAAATGTGTGGAGATTGCCATAGAGTAGAAGCTAAGGATTTCTG 518
Query 459 GAAGGCTGTGATTCAAGTGAGGCAAAAGACTTTGCATAAAAAAACTTTCTACTATCTGGAACAGTTAATTCTGA 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GAAGGCTGTGATTCAAGTGAGGCAAAAGACTTTGCATAAAAAAACTTTCTACTATCTGGAACAGTTAATTCTGA 592
Query 533 AATATGGAATGCATCAGAATACACTTCGTATCAAAGAGATTCATGATGGTCTGGATTTTTATTATTCCTCAAAA 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AATATGGAATGCATCAGAATACACTTCGTATCAAAGAGATTCATGATGGTCTGGATTTTTATTATTCCTCAAAA 666
Query 607 CAACATGCTCAGAAGATGGTCGAATTTCTTCAGTGTACAGTTCCCTGTAGATACAAAGCATCACAAAGACTGAT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CAACATGCTCAGAAGATGGTCGAATTTCTTCAGTGTACAGTTCCCTGTAGATACAAAGCATCACAAAGACTGAT 740
Query 681 CTCTCAAGATATCCATAGTAACACATACAATTACAAAAGCACTTTTTCTGTGGAAATTGTTCCAATATGCAAGG 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTCTCAAGATATCCATAGTAACACATACAATTACAAAAGCACTTTTTCTGTGGAAATTGTTCCAATATGCAAGG 814
Query 755 ATAATGTTGTCTGTCTGTCTCCAAAACTGGCACAAAGCCTGGGAAATATGAACCAGATTTGTGTGTGTATTCGA 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 ATAATGTTGTCTGTCTGTCTCCAAAACTGGCACAAAGCCTGGGAAATATGAACCAGATTTGTGTGTGTATTCGA 888
Query 829 GTAACCAGTGCCATTCACCTCATTGATCCAAACACCCTACAAGTGGCAGATATTGATGGGAGCACTTTCTGGAG 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GTAACCAGTGCCATTCACCTCATTGATCCAAACACCCTACAAGTGGCAGATATTGATGGGAGCACTTTCTGGAG 962
Query 903 TCACCCTTTCAATAGTTTATGTCATCCCAAACAGCTAGAGGAGTTTATTGTGATGGAATGCAGCATAGTCCAAG 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TCACCCTTTCAATAGTTTATGTCATCCCAAACAGCTAGAGGAGTTTATTGTGATGGAATGCAGCATAGTCCAAG 1036
Query 977 ATATAAAACGTGCTGCAGGTGCTGGAATGATATCAAAAAAGCATACCCTCGGGGAAGTCTGGGTACAGAAGACA 1050
||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ATATAAAACGTGCTGCAGGTGCTGGAATGATATCAAAAAA---------------------------------- 1076
Query 1051 TCTGAAATGAATACAGATAAACAGTATTTTTGTCGTACTCATTTGGGACATCTTCTAAATCCCGGAGACCTGGT 1124
Sbjct 1077 -------------------------------------------------------------------------- 1076
Query 1125 GTTAGGGTTTGATTTGGCCAACTGTAACTTAAATGATGAGCATGTCAACAAAATGAACTCAGATAGAGTTCCAG 1198
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1077 -----GGTTTGATTTGGCCAACTGTAACTTAAATGATGAGCATGTCAACAAAATGAACTCAGATAGAGTTCCAG 1145
Query 1199 ATGTGGTATTAATCAAGAAGAGCTATGACCGGACCAAACGTCAGCGTCGTAGAAACTGGAAATTGAAAGAGCTT 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 ATGTGGTATTAATCAAGAAGAGCTATGACCGGACCAAACGTCAGCGTCGTAGAAACTGGAAATTGAAAGAGCTT 1219
Query 1273 GCAAGAGAGAGAGAAAACATGGATACAGATGATGAAAGGCAATACCAAGATTTTCTTGAAGATCTTGAAGAAGA 1346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 GCAAGAGAGAGAGAAAACATGGATACAGATGATGAAAGGCAATACCAAGATTTTCTTGAAGATCTTGAAGAAGA 1293
Query 1347 TGAGGCAATTCGAAAAAATGTCAACATTTACAGAGATTCAGCCATCCCTGTGGAAAGTGACACCGATGATGAAG 1420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 TGAGGCAATTCGAAAAAATGTCAACATTTACAGAGATTCAGCCATCCCTGTGGAAAGTGACACCGATGATGAAG 1367
Query 1421 GAGCACCTCGAATTAGTCTGGCTGAGATGCTTGAAGACCTTCATATTTCCCAAGATGCCACTGGTGAAGAAGGT 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1368 GAGCACCTCGAATTAGTCTGGCTGAGATGCTTGAAGACCTTCATATTTCCCAAGATGCCACTGGTGAAGAAGGT 1441
Query 1495 GCATCAATGCTGACA----------------------------------------------------------- 1509
|||||||||||||||
Sbjct 1442 GCATCAATGCTGACATAATGAGATGTTGTAGACTGTTTCCATACATGGGCTTAAGAAGTTGGACAGAGTTACCT 1515
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 1516 TAAGTGTCTCTACTATCTTTGCCTCCAGATTTCAAGAGGAGAAATTTAGTTTTAAACCTGAATAAACATGTTTG 1589
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 1590 TTTTCAGTGCTCACTCAAACCACTAAAACAGATGGATAGCTTTGAGGTTTTAGATAAGGAAAGATTATGGAGAA 1663
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 1664 TGTAGTTGTTATTGATTTTTGGCAATTTTACATTTGGAATTTTATCACTGTGCTTTTTTATATGAGGCACTGTA 1737
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 1738 GTATTTTCACATAGTATAGTACTCTGGATGTAAAAGCTCAAAAATTGTGATTCCTTGAACGTTCACTAAATCTT 1811
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 1812 CAAGCAAAAACACATTTTTACATTATTTTTACGTTGATTATTTTAGTGAAAGACCATATGAAGAAGCATTTTTA 1885
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 1886 ATATTAACTTGTTACATACTTTGATCCACTTTACATCATTTTTATGTTGTTGAGGTAGGGAAATTAGGGTTCAG 1959
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 1960 TTTATCACTGGACATTCAGGAGGCAAGTCAATCTTTTTTATTTCCTTATAAAATTAACTCTTCAAAAGCCGTTA 2033
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2034 AACAGAGAGTTATCTTAATTTTTATTGCAGTAGGAGGAAATATATTTAAAATATTTGTAGATTTATAGCAAATA 2107
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2108 GAGACTCGTTATTTAAAGGTTAAATAACAATTTGTTCTTTTGTTGTTTTTGCCAGTTTAGGGCAGTAGCTGCTT 2181
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2182 TTGTCATAAATATCTTCCTACCACATCAAAAATGCTGCTTTTAAAATTTTTGTTTATAAATTGAGAAGGAATTT 2255
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2256 TCTCTCTATAAGTTTCTGTCATTGAACAGATCACCATTAAAAAGAATATTAGAATCCAGCATGAAGATAATGGC 2329
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2330 TAATAAAAATGAGGTACATACTTTATAAAACCATTAATCAGATTTGAATGAGGAATGCTTCCCACATCCTTGAA 2403
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2404 AGAAAAACTGTGGCTTACGTTTTGAAGTATTCTGAGAATGAAGTATTAAGATCCAATTTCTATAAGCAAGATCA 2477
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2478 GACTTGTTAAGTATGCCGCAAGTAAGAGCTAATTCATTCATTCCATGTGTGCCACTAAATAAAGAGATTGAGCA 2551
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2552 AGTGCCACTGTGTGGAACATTTTTCTTTTTTTTAATATTGGACTTTCCAATTTTGAAATTATGGATAAAGTCCT 2625
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2626 AAATTTTCTATAGTGGCTTCTTTTCTGTCTGCATATTTTGTTAAAATTGTGGATCTAAAAGCCATATCCTGTCT 2699
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 2700 TTGGTGGTGGCCTGGTAGGAATGGCTTGTCCTAGTTCTTCAAAGGTAAGATTGACCAAAGCAAGTTCTCATTGG 2773
Query 1510 ---------------------------------------------------------------------- 1509
Sbjct 2774 TGGTCTGTGTTTACATCTTCCGTGTCAAGATATTTTAAAGCATGAAAATAAAGCCATTCTTGCCCTTTTT 2843
