Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03845
- Subject:
- XR_001737345.1
- Aligned Length:
- 4985
- Identities:
- 999
- Gaps:
- 3972
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCTCAGGCCCCTCCCAGGCTCTGAGTCTCCCGGCTGCAGGCGGATGGATGGGGCTTCTTCAGGCGGTGGCGGCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCAGCGAAGGTGGCGGCGGCAGCAGCGGCAGCGGCTATGGTGTGGTCGCTCGATTCTCCCAGTGCCTGGCTGAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTTCGGACGTGGTTAAGAACCAACTGGTTGAGGTTCAATGCAGACAAGACGGATGTGATGCTGAAAATGTGCAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGATGTTTATGTTTAATTGGTTTACAGACTGTCTGTGGACTCTTTTCCTGTCAAATTACCAGCCATCTGTTGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATCTTCAAGTCCAGAAATGGATGAAAGGTTTGACTGCCCATGAAAGTACAGGAGGTTCAGCAACATCAGATGAC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CATGAATTTGATCCATCAGCTGACATGCTGGTTCATGATTTTGATGATGAACGAACATTAGAAGAGGAAGAAAT 444
Query 1 ----------------------------------------------------------ATGCCAATTCATGAAC 16
||||||||||||||||
Sbjct 445 GATGGAAGGAGAAACAAACTTCAGCTCTGAAATAGAAGATCTTGCAAGGGAAGGCGACATGCCAATTCATGAAC 518
Query 17 TTCTCAGCCTTTATGGTTATGGTAGTACTGTTCGACTACCTGAAGAAGATGAGGAAGAGGAAGAAGAGGAAGAA 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TTCTCAGCCTTTATGGTTATGGTAGTACTGTTCGACTACCTGAAGAAGATGAGGAAGAGGAAGAAGAGGAAGAA 592
Query 91 GAAGGTGAAGATGATGAAGATGCTGATAATGATGACAACAGTGGCTGTAGTGGGGAAAATAAAGAGGAGAATAT 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GAAGGTGAAGATGATGAAGATGCTGATAATGATGACAACAGTGGCTGTAGTGGGGAAAATAAAGAGGAGAATAT 666
Query 165 AAAGGATTCATCAGGTCAGGAGGATGAAACTCAGTCTTCCAATGATGATCCATCACAATCTGTTGCTTCTCAAG 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAAGGATTCATCAGGTCAGGAGGATGAAACTCAGTCTTCCAATGATGATCCATCACAATCTGTTGCTTCTCAAG 740
Query 239 ATGCCCAGGAAATAATCCGCCCACGTCGATGTAAATATTTTGATACAAATAGTGAAGTAGAAGAAGAATCTGAA 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ATGCCCAGGAAATAATCCGCCCACGTCGATGTAAATATTTTGATACAAATAGTGAAGTAGAAGAAGAATCTGAA 814
Query 313 GAAGATGAAGATTATATTCCATCAGAAGACTGGAAAAAGGAGATTATGGTGGGCTCCATGTTTCAAGCAGAAAT 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GAAGATGAAGATTATATTCCATCAGAAGACTGGAAAAAGGAGATTATGGTGGGCTCCATGTTTCAAGCAGAAAT 888
Query 387 TCCAGTTGGCATTTGTAGATACAAAGAAAATGAAAAAGTATATGAAAATGATGATCAGCTCCTGTGGGACCCTG 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCCAGTTGGCATTTGTAGATACAAAGAAAATGAAAAAGTATATGAAAATGATGATCAGCTCCTGTGGGACCCTG 962
Query 461 AGTACTTACCAGAAGATAAAGTGATTATATTTCTTAAAGATGCATCTAGAAGAACAGGTGATGAGAAGGGTGTA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGTACTTACCAGAAGATAAAGTGATTATATTTCTTAAAGATGCATCTAGAAGAACAGGTGATGAGAAGGGTGTA 1036
Query 535 GAAGCAATTCCTGAAGGATCTCACATAAAAGACAATGAACAGGCTTTATATGAATTGGTTAAATGCAATTTTGA 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GAAGCAATTCCTGAAGGATCTCACATAAAAGACAATGAACAGGCTTTATATGAATTGGTTAAATGCAATTTTGA 1110
Query 609 TACAGAAGAAGCATTGAGAAGATTAAGATTTAATGTAAAAGCAGCTAGAGAGGAATTATCTGTTTGGACAGAGG 682
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TACAGAAGAAGCATTGAGAAGATTAAGATTTAATGTAAAAGCAGCTAGAG------------------------ 1160
Query 683 AAGAGTGTAGAAATTTTGAACAAGGGCTGAAGGCCTATGGAAAGGATTTTCATTTGATTCAGGCTAATAAAGTC 756
|||
Sbjct 1161 -----------------------------------------------------------------------GTC 1163
Query 757 CGAACAAGGTCAGTTGGTGAATGTGTAGCATTCTATTACATGTGGAAAAAATCTGAACGTTATGATTTCTTTGC 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 CGAACAAGGTCAGTTGGTGAATGTGTAGCATTCTATTACATGTGGAAAAAATCTGAACGTTATGATTTCTTTGC 1237
Query 831 TCAGCAAACACGATTTGGAAAGAAGAAATATAATCTTCATCCTGGTGTAACGGATTACATGGATCGTCTTCTAG 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 TCAGCAAACACGATTTGGAAAGAAGAAATATAATCTTCATCCTGGTGTAACGGATTACATGGATCGTCTTCTAG 1311
Query 905 ACGAAAGTGAAAGTGCTGCATCTAGTCGAGCACCATCCCCTCCCCCAACTGCATCAAACAGTAGTAACAGCCAG 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 ACGAAAGTGAAAGTGCTGCATCTAGTCGAGCACCATCCCCTCCCCCAACTGCATCAAACAGTAGTAACAGCCAG 1385
Query 979 TCTGAGAAAGAAGATGGCACTGTAAGCACTGCTAATCAAAATGGAGTGTCATCTAATGGACCAGG--------- 1043
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 TCTGAGAAAGAAGATGGCACTGTAAGCACTGCTAATCAAAATGGAGTGTCATCTAATGGACCAGGTGAAATATT 1459
Query 1044 ---CA------------------------TACTCCA--AATG--------------------------CTTCTT 1062
|| ||| .|| |||| ||||.|
Sbjct 1460 AAACAAAGAGGAAGTAAAAGTTGAAGGGTTAC-ACATTAATGGACCAACAGGTGGAAATAAGAAACCACTTCAT 1532
Query 1063 CCAGTTCAT------------TTTTCA-------------------------------GCC---ATCAGTTCAA 1090
.|||.| || ||.|.| ||| ||.|.|.|||
Sbjct 1533 GCAGAT-ATGGATACTAATGGTTATGAAACAGATAACCTTACCACTGACCCAAAACTTGCCCATATGACTGCAA 1605
Query 1091 GA---GCCAATGCCTTT--TTAAAA------------------------------------------------- 1110
|| |..||||..||| |.||||
Sbjct 1606 GAAATGAAAATGATTTTGATGAAAAAAGTGAGAGACCTGCCAAAAGGCGAAGGGTAAACAGCAATGGAAAAGAA 1679
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 1680 AGTCCAGGTTCTTCTGAATTTTTCCAAGAAGCAGTCTCACATGGGAAATTTGAAGAACTTGAAAACACAGATGA 1753
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 1754 CTAAATTTTAGACCTATTTTACTTTCTTTGGAGTAAATTCTGGTGTGACTAAAATTTTCAGGGTTGATGGGTTA 1827
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 1828 CCTTAAAAAGTTGATTTCCTTGAAGCAGTTTGAAAATTTGAATTGAGTCTTAACTTTAGGAAATGAGGTTTCAT 1901
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 1902 AATTCTGCCTTTTGCAGATTTTTTTACTTTAAAGCTGTCAGACTCTTTTAAGGGTATTTTAAAAATTAGTAAAT 1975
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 1976 TTGAATGAACTAAAGATATATCTCTACCTTCTCATTTGAATATCTTTAGTTCATTCAGATTTACTAATTTTGGT 2049
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 2050 AAATCTGAATGAACTAAAGATGTATCTGTACCTTCTCATTTGATGTATTAATCATAAAATTTCACTACAAGGTA 2123
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 2124 ATTTTTGCTTAGTTTGATGGATGAATGGGAAACTCAAGTCCAAATTTCTGCTTAATACCAATTTCTCTGAGTTT 2197
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 2198 CTTGAAATGTCTTTAAAACAGACATTTTTCTCACCAAACAGTTTGAGTATCTTTATTAAGGAAACCCTTACGAA 2271
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 2272 TCCTGAAAATTATGCTAGCATGATTTTTTTATATATAGAAGTTTAAAAATAAACCAGGTCAGGTTTGTATATGT 2345
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 2346 AAAATTGTTGACATCAATGATGTCTTTCCATATTCTTATCTGGGCTTAAGAAATACATTCTGTATTTTTCCAGA 2419
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 2420 TTCTTTGTAGCCTTTGAAAGATTTTTACAGTACATATGTCTTGACTGAGCTGTCCTTTCTTAATACAAAAGCGT 2493
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 2494 GTATAATTTTCTTAACTTGTACAGTTGGTAAACTTTTATGAGAGGAATTGTTATTCTGAGTCTGTCAGCTTTCA 2567
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 2568 TTTTATTTTGCTAAGGTTTTTCTAATGAATTTTTAAGTGTTTGTGTAGTAATTAAGTCATATTTCTTATCCAGG 2641
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 2642 TGGTTAAAGCATTCATAAAGGATTATAAAATTTTTTTTTTTTTTTTTTTTTTTAAATTTCTACTTAAGGGCAAG 2715
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 2716 TAATTTGAGAATTCTGAAATTAAGCATGATGCTTAGATTGCAGTTTGTTTTGCATTTGCTATAATTTTCAAAAT 2789
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 2790 TATTTTTGAAGCAAGACAAAAGTTTAATGTCAGCTTAAGTGCTTAAATATATCATGCTGACCAGAATCCTGTTA 2863
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 2864 TTTTTATATGCATCATAAAATTTCCCATTTCTGCATTAAATAAACAGAGGAGGGGGGTCAAGTGATACTTAGAT 2937
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 2938 ATTGGCACACACAAGGAACAACTGTTGGCAGGCAGTATCGATTTTATGAAGAGAAAGTGAAGTTTGAAAACTTT 3011
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 3012 TCAAACTTTTCTAGTTACAATCCAATTTTTCAGATTTGATAATGCTTTTCCAAAGTGAAAATAAGATACACAAT 3085
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 3086 AATCATTGCTCTGTGTGATTACAGATAGGATTATCCATCTGCATAGCCTTGTAAAAGTGCCATTTTATTTTTAG 3159
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 3160 TGCTAAATTCTTGTTAAATAATGTAGTTTTATATAGCTGATAGACCAACCTATATCCAAACTTTTATAAAATAT 3233
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 3234 TAATTATTCTTGTTTTTCTCACACAGGCATACTCCAAATGCTTCTTCCAGTTCATTTTTCAGCCATCAGTTCAA 3307
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 3308 GAGCCAATGCCTTTTTAAAATAAAGCTTCTGTGGTCTTGTTTTTAATGGCTCAACTGTCTGATGTAATTGAGTG 3381
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 3382 AAGGTTTGCACTGAGAAATTAGCATTCAGGCCTTACCCCCATGAAGTATTACTGTTAACATATGTTCGGACTGC 3455
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 3456 TTCCCTTCACCAATGTGAACAACTTTTTTTCCCAAACAGTGTTAAAAGCCACTTTGCAACACTTGACTTCATCT 3529
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 3530 TAATGTACATTCACTGTTGTTACATACATATCTAAGTAAATCAAAGTTTTGGGTGGAAGTGTTGAGAAGTATGA 3603
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 3604 GTTTTTTGTTGTTTTTGTTTTACTTAAAACTTTTAATTTATCCAGAATGGCAGTAGCTTTAGCAAGCAGATGGT 3677
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 3678 CACAATCTGTTTTCTAAATCATTTTTTATTAAATGAATCCAAAGTATCCTAGCTCTTTGTCAAAGATGGTCTGT 3751
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 3752 AGAAATGTTTTTAAAGATTAGGGATGCTGTACTTTTTGAATTGTTGCAGTGTTGGAGATGCCATTTTCACCTTT 3825
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 3826 TTAAAAAGATGCATTTTATTTGCAGGTTTGTGAAGTTCTTGCAAACTCTTACTACAGAAATGTTTTAAATACAT 3899
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 3900 TCTCAGGCATGTTTGCAAAAATATGGCACATGTATACATTTTAGGAAATGTTACTTTTGTTAATCTTTAAAAAA 3973
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 3974 TACACCTAATGAAAGACATTCCACTATTATGCGTAATGCTCAGCTTTTTGTAAAGAAATATTTAATTGTATTTT 4047
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 4048 GTGTTTATACAGGTATTTCACACAATAATTTGTTCTTAATGCAGCCACTATAACTTGATAAGTCATTGCACTAT 4121
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 4122 TTAAAAAGTTTTAGTAATATCATGAATTTAATTTGCTTAAGATTTAGTACATTTCAGAACTTTTGAACTTTTGA 4195
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 4196 CAAATTGCATTGGAAAAAGAAGTCTGTTAATAGTGATTTAGTCTCCCCGCCTCATTCCCACCCCCAACAAAGCA 4269
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 4270 CTATCATTTTCATTTGGAATGGGTATTTTCTGTTTCATGATGTATTTTCAAATAGAGTTCAGGATCTGCAATTC 4343
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 4344 AGTTCAACACAAGTTTGTTGAGCTTTAAAATGTATTTGAAGTAATATTTAAATAGGCATTTAAAATTTCAAATT 4417
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 4418 AGATGTTAAATTTATGCATAGTAATTTTGCACTGTAAAATAATTCCCTTCTCCCATTCCTTGTCTGCCATTCTG 4491
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 4492 AATATGCTTATTAAAATATTTTTTTAAACATATTTGCCTACATAATACTGTGTGAATATTTTCATTAGATTAAT 4565
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 4566 TCACTAAGATTTTATTAGAGATTGTTTGAATGATGCATGTTATTGACAAGGCAAATATATATATATACACAGTC 4639
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 4640 TGTTTCTTCTATTCCTAGACATATTGCACTACTTTTTCAGTGGTTCTTGGTCCCCTTTACCACATCTTGGGTGA 4713
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 4714 TGTATTTTTGTCTTCTTCCCCTTTGCCACAAGAGATCCTTTCAGTCCCTAGACCTCCATTCACTCTGTTTCTCT 4787
Query 1111 -------------------------------------------------------------------------- 1110
Sbjct 4788 TCTGCTGGATTATATAATTTAAAAATAATGTGTTCCCGTATTTTGTAGTGGAGTTCATATCACATTATGTTTTG 4861
Query 1111 --------------------------- 1110
Sbjct 4862 CAAAATAAAACTTGTTTTGTCACAATA 4888
