Nucleotide Global Alignment

Description

Query:
ccsbBroad304_03660
Subject:
XM_011523233.2
Aligned Length:
2157
Identities:
1974
Gaps:
183

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCCTGCCAGCAGTCGCGGTACCACAGCTTCTCGTCCGCGTCGAGATTACAGCCACGGCCTTCAGGAGTGAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CATAGACGAATCCTTTCTCACAGAAGACAAGAGCACCCAGAATCGCAAGCTTCTTCAGAAACGAAGGACGCTGA  148

Query    1  --------------ATGGGTGGGCACCTGTCCCCATGGCCCACATACACCAGTGGCCAGACCATTTTGCAAAAT  60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CTGGTCAGTTCTCCATGGGTGGGCACCTGTCCCCATGGCCCACATACACCAGTGGCCAGACCATTTTGCAAAAT  222

Query   61  CGAAAACCCTGTTCAGATGACTACCGGAAGCGAGTAGGGAGCTGCCAGCAGCACCCCTTTCGCACTGCCAAGCC  134
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CGAAAACCCTGTTCAGATGACTACCGGAAGCGAGTAGGGAGCTGCCAGCAGCACCCCTTTCGCACTGCCAAGCC  296

Query  135  CCAGTACTTGGAGGAACTGGAAAACTACCTACGCAAGGAGCTCCTCCTGCTGGACCTGGGCACAGATTCCACCC  208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CCAGTACTTGGAGGAACTGGAAAACTACCTACGCAAGGAGCTCCTCCTGCTGGACCTGGGCACAGATTCCACCC  370

Query  209  AGGAACTAAGGCTGCAGCCTTACAGAGAGATCTTTGAGTTCTTCATAGAGGACTTCAAAACGTACAAGCCATTA  282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGGAACTAAGGCTGCAGCCTTACAGAGAGATCTTTGAGTTCTTCATAGAGGACTTCAAAACGTACAAGCCATTA  444

Query  283  CTATCCTCCATCAAGAATGCGTATGAGGGGATGCTGGCCCACCAAAGGGAGAAGATTCGGGCTCTGGAGCCCCT  356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CTATCCTCCATCAAGAATGCGTATGAGGGGATGCTGGCCCACCAAAGGGAGAAGATTCGGGCTCTGGAGCCCCT  518

Query  357  GAAGGCCAAGCTTGTCACTGTGAATGAGGACTGCAATGAGAGGATCCTGGCCATGAGAGCTGAGGAGAAATATG  430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GAAGGCCAAGCTTGTCACTGTGAATGAGGACTGCAATGAGAGGATCCTGGCCATGAGAGCTGAGGAGAAATATG  592

Query  431  AAATCTCCCTGCTCAAGAAAGAGAAGATGAACTTGCTAAAACTCATCGACAAAAAGAATGAGGAGAAGATTTCA  504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AAATCTCCCTGCTCAAGAAAGAGAAGATGAACTTGCTAAAACTCATCGACAAAAAGAATGAGGAGAAGATTTCA  666

Query  505  TTGCAGAGCGAGGTGACCAAACTGAGGAAGAACTTGGCTGAGGAGTACCTGCACTACCTCAGTGAGCGAGATGC  578
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TTGCAGAGCGAGGTGACCAAACTGAGGAAGAACTTGGCTGAGGAGTACCTGCACTACCTCAGTGAGCGAGATGC  740

Query  579  CTGTAAGATCCTCATCGCAGACCTGAATGAGCTGCGGTACCAGCGGGAGGACATGTCATTAGCCCAGTCGCCAG  652
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CTGTAAGATCCTCATCGCAGACCTGAATGAGCTGCGGTACCAGCGGGAGGACATGTCATTAGCCCAGTCGCCAG  814

Query  653  GCATCTGGGGGGAGGACCCTGTGAAGTTAACCCTGGCTCTTAAGATGACCCGGCAAGACCTGACCCGCACGCAG  726
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GCATCTGGGGGGAGGACCCTGTGAAGTTAACCCTGGCTCTTAAGATGACCCGGCAAGACCTGACCCGCACGCAG  888

Query  727  ATGGAACTCAACAACATGAAGGCCAACTTTGGAGATGTGGTCCCCAGGAGGGACTTTGAAATGCAGGAGAAGAC  800
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ATGGAACTCAACAACATGAAGGCCAACTTTGGAGATGTGGTCCCCAGGAGGGACTTTGAAATGCAGGAGAAGAC  962

Query  801  CAACAAGGATCTTCAGGAG---------------------CAGCTGGACACCCTGAGAGCCAGCTACGAGGAGG  853
            |||||||||||||||||||                     ||||||||||||||||||||||||||||||||||
Sbjct  963  CAACAAGGATCTTCAGGAGCAGGGCCAATGTCCTTGCCCACAGCTGGACACCCTGAGAGCCAGCTACGAGGAGG  1036

Query  854  TTCGCAAGGAGCATGAGATCCTCATGCAGCTGCACATGAGCACGCTGAAGGAACGGGACCAATTCTTCTCTGAG  927
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TTCGCAAGGAGCATGAGATCCTCATGCAGCTGCACATGAGCACGCTGAAGGAACGGGACCAATTCTTCTCTGAG  1110

Query  928  CTGCAGGAGATCCAGCGCACTTCCACGCCGCGGCCTGACTGGACCAAGTGCAAAGATGTGGTGGCTGGGGGCCC  1001
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CTGCAGGAGATCCAGCGCACTTCCACGCCGCGGCCTGACTGGACCAAGTGCAAAGATGTGGTGGCTGGGGGCCC  1184

Query 1002  AGAGCGCTGGCAGATGCTGGCTGAGGGCAAGAACAGCGACCAGCTGGTGGACGTGCTCCTGGAAGAGATTGGTT  1075
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AGAGCGCTGGCAGATGCTGGCTGAGGGCAAGAACAGCGACCAGCTGGTGGACGTGCTCCTGGAAGAGATTGGTT  1258

Query 1076  CGGGGCTGCTGCGGGAGAAAGACTTCTTCCCTGGTCTGGGCTATGGGGAAGCCATCCCTGCTTTTCTTCGGTTT  1149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CGGGGCTGCTGCGGGAGAAAGACTTCTTCCCTGGTCTGGGCTATGGGGAAGCCATCCCTGCTTTTCTTCGGTTT  1332

Query 1150  GATGGCCTCGTGGAGAACAAGAAGCCAAGCAAGAAGGACGTGGTCAACCTCCTCAAGGATGCCTGGAAGGAACG  1223
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  GATGGCCTCGTGGAGAACAAGAAGCCAAGCAAGAAGGACGTGGTCAACCTCCTCAAGGATGCCTGGAAGGAACG  1406

Query 1224  TCTTGCTGAGGAGCAGAAAGAGACGTTCCCAGATTTCTTCTTCAATTTCCTGGAGCATCGCTTTGGGCCCAGTG  1297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TCTTGCTGAGGAGCAGAAAGAGACGTTCCCAGATTTCTTCTTCAATTTCCTGGAGCATCGCTTTGGGCCCAGTG  1480

Query 1298  ATGCCATGGCCTGGGCTTATACTATTTTTGAAAATATCAAGATCTTCCACTCCAACGAGGTTATGAGTCAGTTC  1371
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  ATGCCATGGCCTGGGCTTATACTATTTTTGAAAATATCAAGATCTTCCACTCCAACGAGGTTATGAGTCAGTTC  1554

Query 1372  TATGCAGTCTTGATGGGAAAGCGGAGTGAGAATGTGTATGTCACCCAGAAGGAGACAGTAGCCCAGCTGCTGAA  1445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TATGCAGTCTTGATGGGAAAGCGGAGTGAGAATGTGTATGTCACCCAGAAGGAGACAGTAGCCCAGCTGCTGAA  1628

Query 1446  GGAGATGACAAATGCTGACAGTCAGAACGAGGGGCTACTAACCATGGAGCAGTTCAACACTGTCCTCAAGAGTA  1519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GGAGATGACAAATGCTGACAGTCAGAACGAGGGGCTACTAACCATGGAGCAGTTCAACACTGTCCTCAAGAGTA  1702

Query 1520  CCTTCCCTCTCAAGACAGAAGAGCAAATCCAGGAGCTGATGGAGGCAGGGGGCTGGCATCCCAGCAGCAGCAAT  1593
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  CCTTCCCTCTCAAGACAGAAGAGCAAATCCAGGAGCTGATGGAGGCAGGGGGCTGGCATCCCAGCAGCAGCAAT  1776

Query 1594  GCAGACTTGCTCAACTACCGCTCACTGTTTATGGAGGATGAGGAGGGCCAGAGTGAGCCCTTTGTGCAAAAACT  1667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  GCAGACTTGCTCAACTACCGCTCACTGTTTATGGAGGATGAGGAGGGCCAGAGTGAGCCCTTTGTGCAAAAACT  1850

Query 1668  CTGGGAACAATACATGGATGAGAAGGACGAGTACTTACAGCAGCTAAAGCAGGAGCTTGGCATAGAACTCCATG  1741
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CTGGGAACAATACATGGATGAGAAGGACGAGTACTTACAGCAGCTAAAGCAGGAGCTTGGCATAGAACTCCATG  1924

Query 1742  AGGAAGTGACTCTGCCCAAGCTGCGAGGGGGCCTGATGACCATCGACCCCAGCCTGGACAAGCAGACAGTGAAC  1815
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  AGGAAGTGACTCTGCCCAAGCTGCGAGGGGGCCTGATGACCATCGACCCCAGCCTGGACAAGCAGACAGTGAAC  1998

Query 1816  ACCTACATGAGCCAGGCCTTCCAGCTCCCTGAGTCGGAAATGCCAGAGGAGGGTGACGAGAAGGAAGAAGCCGT  1889
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  ACCTACATGAGCCAGGCCTTCCAGCTCCCTGAGTCGGAAATGCCAGAGGAGGGTGACGAGAAGGAAGAAGCCGT  2072

Query 1890  GGTGGAAATCCTCCAGACTGCCCTGGAGCGGCTTCAGGTGATTGACATCAGGCGTGTGGGACCTCGAGAGCCAG  1963
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  GGTGGAAATCCTCCAGACTGCCCTGGAGCGGCTTCAGGTGATTGACATCAGGCGTGTGGGACCTCGAGAGCCAG  2146

Query 1964  AGCCTGCAAGC  1974
            |||||||||||
Sbjct 2147  AGCCTGCAAGC  2157

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.