Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03707
- Subject:
- NM_018911.3
- Aligned Length:
- 2926
- Identities:
- 1742
- Gaps:
- 947
Alignment
Query 1 ATGGTTT--------CCAGATGTAGCTGCCTGGGGGTCC-AGTGTCTGCTGCTCTCGCTTCTTCTCCTCGCAGC 65
||||.|| |.||..| |||| |||.||| .|.|.||.||.||||.||||||.|||||||||||
Sbjct 1 ATGGATTATCACTGGCGAGGAG-AGCT-----GGGATCCTGGCGACTACTACTCTTGCTTCTGCTCCTCGCAGC 68
Query 66 CTGGGAGGTGGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACACGGCACCTTCGTGGGCCGCA 139
||||.||||||||||||||||||||||||||||.|||..|||||||||||.|||||||||||||||||||||.|
Sbjct 69 CTGGAAGGTGGGGAGCGGCCAGCTCCACTACTCCGTCCCCGAGGAGGCCAAACACGGCACCTTCGTGGGCCGGA 142
Query 140 TCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAGCGCCTGTTCCGGGTGGCGTCCAAAAGACACGGG 213
|||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||.||
Sbjct 143 TCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCCGCGCCTGTTCCGGGTGGCGTCCAAAAGACACCGG 216
Query 214 GACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATTGACCGCGAGGAGCTGTGCGG 287
||||||||||||||||.||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 217 GACCTTCTGGAGGTAAGTCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGCGAGGAGCTGTGCGG 290
Query 288 GCGGAGCGTGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGG 361
||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GCGGAGCGCGGAGTGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTGG 364
Query 362 AAGTGAAGGACATTAACGACAACCCGCCCAG-GTTCTCCGTAACAGAACAAAAGCTCTCAATACCTGAATCCAG 434
|.||||||||..||||.||||||||| |||| ||||...||||.|||.||||||||.|...|..|.||||||||
Sbjct 365 AGGTGAAGGATGTTAATGACAACCCG-CCAGTGTTCCGGGTAAAAGACCAAAAGCTGTTTGTTTCAGAATCCAG 437
Query 435 ACTGCTTGACTCTCGATTTCCACTAGAAGGCGCATCTGATGCGGATGTTGGAGAGAACGCATTGCTTACTTACA 508
|.|||..||||||||.|||||.|||||.|||||.||.|||||.||||||||||..|||.|..||.|.||.||||
Sbjct 438 AATGCCAGACTCTCGGTTTCCGCTAGAGGGCGCGTCCGATGCAGATGTTGGAGCTAACTCCGTGTTAACCTACA 511
Query 509 AACTCAGTCCAAATGAGTATTTTGTTCTTGAT----ATTATAAACAAAAAAGACAAAGACAAATTCCCAGTGCT 578
..||.||..|..||||.||.||..|.||.||| ||| ||||.| ||.|.||.||
Sbjct 512 GGCTTAGCTCTCATGATTACTTCATGCTAGATGTGAATT-----CAAAGA--ACGATGAGAA------------ 566
Query 579 TGTTCTGCGGAAGCTGCTGGA--TCG--TGAAGAAAATCCT----CAGCTAAAG------------------TT 626
.||.|||.|.|| ||| |.||||||||||| ||| |.|| ||
Sbjct 567 ---------TAAACTGGTTGAGCTCGTATTAAGAAAATCCTTGGACAG--AGAGGACGCTCCTGCGCACCACTT 629
Query 627 GTTGTTGACAGCAACTGATGGAGGCAAACCTGAATTTACCGGATCTGTTTCTCTGCTGATCCTGGTGTTAGATG 700
.||..|||||||.||.|||||.|||||||||||..|.||.||..|||||...||||||.||...|||.|.||||
Sbjct 630 ATTCCTGACAGCCACAGATGGGGGCAAACCTGAGCTCACAGGCACTGTTCAGCTGCTGGTCACAGTGCTGGATG 703
Query 701 CCAATGATAACGCCCCTATCTTT--GACAGACCGGTTTATGAAGTTAAGATGTAT--GAAAATCAAGTGAACCA 770
..||||||||.||.||.| |||| .|||| .|.|..||.|||| ||||| .||| |||||...||..|||..
Sbjct 704 TGAATGATAATGCTCCCA-CTTTCGAACAG-TCTGAATACGAAG-TAAGA-ATATTCGAAAACGCAGACAACGG 773
Query 771 AACATTAGTAATACGGCTCAACGCTTCTGATTCGGATGAAGGAATAAACAAGGAAATGATGTATTCATT---TA 841
||||..|||.||....||.||.|||||||||.|||||||||||...||...||.|||....|||||.|| ||
Sbjct 774 AACAACAGTTATCAAACTGAATGCTTCTGATCCGGATGAAGGAGCCAATGGGGCAATTTCATATTCTTTTAATA 847
Query 842 GCTCTT----------TGGT-----CCCACCCACGATAAGAAGGAAATTTTGGATA-AACGAAAGGACGGGAGA 899
|| ||| |||| .|||| |||.|.||| |.||||| .||||||||
Sbjct 848 GC-CTTGTTGAAACTATGGTTATTGACCAC-----------------TTTAGCATAGATCGAAA-TACGGGAGA 902
Query 900 AATAAAAGTAAATGATGC-------TATTGACTTTGAGGACAGTAACACTTAT--GAAAT--TCATGTAGATGT 962
||| |.||||.| |.|.||.||||| |||..||.|||||| .|||| ||| |.||.|.
Sbjct 903 AAT-------AGTGATTCGGGGTAATTTGGATTTTGA--ACAAGAAAACTTATACAAAATCCTCA--TTGACGC 965
Query 963 TACAGATAAGGGAAACCCACCTATGGTTGGTCACTGCACGGTCCTAGTG-GAACTACTGGATGAAAATGATAA- 1034
.||.||.||.||..|.||.||.||||..|||||.|||||.||..||||| ||| |..|||||.||||||||||
Sbjct 966 CACGGACAAAGGCCATCCTCCCATGGCGGGTCATTGCACCGTTTTAGTGAGAA-TTTTGGATAAAAATGATAAC 1038
Query 1035 TTCACCTGAGGTGATTG---TCACTTCTCTGTCTCTCCCAGTGAAAGAAGATGCTCAAGTGGGCACCGTCATTG 1105
.|| ||||| |||.| |.|||||..|.||..|.||.||....|||||.||||||.|.||.||.|||||.|
Sbjct 1039 GTC-CCTGA---GATAGCACTGACTTCCTTATCCTTGCCTGTACGTGAAGACGCTCAATTTGGTACTGTCATCG 1108
Query 1106 CCCTAATCAGCGTTTCTGACCATGATTCAGGAGCCAACGGACAGGTCACCTGCTCTCTGACGCCTCACGTTCCG 1179
|||||||.|||||....||||..||||||||.||||||||.|||||.||||||||.||||.|||.||.||.||.
Sbjct 1109 CCCTAATTAGCGTGAACGACCTCGATTCAGGTGCCAACGGGCAGGTGACCTGCTCCCTGATGCCCCATGTCCCC 1182
Query 1180 TTCAAGCTGGTGTCCACCTACAAGAATTACTACTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGGGTGTC 1253
|||||||||||||||||||.|||||||||||||||.|||||||||||||||||.||||||||||||||.|||||
Sbjct 1183 TTCAAGCTGGTGTCCACCTTCAAGAATTACTACTCGTTGGTGCTGGACAGCGCCCTGGACCGCGAGAGAGTGTC 1256
Query 1254 GGCCTATGAGCTGGTGGTGACCGCGCGGGACGGGGGCTCGCCTCCGCTGTGGGCCACGGCCAGCGTGTCTGTGG 1327
||||||||||.|||||||.||||||||||||||||||||||||.|||||||||||||.||||||.|||||||||
Sbjct 1257 GGCCTATGAGTTGGTGGTAACCGCGCGGGACGGGGGCTCGCCTTCGCTGTGGGCCACCGCCAGCTTGTCTGTGG 1330
Query 1328 AGGTGGCCGACGTGAACGACAACGCGCCTGCGTTCGCGCAGTCCGAGTACACGGTGTTCGTGAAGGAGAACAAC 1401
||||||||||||||||||||||.||.||.||||||||||||.||||||||||||||||||||||||||||||||
Sbjct 1331 AGGTGGCCGACGTGAACGACAATGCTCCGGCGTTCGCGCAGCCCGAGTACACGGTGTTCGTGAAGGAGAACAAC 1404
Query 1402 CCGCCAGGCTGCCACATCTTCACGGTGTCTGCGTGGGACGCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTC 1475
|||||.|||||||||||||||||||||||||||.|.|||||||||||||||||||||||.||||||||||||||
Sbjct 1405 CCGCCGGGCTGCCACATCTTCACGGTGTCTGCGCGAGACGCGGACGCGCAGGAGAACGCGCTGGTGTCCTACTC 1478
Query 1476 TCTGGTGGAGCGGCGGTTGGGCGAGCGCTCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGT 1549
.||.||||||||||||.||||||||||||||||||||||||||.|.|||||||||.||||||||||||||||||
Sbjct 1479 GCTTGTGGAGCGGCGGGTGGGCGAGCGCTCGCTGTCGAGCTACATTTCGGTGCACACGGAGAGCGGCAAGGTGT 1552
Query 1550 ACGCGCTGCAGCCGCTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAG------------------------ 1599
|||||||||||||||||||||||||||||||.||||||||.|||||||||
Sbjct 1553 ACGCGCTGCAGCCGCTGGACCACGAGGAGCTAGAGCTGCTGCAGTTCCAGGTGAGCGCGCGCGACGCGGGCGTG 1626
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1627 CCGCCTCTGGGCAGCAACGTGACGCTGCAGGTGTTCGTGCTGGACGAGAATGACAACGCGCCGGCACTGCTGGA 1700
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1701 GCCTCGGGTGGGTGGCACTGGTGGCGCAGCGAGCAAGCTGGTGCCGCGGTCTGTGGGCGCGGGCCACGTGGTAG 1774
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1775 CGAAGGTGCGCGCAGTGGACGCCGACTCGGGCTACAACGCGTGGCTTTCGTATGAGCTGCAGCCAGCTGCAAGC 1848
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1849 AGCCCTCGCATCCCGTTCCGCGTGGGGCTGTACACGGGCGAGATCAGCACCACTCGTGTCCTGGACGAAGCGGA 1922
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1923 CTCTCCGCGCCACCGTCTGCTGGTCCTGGTGAAGGATCATGGTGAACCTGCGCTGACCGCCACGGCCACGGTTC 1996
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 1997 TGGTGTCGCTGGTGGAGAGCGGCCAGGCTCCAAAAGCGTCATCGAGGCAGTCGGCTGGCGTTTTGGGTCCGGAA 2070
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2071 GCGGCGCTGGTGGATGTCAACGTGTACCTGATCATCGCCATCTGCGCGGTATCCAGCCTGCTGGTGCTCACGCT 2144
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2145 GCTGCTGTACACTGCGCTGCGGTGCTCAGCACTGCCCACTGAGGGCGGGTGCCGGGCGGGCAAGCCCACTCTGG 2218
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2219 TGTGCTCCAGTGCGGTGGGGAGCTGGTCATACTCGCAACAACAGCCGCAGAGGGTGTGCTCTGGTGAGGGGCCA 2292
Query 1600 -------------------------------------------------------------------------- 1599
Sbjct 2293 CCGAAGACGGACCTCATGGCCTTCAGCCCCTGCCTTCCTCCTGATCTGGGATCAGTTGATGTAGGCGAAGAGCA 2366
Query 1600 ----------------------------CCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAG 1645
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2367 AGATTTAAATGTTGATCATGGCCTCAAACCACGACAGCCCAACCCTGACTGGCGTTACTCTGCCTCCCTGAGAG 2440
Query 1646 CAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAG 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2441 CAGGCATGCACAGCTCTGTGCACCTAGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAG 2514
Query 1720 TGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAA 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2515 TGGCCAACAGTATCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTCAA 2588
Query 1794 CAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAAT 1867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2589 CAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGTGAGTTGCCCGACAAAT 2662
Query 1868 TCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGAC 1941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2663 TCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTACTAACAGCCAAATTGACAAAAGTGAC 2736
Query 1942 TTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAA 2015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2737 TTCATAACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAA 2810
Query 2016 AAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG 2055
||||||||||||||||||||||||||||||||||||||||
Sbjct 2811 AAAAGAGAAAGGGAACAGCACGACTGACAACAGTGACCAG 2850
