Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03798
- Subject:
- NM_001127359.1
- Aligned Length:
- 2256
- Identities:
- 1055
- Gaps:
- 1191
Alignment
Query 1 ATGGCGTCCAAAGTCACAGATGCTATAGTCTGGTATCAAAAGAAGATTGGAGCATATGATCAACAAATATGGGA 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCCAAAGTCACAGATGCTATAGTCTGGTATCAAAAGAAGATTGGAGCATATGATCAACAAATATGGGA 74
Query 75 AAAATCTGTTGAACAGAGAGAAATCAAGTTTATTAAACTGGGGCTAAGGAATAAACCAAAGAAAACAGCACATG 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AAAATCTGTTGAACAGAGAGAAATCAAGTTTATTAAACTGGGGCTAAGGAATAAACCAAAGAAAACAGCACATG 148
Query 149 TGAAACCAGACCTCATAGATGTTGATCTTGTAAGAGGGTCTGCATTTGCAAAGGCAAAGCCTGAAAGTCCTTGG 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TGAAACCAGACCTCATAGATGTTGATCTTGTAAGAGGGTCTGCATTTGCAAAGGCAAAGCCTGAAAGTCCTTGG 222
Query 223 ACTTCTCTGACCAGAAAGGGAATTGTTCGAGTTGTATTTTTCCCCTTTTTCTTCCGGTGGTGGTTACAAGTAAC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ACTTCTCTGACCAGAAAGGGAATTGTTCGAGTTGTATTTTTCCCCTTTTTCTTCCGGTGGTGGTTACAAGTAAC 296
Query 297 ATCAAAGGTCATCTTTTTCTGGCTTCTTGTCCTTTATCTTCTTCAAGTTGCTGCAATAGTATTATTCTGCTCCA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATCAAAGGTCATCTTTTTCTGGCTTCTTGTCCTTTATCTTCTTCAAGTTGCTGCAATAGTATTATTCTGCTCCA 370
Query 371 CTTCTAGCCCACACAGCATACCTCTGACAGAGGTGATTGGGCCGATATGGCTGATGCTGCTCCTGGGAACTGTG 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTTCTAGCCCACACAGCATACCTCTGACAGAGGTGATTGGGCCGATATGGCTGATGCTGCTCCTGGGAACTGTG 444
Query 445 CATTGCCAGATTGTTTCCACAAGAACACCCAAACCTCCTCTAAGTACAGGGGGTAAAAGAAGAAGGAAATTAAG 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CATTGCCAGATTGTTTCCACAAGAACACCCAAACCTCCTCTAAGTACAGGGGGTAAAAGAAGAAGGAAATTAAG 518
Query 519 AAAAGCAGCCCATTTGGAAGTACATAGGGAAGGAGATGGTTCTAGTACCACAGATAACACACAAGAGGGAGCAG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AAAAGCAGCCCATTTGGAAGTACATAGGGAAGGAGATGGTTCTAGTACCACAGATAACACACAAGAGGGAGCAG 592
Query 593 TTCAGAACCACGGTACAAGCACCTCTCACAGCGTTGGCACTGTCTTCAGAGATCTCTGGCATGCTGCTTTCTTT 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TTCAGAACCACGGTACAAGCACCTCTCACAGCGTTGGCACTGTCTTCAGAGATCTCTGGCATGCTGCTTTCTTT 666
Query 667 TTATCAGGATCAAAGAAAGCAAAGAATTCAATTGATAAATCAACTGAAACTGACAATGGCTATGTATCCCTTGA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTATCAGGATCAAAGAAAGCAAAGAATTCAATTGATAAATCAACTGAAACTGACAATGGCTATGTATCCCTTGA 740
Query 741 TGGGAAGAAGACTGTTAAAAGCGGTGAAGATGGAATACAAAACCATGAACCTCAGTGTGAAACTATTCGACCAG 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGGGAAGAAGACTGTTAAAAGCGGTGAAGATGGAATACAAAACCATGAACCTCAGTGTGAAACTATTCGACCAG 814
Query 815 AAGAGACAGCCTGGAACACAGGAACACTGAGGAATGGTCCTAGCAAAGATACCCAAAGGACAATAACAAATGTC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAGAGACAGCCTGGAACACAGGAACACTGAGGAATGGTCCTAGCAAAGATACCCAAAGGACAATAACAAATGTC 888
Query 889 TCTGATGAAGTCTCCAGTGAGGAAGGTCCTGAAACAGGATACTCATTACGTCGTCATGTGGACAGGACTTCTGA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCTGATGAAGTCTCCAGTGAGGAAGGTCCTGAAACAGGATACTCATTACGTCGTCATGTGGACAGGACTTCTGA 962
Query 963 AGGTGTTCTTCGGAATAGAAAGTCACACCATTATAAGAAACATTACCCTAATGAGGACGCCCCTAAATCGGGTA 1036
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||.| ||
Sbjct 963 AGGTGTTCTTCGGAATAGAAAGTCACACCATTATAAGAAACATTACCCTAATGAGG-------TATA-----TA 1024
Query 1037 CTAGTTGCAGCTCTCGCTGTTCAAGT---TCCAGACAGGATTCTGAGAGTGCAAGGCCAGAATCTGAAACAGAA 1107
|| ||| |..|.|||| |.||.|| |.|||
Sbjct 1025 CT--TTG----------TCCTTAAGTGTATACATAC-----------------------GTATC---------- 1053
Query 1108 GATGTGTTATGGGAAGACTTGTTACATTGTGCAGAATGCCATTCATCTTGTACCAGTGAGACAGATGTGGAAAA 1181
|.|.|||| .||||||
Sbjct 1054 --TATTTTAT--------ATGTTAC------------------------------------------------- 1068
Query 1182 TCATCAGATTAATCCATGTGTGAAAAAAGAATATAGAGATGACCCTTTTCATCAGAGTCATTTGCCCTGGCTCC 1255
Sbjct 1069 -------------------------------------------------------------------------- 1068
Query 1256 ATAGTTCCCACCCAGGATTAGAAAAAATAAGTGCTATAGTATGGGAAGGTAATGATTGTAAGAAAGCAGACATG 1329
Sbjct 1069 -------------------------------------------------------------------------- 1068
Query 1330 TCTGTACTTGAAATCAGTGGAATGATAATGAACAGAGTGAACAGCCATATACCAGGAATAGGATACCAGATTTT 1403
Sbjct 1069 -------------------------------------------------------------------------- 1068
Query 1404 TGGAAATGCAGTCTCTCTCATACTGGGTTTAACTCCATTTGTTTTCCGACTTTCTCAAGCTACAGACTTGGAAC 1477
Sbjct 1069 -------------------------------------------------------------------------- 1068
Query 1478 AACTCACAGCACATTCTGCTTCAGAACTTTATGTGATTGCATTTGGTTCTAATGAAGATGTCATAGTTCTTTCT 1551
Sbjct 1069 -------------------------------------------------------------------------- 1068
Query 1552 ATGGTTATAATAAGTTTTGTGGTTCGCGTGTCTCTTGTGTGGATTTTCTTTTTTTTGCTCTGTGTAGCAGAAAG 1625
Sbjct 1069 -------------------------------------------------------------------------- 1068
Query 1626 AACTTATAAACAGCGATTACTTTTTGCAAAACTCTTTGGACATTTAACATCTGCAAGGAGGGCTCGAAAATCTG 1699
Sbjct 1069 -------------------------------------------------------------------------- 1068
Query 1700 AGGTTCCTCATTTCCGGTTGAAGAAAGTACAGAATATAAAAATGTGGCTATCTCTCCGTTCCTATCTTAAGCGT 1773
Sbjct 1069 -------------------------------------------------------------------------- 1068
Query 1774 CGAGGTCCTCAGCGATCAGTTGATGTAATAGTTTCATCTGCTTTCTTATTGACTATCTCAGTTGTATTTATCTG 1847
Sbjct 1069 -------------------------------------------------------------------------- 1068
Query 1848 TTGTGCCCAGCTACTTCATGTACACGAGATCTTCCTTGATTGTCACTACAATTGGGAATTGGTAATCTGGTGCA 1921
Sbjct 1069 -------------------------------------------------------------------------- 1068
Query 1922 TCTCGTTAACACTTTTTCTCCTAAGATTTGTTACCCTTGGATCAGAAACAAGTAAAAAATATAGTAATACCTCA 1995
Sbjct 1069 -------------------------------------------------------------------------- 1068
Query 1996 ATATTACTTACTGAACAGATAAACCTCTACTTGAAAATGGAGAAAAAACCTAACAAAAAGGAGGAACTGACACT 2069
Sbjct 1069 -------------------------------------------------------------------------- 1068
Query 2070 AGTGAATAATGTTTTAAAACTGGCTACTAAACTGCTAAAGGAGTTGGACAGTCCTTTTAGATTATATGGGCTTA 2143
Sbjct 1069 -------------------------------------------------------------------------- 1068
Query 2144 CAATGAATCCGCTGCTTTATAACATCACCCAGGTTGTTATCCTGTCAGCTGTTTCTGGTGTTATCAGTGACTTG 2217
Sbjct 1069 -------------------------------------------------------------------------- 1068
Query 2218 CTTGGATTTAATTTAAAGCTATGGAAGATTAAGTCA 2253
Sbjct 1069 ------------------------------------ 1068
