Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03707
- Subject:
- NM_018909.4
- Aligned Length:
- 2900
- Identities:
- 1750
- Gaps:
- 895
Alignment
Query 1 ATGGTTT-----CCAGATG-TAGCTGCCTGGGGGTCCAGTGTCTGCTGCTCTCGCTTCTTCTCCTCGCAGCCTG 68
|||||.| ||.||.| |||.| ||||....||.||||||||.|||.|||||||.||||||||||||||
Sbjct 1 ATGGTGTTTACCCCGGAGGATAGAT---TGGGAAAGCAATGTCTGCTCCTCCCGCTTCTGCTCCTCGCAGCCTG 71
Query 69 GGAGGTGGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACACGGCACCTTCGTGGGCCGCATCG 142
|.||||||||||||||||||||||||||||.||...|||||||||||.|||||||||||||||||||||.||||
Sbjct 72 GAAGGTGGGGAGCGGCCAGCTCCACTACTCCGTACCCGAGGAGGCCAAACACGGCACCTTCGTGGGCCGGATCG 145
Query 143 CGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAAGA-CACGGGGA 215
||||||||||||||||||||||||||||||||||||.||||||||||.||.||||.||| ||||| |.||.|||
Sbjct 146 CGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCAGGATGGCCTCC-AAAGACCGCGAGGA 218
Query 216 CCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATTGACCGCGAGGAGCTGTGCGGGC 289
|||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 219 CCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCGGGC 292
Query 290 GGAGCGTGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAA 363
||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 293 GGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGGAG 366
Query 364 GTGAAGGACATTAACGACAACCCGCCCAGGTTCTCCGTAACAGAACAAA-AGCTCTCA-ATACCTGAATCCAGA 435
||||.||||||||||||||||||||||..||||.|.|||...||||||| ||..||.| .||| |||||.||.
Sbjct 367 GTGAGGGACATTAACGACAACCCGCCCTTGTTCCCGGTAGAGGAACAAAGAGTGCTGATTTAC--GAATCTAGG 438
Query 436 CTGCTTGACTCTCGATTTCCACTAGAAGGCGCATCTGATGCGGATGTTGGAGAGAACGC--ATTGC----TTAC 503
||||..||.|||...||||||||.||.|||||.||.|||||.|||||||| |.| |||.| |.||
Sbjct 439 CTGCCAGATTCTGTGTTTCCACTGGAGGGCGCGTCCGATGCAGATGTTGG------CTCAAATTCCATCTTAAC 506
Query 504 TTACAAACTCAGTCCAAATGAGTATTTTGTTCTTGAT---ATTATAAACAAAAAAGACAA-AGACAAATTCCCA 573
.||.|||||||||.|.|..||.||.||.|..||.||| |..|||||||...|.||||| |.|||||||
Sbjct 507 CTATAAACTCAGTTCTAGCGAATACTTCGGGCTAGATGTGAAAATAAACAGTGATGACAATAAACAAATT---- 576
Query 574 GTG--CTTGTTCTGCGGAAG-----CTGCTGGATCGTGAAGAAAATCCT-CAGCTAAAGTTGTTGTTGACAGCA 639
|.| |||.|| .||| || ||||..|.||.|||..|||| || |..||.||.||..|||||||.
Sbjct 577 GGGCTCTTATT-----AAAGAAATCCT--TGGACAGAGAGGAAGCTCCTGCA-CACAACTTATTCCTGACAGCC 642
Query 640 ACTGATGGAGGCAAACCTGAATTTACCGGATCTGTTTCTCTGCTGATCCTGGTGTTAGATGCCAATGATAACGC 713
||.|||||.|||||||||||..|.||.||..|||||...||||||.||...|||.|.||||..||||||||.||
Sbjct 643 ACAGATGGGGGCAAACCTGAGCTCACAGGCACTGTTCAGCTGCTGGTCACAGTGCTGGATGTGAATGATAATGC 716
Query 714 CCCTATCTTT--GACAGACCGGTTTATGAAGTTAAGATGTAT--GAAAATCAAGTGAACCAAACATTAGTAATA 783
.||.| |||| .|||| .|.|..||.|||| ||||| .||| ||||||..||..|||..||||..|||.||.
Sbjct 717 TCCCA-CTTTCGAACAG-TCTGAATACGAAG-TAAGA-ATATTCGAAAATGCAGACAACGGAACAACAGTTATC 786
Query 784 CGGCTCAACGCTTCTGATTCGGATGAAGGAATAAACAAGGAAATGATGTATTCATT---TAGCTCTTTGGTCCC 854
.|.||.||.|||||||||..||||||||||...||...||.|||....|||||.|| |||| ||| ||..|
Sbjct 787 AGACTGAATGCTTCTGATCGGGATGAAGGAGCGAATGGGGCAATTTCATATTCTTTTAATAGC-CTT--GTTGC 857
Query 855 ACCCACGATAA--GAAGGAAATTTTGGATA-AACGAAAGGACGGGAGAAATAAAAGTAAATGATGC-------T 918
|.|||.|.|.| || ..|.|||.|.||| |.||||| .||||||||||| |.||||.| |
Sbjct 858 AGCCATGGTTATTGA--CCACTTTAGCATAGATCGAAA-TACGGGAGAAAT-------AGTGATTCGGGGTAAT 921
Query 919 ATTGACTTTGAGGACAGTAACACTTAT--GAAAT--TCATGTAGATGTTACAGATAAGGGAAACCCACCTATGG 988
.|.||.||||| |||..||.|||||| .|||| ||| |.||.|..||.||.||.||..|.||.||.||||
Sbjct 922 TTGGATTTTGA--ACAAGAAAACTTATACAAAATCCTCA--TTGACGCCACGGACAAAGGCCATCCTCCCATGG 991
Query 989 TTGGTCACTGCACGGTCCTAGTG-GAACTACTGGATGAAAATGATAA-TTCACCTGAGGTGATTG---TCACTT 1057
..|||||.|||||.||..||||| ||| |..|||||.|||||||||| .|| ||||| |||.| |.||||
Sbjct 992 CGGGTCATTGCACCGTTTTAGTGAGAA-TTTTGGATAAAAATGATAACGTC-CCTGA---GATAGCACTGACTT 1060
Query 1058 CTCTGTCTCTCCCAGTGAAAGAAGATGCTCAAGTGGGCACCGTCATTGCCCTAATCAGCGTTTCTGACCATGAT 1131
|..|.||..|.||.||....|||||.||||||.|.||.||.|||||.||||||||.|||||....||||..|||
Sbjct 1061 CCTTATCCTTGCCTGTACGTGAAGACGCTCAATTTGGTACTGTCATCGCCCTAATTAGCGTGAACGACCTCGAT 1134
Query 1132 TCAGGAGCCAACGGACAGGTCACCTGCTCTCTGACGCCTCACGTTCCGTTCAAGCTGGTGTCCACCTACAAGAA 1205
|||||.||||||||.|||||.|.||||||.||||||||||||||.||.|||||||||||||||||||.||||||
Sbjct 1135 TCAGGTGCCAACGGGCAGGTGAACTGCTCGCTGACGCCTCACGTCCCTTTCAAGCTGGTGTCCACCTTCAAGAA 1208
Query 1206 TTACTACTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGGGTGTCGGCCTATGAGCTGGTGGTGACCGCGC 1279
|||||||||.||||||||||||||.||.||||||||||||||.|||||||||||||||.|||||||.|||||||
Sbjct 1209 TTACTACTCGTTGGTGCTGGACAGTGCCCTGGACCGCGAGAGCGTGTCGGCCTATGAGTTGGTGGTAACCGCGC 1282
Query 1280 GGGACGGGGGCTCGCCTCCGCTGTGGGCCACGGCCAGCGTGTCTGTGGAGGTGGCCGACGTGAACGACAACGCG 1353
|||||||||||||||||.|||||||||||||.||||||.||||||||||||||||||||.||||.|||||.||.
Sbjct 1283 GGGACGGGGGCTCGCCTTCGCTGTGGGCCACCGCCAGCTTGTCTGTGGAGGTGGCCGACATGAATGACAATGCT 1356
Query 1354 CCTGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAACCCGCCAGGCTGCCACATCTTCACGGT 1427
||.||||||||||||.||||||||||.||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 1357 CCGGCGTTCGCGCAGCCCGAGTACACAGTGTTCGTGAAGGAGAACAACCCGCCGGGCTGCCACATCTTCACGGT 1430
Query 1428 GTCTGCGTGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCTCTGGTGGAGCGGCGGTTGGGCGAGC 1501
|||||||.|.|||||||||||||||||||||||.||||||||||||||.|||||||||||||||.|||||||||
Sbjct 1431 GTCTGCGCGAGACGCGGACGCGCAGGAGAACGCGCTGGTGTCCTACTCGCTGGTGGAGCGGCGGGTGGGCGAGC 1504
Query 1502 GCTCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAG 1575
||.||.|||||||||||.|.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1505 GCGCGTTGTCGAGCTACATTTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAGCCGCTGGACCACGAG 1578
Query 1576 GAGCTGGAGCTGCTACAGTTCCAG-------------------------------------------------- 1599
|||||.||||||||.|||||.|||
Sbjct 1579 GAGCTAGAGCTGCTGCAGTTTCAGGTGAGCGCGCGCGACGCGGGCGTGCCGCCTCTGGGCAGCAACGTGACGCT 1652
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1653 GCAGGTGTTCGTGCTGGACGAGAACGACAACGCGCCGGCGCTGCTGGCGCCTCGGGTGGGTGGTACTGGTGGTG 1726
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1727 CAGTGAGCGAGCTGGTGCCGCGGTCACTGGGTGCAGGCCAAGTGGTGGCGAAGGTGCGCGCAGTTGACGCCGAC 1800
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1801 TCAGGCTACAACGCGTGGCTTTCGTATGAGCTGCAGCCCCCGGCAAGCAGCGCTCGCTTCCCGTTTCGCGTGGG 1874
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1875 GCTGTACACGGGCGAGATCAGCACCACTCGTGTCCTGGACGAAGCGGACTCTCCGCGCCACCGGCTGCTGGTGC 1948
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1949 TGGTGAAAGACCACGGTGAGCCGGCGCTGACAGCGACGGCCACGGTTCTGGTGTCGCTGGTGGAGAGTGGCCAG 2022
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2023 GCTCCAAAGGCGTCATCACGGGCGTCGGTGGGCGCCGCGGGCCCAGAGGCGGCGCTGGTGGATGTCAACGTGTA 2096
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2097 CCTGATCATCGCCATCTGCGCGGTATCCAGCCTGCTGGTCCTCACGCTACTGCTGTACACAGCGCTGCGGTGCT 2170
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2171 CGGCGCCACCCACCGAGGGCGCGTGCACGGCGGACAAGCCCACGCTGGTGTGCTCCAGCGCAGTGGGGAGCTGG 2244
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2245 TCGTACTCGCAGCAGAGGCGGCAGAGGGTGTGCTCCGGGGAGGGCCCACCCAAGATGGATCTCATGGCCTTTAG 2318
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2319 CCCCAGCCTTTCACCTTGTCCTATTATGATGGGTAAGGCGGAGAATCAGGATTTAAATGAAGATCATGATGCCA 2392
Query 1600 --CCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTA 1671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2393 AACCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTA 2466
Query 1672 GAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACC 1745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2467 GAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGTGCAACACC 2540
Query 1746 AGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACG 1819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2541 AGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAACAGCAACAGCTGGACCTTTAAATACG 2614
Query 1820 GACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATC 1893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2615 GACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATC 2688
Query 1894 ATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGA 1967
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2689 ATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGA 2762
Query 1968 GACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTG 2041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2763 GACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAACAGCACGACTG 2836
Query 2042 ACAACAGTGACCAG 2055
||||||||||||||
Sbjct 2837 ACAACAGTGACCAG 2850
