Construct: ORF ccsbBroad304_03660

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010050.1_s304c1, BRDN0000461705
Derived from:
ccsbBroadEn_03660
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TSNAXIP1 (55815)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03660
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55815 TSNAXIP1 translin associated factor ... NM_018430.4 100% 100%
2 human 55815 TSNAXIP1 translin associated factor ... XM_011523235.1 95.3% 95.3% 820_840del;1002_1076del
3 human 55815 TSNAXIP1 translin associated factor ... NM_001288990.3 92.4% 92.4% 1_162del
4 human 55815 TSNAXIP1 translin associated factor ... XM_011523233.2 91.5% 91.5% 1_162del;982_1002del
5 human 55815 TSNAXIP1 translin associated factor ... NM_001288991.3 90.5% 83.6% (many diffs)
6 human 55815 TSNAXIP1 translin associated factor ... XM_011523232.2 90.3% 90.3% 1_162del;982_1002del;1164_1190del
7 human 55815 TSNAXIP1 translin associated factor ... XM_017023448.1 89.9% 86.8% (many diffs)
8 human 55815 TSNAXIP1 translin associated factor ... XM_011523231.2 89.2% 89.2% 1_162del;1143_1217del
9 human 55815 TSNAXIP1 translin associated factor ... XM_017023446.1 88.7% 85.6% (many diffs)
10 human 55815 TSNAXIP1 translin associated factor ... XM_011523230.2 88.4% 88.4% 1_162del;982_1002del;1164_1238del
11 human 55815 TSNAXIP1 translin associated factor ... XM_011523237.2 88% 85% (many diffs)
12 human 55815 TSNAXIP1 translin associated factor ... XM_017023445.2 87.3% 80.6% (many diffs)
13 human 55815 TSNAXIP1 translin associated factor ... XM_005256049.4 87.2% 87.2% 1_162del;980_981ins111
14 human 55815 TSNAXIP1 translin associated factor ... XM_024450350.1 86.7% 83.6% (many diffs)
15 human 55815 TSNAXIP1 translin associated factor ... XM_011523236.3 86.5% 79.8% (many diffs)
16 human 55815 TSNAXIP1 translin associated factor ... XM_011523238.1 85.8% 82.8% (many diffs)
17 human 55815 TSNAXIP1 translin associated factor ... XM_017023449.2 85.1% 78.1% (many diffs)
18 human 55815 TSNAXIP1 translin associated factor ... NM_001351158.2 84.4% 81.2% (many diffs)
19 human 55815 TSNAXIP1 translin associated factor ... XM_011523234.2 84.2% 84.2% 1_162del;980_981ins111;1032_1106del
20 human 55815 TSNAXIP1 translin associated factor ... XM_017023450.1 84.1% 84.1% 0_1ins312
21 human 55815 TSNAXIP1 translin associated factor ... XM_017023451.1 84.1% 84.1% 0_1ins312
22 human 55815 TSNAXIP1 translin associated factor ... XM_017023447.2 82.1% 75.4% (many diffs)
23 human 55815 TSNAXIP1 translin associated factor ... XM_011523240.1 80.2% 80.2% 0_1ins312;508_528del;690_764del
24 human 55815 TSNAXIP1 translin associated factor ... XM_017023453.1 79.3% 79.3% 0_1ins408
25 human 55815 TSNAXIP1 translin associated factor ... XM_017023454.1 79.3% 79.3% 0_1ins408
26 human 55815 TSNAXIP1 translin associated factor ... XM_024450351.1 78.7% 78.7% 1_162del;385_386ins291
27 human 55815 TSNAXIP1 translin associated factor ... XM_017023452.1 76.4% 76.4% 0_1ins408;573_647del
28 human 55815 TSNAXIP1 translin associated factor ... XM_011523241.1 75.6% 75.6% 0_1ins408;412_432del;594_668del
29 human 55815 TSNAXIP1 translin associated factor ... XM_011523242.1 75.6% 75.6% 0_1ins408;412_432del;594_668del
30 human 55815 TSNAXIP1 translin associated factor ... XM_011523239.1 75.4% 75.4% (many diffs)
31 human 55815 TSNAXIP1 translin associated factor ... XM_017023455.1 73.7% 73.7% 0_1ins408;410_411ins111
32 human 55815 TSNAXIP1 translin associated factor ... XM_011523243.1 64.9% 64.9% 0_1ins630;190_210del;372_446del
33 human 55815 TSNAXIP1 translin associated factor ... NM_001288992.3 55.6% 55.6% 0_1ins876
34 human 55815 TSNAXIP1 translin associated factor ... NM_001288993.3 55.6% 55.6% 0_1ins876
35 human 55815 TSNAXIP1 translin associated factor ... NM_001288994.3 55.6% 55.6% 0_1ins876
36 human 55815 TSNAXIP1 translin associated factor ... XM_024450352.1 53.5% 53.5% 0_1ins876;105_179del
37 human 55815 TSNAXIP1 translin associated factor ... XM_024450353.1 53.5% 53.5% 0_1ins876;105_179del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2043
ORF length:
1974
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gggtgggcac ctgtccccat ggcccacata caccagtggc cagaccattt
121tgcaaaatcg aaaaccctgt tcagatgact accggaagcg agtagggagc tgccagcagc
181acccctttcg cactgccaag ccccagtact tggaggaact ggaaaactac ctacgcaagg
241agctcctcct gctggacctg ggcacagatt ccacccagga actaaggctg cagccttaca
301gagagatctt tgagttcttc atagaggact tcaaaacgta caagccatta ctatcctcca
361tcaagaatgc gtatgagggg atgctggccc accaaaggga gaagattcgg gctctggagc
421ccctgaaggc caagcttgtc actgtgaatg aggactgcaa tgagaggatc ctggccatga
481gagctgagga gaaatatgaa atctccctgc tcaagaaaga gaagatgaac ttgctaaaac
541tcatcgacaa aaagaatgag gagaagattt cattgcagag cgaggtgacc aaactgagga
601agaacttggc tgaggagtac ctgcactacc tcagtgagcg agatgcctgt aagatcctca
661tcgcagacct gaatgagctg cggtaccagc gggaggacat gtcattagcc cagtcgccag
721gcatctgggg ggaggaccct gtgaagttaa ccctggctct taagatgacc cggcaagacc
781tgacccgcac gcagatggaa ctcaacaaca tgaaggccaa ctttggagat gtggtcccca
841ggagggactt tgaaatgcag gagaagacca acaaggatct tcaggagcag ctggacaccc
901tgagagccag ctacgaggag gttcgcaagg agcatgagat cctcatgcag ctgcacatga
961gcacgctgaa ggaacgggac caattcttct ctgagctgca ggagatccag cgcacttcca
1021cgccgcggcc tgactggacc aagtgcaaag atgtggtggc tgggggccca gagcgctggc
1081agatgctggc tgagggcaag aacagcgacc agctggtgga cgtgctcctg gaagagattg
1141gttcggggct gctgcgggag aaagacttct tccctggtct gggctatggg gaagccatcc
1201ctgcttttct tcggtttgat ggcctcgtgg agaacaagaa gccaagcaag aaggacgtgg
1261tcaacctcct caaggatgcc tggaaggaac gtcttgctga ggagcagaaa gagacgttcc
1321cagatttctt cttcaatttc ctggagcatc gctttgggcc cagtgatgcc atggcctggg
1381cttatactat ttttgaaaat atcaagatct tccactccaa cgaggttatg agtcagttct
1441atgcagtctt gatgggaaag cggagtgaga atgtgtatgt cacccagaag gagacagtag
1501cccagctgct gaaggagatg acaaatgctg acagtcagaa cgaggggcta ctaaccatgg
1561agcagttcaa cactgtcctc aagagtacct tccctctcaa gacagaagag caaatccagg
1621agctgatgga ggcagggggc tggcatccca gcagcagcaa tgcagacttg ctcaactacc
1681gctcactgtt tatggaggat gaggagggcc agagtgagcc ctttgtgcaa aaactctggg
1741aacaatacat ggatgagaag gacgagtact tacagcagct aaagcaggag cttggcatag
1801aactccatga ggaagtgact ctgcccaagc tgcgaggggg cctgatgacc atcgacccca
1861gcctggacaa gcagacagtg aacacctaca tgagccaggc cttccagctc cctgagtcgg
1921aaatgccaga ggagggtgac gagaaggaag aagccgtggt ggaaatcctc cagactgccc
1981tggagcggct tcaggtgatt gacatcaggc gtgtgggacc tcgagagcca gagcctgcaa
2041gcttgccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
2101tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
2161tctggatta

Download FASTA (ORF) (Full)

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