Nucleotide Global Alignment

Description

Query:
ccsbBroad304_03845
Subject:
XR_001737345.1
Aligned Length:
4985
Identities:
999
Gaps:
3972

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CCTCAGGCCCCTCCCAGGCTCTGAGTCTCCCGGCTGCAGGCGGATGGATGGGGCTTCTTCAGGCGGTGGCGGCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCAGCGAAGGTGGCGGCGGCAGCAGCGGCAGCGGCTATGGTGTGGTCGCTCGATTCTCCCAGTGCCTGGCTGAG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTTCGGACGTGGTTAAGAACCAACTGGTTGAGGTTCAATGCAGACAAGACGGATGTGATGCTGAAAATGTGCAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAGATGTTTATGTTTAATTGGTTTACAGACTGTCTGTGGACTCTTTTCCTGTCAAATTACCAGCCATCTGTTGA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ATCTTCAAGTCCAGAAATGGATGAAAGGTTTGACTGCCCATGAAAGTACAGGAGGTTCAGCAACATCAGATGAC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CATGAATTTGATCCATCAGCTGACATGCTGGTTCATGATTTTGATGATGAACGAACATTAGAAGAGGAAGAAAT  444

Query    1  ----------------------------------------------------------ATGCCAATTCATGAAC  16
                                                                      ||||||||||||||||
Sbjct  445  GATGGAAGGAGAAACAAACTTCAGCTCTGAAATAGAAGATCTTGCAAGGGAAGGCGACATGCCAATTCATGAAC  518

Query   17  TTCTCAGCCTTTATGGTTATGGTAGTACTGTTCGACTACCTGAAGAAGATGAGGAAGAGGAAGAAGAGGAAGAA  90
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TTCTCAGCCTTTATGGTTATGGTAGTACTGTTCGACTACCTGAAGAAGATGAGGAAGAGGAAGAAGAGGAAGAA  592

Query   91  GAAGGTGAAGATGATGAAGATGCTGATAATGATGACAACAGTGGCTGTAGTGGGGAAAATAAAGAGGAGAATAT  164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GAAGGTGAAGATGATGAAGATGCTGATAATGATGACAACAGTGGCTGTAGTGGGGAAAATAAAGAGGAGAATAT  666

Query  165  AAAGGATTCATCAGGTCAGGAGGATGAAACTCAGTCTTCCAATGATGATCCATCACAATCTGTTGCTTCTCAAG  238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AAAGGATTCATCAGGTCAGGAGGATGAAACTCAGTCTTCCAATGATGATCCATCACAATCTGTTGCTTCTCAAG  740

Query  239  ATGCCCAGGAAATAATCCGCCCACGTCGATGTAAATATTTTGATACAAATAGTGAAGTAGAAGAAGAATCTGAA  312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ATGCCCAGGAAATAATCCGCCCACGTCGATGTAAATATTTTGATACAAATAGTGAAGTAGAAGAAGAATCTGAA  814

Query  313  GAAGATGAAGATTATATTCCATCAGAAGACTGGAAAAAGGAGATTATGGTGGGCTCCATGTTTCAAGCAGAAAT  386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GAAGATGAAGATTATATTCCATCAGAAGACTGGAAAAAGGAGATTATGGTGGGCTCCATGTTTCAAGCAGAAAT  888

Query  387  TCCAGTTGGCATTTGTAGATACAAAGAAAATGAAAAAGTATATGAAAATGATGATCAGCTCCTGTGGGACCCTG  460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TCCAGTTGGCATTTGTAGATACAAAGAAAATGAAAAAGTATATGAAAATGATGATCAGCTCCTGTGGGACCCTG  962

Query  461  AGTACTTACCAGAAGATAAAGTGATTATATTTCTTAAAGATGCATCTAGAAGAACAGGTGATGAGAAGGGTGTA  534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AGTACTTACCAGAAGATAAAGTGATTATATTTCTTAAAGATGCATCTAGAAGAACAGGTGATGAGAAGGGTGTA  1036

Query  535  GAAGCAATTCCTGAAGGATCTCACATAAAAGACAATGAACAGGCTTTATATGAATTGGTTAAATGCAATTTTGA  608
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GAAGCAATTCCTGAAGGATCTCACATAAAAGACAATGAACAGGCTTTATATGAATTGGTTAAATGCAATTTTGA  1110

Query  609  TACAGAAGAAGCATTGAGAAGATTAAGATTTAATGTAAAAGCAGCTAGAGAGGAATTATCTGTTTGGACAGAGG  682
            ||||||||||||||||||||||||||||||||||||||||||||||||||                        
Sbjct 1111  TACAGAAGAAGCATTGAGAAGATTAAGATTTAATGTAAAAGCAGCTAGAG------------------------  1160

Query  683  AAGAGTGTAGAAATTTTGAACAAGGGCTGAAGGCCTATGGAAAGGATTTTCATTTGATTCAGGCTAATAAAGTC  756
                                                                                   |||
Sbjct 1161  -----------------------------------------------------------------------GTC  1163

Query  757  CGAACAAGGTCAGTTGGTGAATGTGTAGCATTCTATTACATGTGGAAAAAATCTGAACGTTATGATTTCTTTGC  830
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164  CGAACAAGGTCAGTTGGTGAATGTGTAGCATTCTATTACATGTGGAAAAAATCTGAACGTTATGATTTCTTTGC  1237

Query  831  TCAGCAAACACGATTTGGAAAGAAGAAATATAATCTTCATCCTGGTGTAACGGATTACATGGATCGTCTTCTAG  904
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238  TCAGCAAACACGATTTGGAAAGAAGAAATATAATCTTCATCCTGGTGTAACGGATTACATGGATCGTCTTCTAG  1311

Query  905  ACGAAAGTGAAAGTGCTGCATCTAGTCGAGCACCATCCCCTCCCCCAACTGCATCAAACAGTAGTAACAGCCAG  978
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312  ACGAAAGTGAAAGTGCTGCATCTAGTCGAGCACCATCCCCTCCCCCAACTGCATCAAACAGTAGTAACAGCCAG  1385

Query  979  TCTGAGAAAGAAGATGGCACTGTAAGCACTGCTAATCAAAATGGAGTGTCATCTAATGGACCAGG---------  1043
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct 1386  TCTGAGAAAGAAGATGGCACTGTAAGCACTGCTAATCAAAATGGAGTGTCATCTAATGGACCAGGTGAAATATT  1459

Query 1044  ---CA------------------------TACTCCA--AATG--------------------------CTTCTT  1062
               ||                        ||| .||  ||||                          ||||.|
Sbjct 1460  AAACAAAGAGGAAGTAAAAGTTGAAGGGTTAC-ACATTAATGGACCAACAGGTGGAAATAAGAAACCACTTCAT  1532

Query 1063  CCAGTTCAT------------TTTTCA-------------------------------GCC---ATCAGTTCAA  1090
            .|||.| ||            ||.|.|                               |||   ||.|.|.|||
Sbjct 1533  GCAGAT-ATGGATACTAATGGTTATGAAACAGATAACCTTACCACTGACCCAAAACTTGCCCATATGACTGCAA  1605

Query 1091  GA---GCCAATGCCTTT--TTAAAA-------------------------------------------------  1110
            ||   |..||||..|||  |.||||                                                 
Sbjct 1606  GAAATGAAAATGATTTTGATGAAAAAAGTGAGAGACCTGCCAAAAGGCGAAGGGTAAACAGCAATGGAAAAGAA  1679

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 1680  AGTCCAGGTTCTTCTGAATTTTTCCAAGAAGCAGTCTCACATGGGAAATTTGAAGAACTTGAAAACACAGATGA  1753

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 1754  CTAAATTTTAGACCTATTTTACTTTCTTTGGAGTAAATTCTGGTGTGACTAAAATTTTCAGGGTTGATGGGTTA  1827

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 1828  CCTTAAAAAGTTGATTTCCTTGAAGCAGTTTGAAAATTTGAATTGAGTCTTAACTTTAGGAAATGAGGTTTCAT  1901

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 1902  AATTCTGCCTTTTGCAGATTTTTTTACTTTAAAGCTGTCAGACTCTTTTAAGGGTATTTTAAAAATTAGTAAAT  1975

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 1976  TTGAATGAACTAAAGATATATCTCTACCTTCTCATTTGAATATCTTTAGTTCATTCAGATTTACTAATTTTGGT  2049

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2050  AAATCTGAATGAACTAAAGATGTATCTGTACCTTCTCATTTGATGTATTAATCATAAAATTTCACTACAAGGTA  2123

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2124  ATTTTTGCTTAGTTTGATGGATGAATGGGAAACTCAAGTCCAAATTTCTGCTTAATACCAATTTCTCTGAGTTT  2197

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2198  CTTGAAATGTCTTTAAAACAGACATTTTTCTCACCAAACAGTTTGAGTATCTTTATTAAGGAAACCCTTACGAA  2271

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2272  TCCTGAAAATTATGCTAGCATGATTTTTTTATATATAGAAGTTTAAAAATAAACCAGGTCAGGTTTGTATATGT  2345

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2346  AAAATTGTTGACATCAATGATGTCTTTCCATATTCTTATCTGGGCTTAAGAAATACATTCTGTATTTTTCCAGA  2419

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2420  TTCTTTGTAGCCTTTGAAAGATTTTTACAGTACATATGTCTTGACTGAGCTGTCCTTTCTTAATACAAAAGCGT  2493

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2494  GTATAATTTTCTTAACTTGTACAGTTGGTAAACTTTTATGAGAGGAATTGTTATTCTGAGTCTGTCAGCTTTCA  2567

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2568  TTTTATTTTGCTAAGGTTTTTCTAATGAATTTTTAAGTGTTTGTGTAGTAATTAAGTCATATTTCTTATCCAGG  2641

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2642  TGGTTAAAGCATTCATAAAGGATTATAAAATTTTTTTTTTTTTTTTTTTTTTTAAATTTCTACTTAAGGGCAAG  2715

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2716  TAATTTGAGAATTCTGAAATTAAGCATGATGCTTAGATTGCAGTTTGTTTTGCATTTGCTATAATTTTCAAAAT  2789

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2790  TATTTTTGAAGCAAGACAAAAGTTTAATGTCAGCTTAAGTGCTTAAATATATCATGCTGACCAGAATCCTGTTA  2863

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2864  TTTTTATATGCATCATAAAATTTCCCATTTCTGCATTAAATAAACAGAGGAGGGGGGTCAAGTGATACTTAGAT  2937

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 2938  ATTGGCACACACAAGGAACAACTGTTGGCAGGCAGTATCGATTTTATGAAGAGAAAGTGAAGTTTGAAAACTTT  3011

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3012  TCAAACTTTTCTAGTTACAATCCAATTTTTCAGATTTGATAATGCTTTTCCAAAGTGAAAATAAGATACACAAT  3085

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3086  AATCATTGCTCTGTGTGATTACAGATAGGATTATCCATCTGCATAGCCTTGTAAAAGTGCCATTTTATTTTTAG  3159

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3160  TGCTAAATTCTTGTTAAATAATGTAGTTTTATATAGCTGATAGACCAACCTATATCCAAACTTTTATAAAATAT  3233

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3234  TAATTATTCTTGTTTTTCTCACACAGGCATACTCCAAATGCTTCTTCCAGTTCATTTTTCAGCCATCAGTTCAA  3307

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3308  GAGCCAATGCCTTTTTAAAATAAAGCTTCTGTGGTCTTGTTTTTAATGGCTCAACTGTCTGATGTAATTGAGTG  3381

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3382  AAGGTTTGCACTGAGAAATTAGCATTCAGGCCTTACCCCCATGAAGTATTACTGTTAACATATGTTCGGACTGC  3455

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3456  TTCCCTTCACCAATGTGAACAACTTTTTTTCCCAAACAGTGTTAAAAGCCACTTTGCAACACTTGACTTCATCT  3529

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3530  TAATGTACATTCACTGTTGTTACATACATATCTAAGTAAATCAAAGTTTTGGGTGGAAGTGTTGAGAAGTATGA  3603

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3604  GTTTTTTGTTGTTTTTGTTTTACTTAAAACTTTTAATTTATCCAGAATGGCAGTAGCTTTAGCAAGCAGATGGT  3677

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3678  CACAATCTGTTTTCTAAATCATTTTTTATTAAATGAATCCAAAGTATCCTAGCTCTTTGTCAAAGATGGTCTGT  3751

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3752  AGAAATGTTTTTAAAGATTAGGGATGCTGTACTTTTTGAATTGTTGCAGTGTTGGAGATGCCATTTTCACCTTT  3825

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3826  TTAAAAAGATGCATTTTATTTGCAGGTTTGTGAAGTTCTTGCAAACTCTTACTACAGAAATGTTTTAAATACAT  3899

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3900  TCTCAGGCATGTTTGCAAAAATATGGCACATGTATACATTTTAGGAAATGTTACTTTTGTTAATCTTTAAAAAA  3973

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 3974  TACACCTAATGAAAGACATTCCACTATTATGCGTAATGCTCAGCTTTTTGTAAAGAAATATTTAATTGTATTTT  4047

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 4048  GTGTTTATACAGGTATTTCACACAATAATTTGTTCTTAATGCAGCCACTATAACTTGATAAGTCATTGCACTAT  4121

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 4122  TTAAAAAGTTTTAGTAATATCATGAATTTAATTTGCTTAAGATTTAGTACATTTCAGAACTTTTGAACTTTTGA  4195

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 4196  CAAATTGCATTGGAAAAAGAAGTCTGTTAATAGTGATTTAGTCTCCCCGCCTCATTCCCACCCCCAACAAAGCA  4269

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 4270  CTATCATTTTCATTTGGAATGGGTATTTTCTGTTTCATGATGTATTTTCAAATAGAGTTCAGGATCTGCAATTC  4343

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 4344  AGTTCAACACAAGTTTGTTGAGCTTTAAAATGTATTTGAAGTAATATTTAAATAGGCATTTAAAATTTCAAATT  4417

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 4418  AGATGTTAAATTTATGCATAGTAATTTTGCACTGTAAAATAATTCCCTTCTCCCATTCCTTGTCTGCCATTCTG  4491

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 4492  AATATGCTTATTAAAATATTTTTTTAAACATATTTGCCTACATAATACTGTGTGAATATTTTCATTAGATTAAT  4565

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 4566  TCACTAAGATTTTATTAGAGATTGTTTGAATGATGCATGTTATTGACAAGGCAAATATATATATATACACAGTC  4639

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 4640  TGTTTCTTCTATTCCTAGACATATTGCACTACTTTTTCAGTGGTTCTTGGTCCCCTTTACCACATCTTGGGTGA  4713

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 4714  TGTATTTTTGTCTTCTTCCCCTTTGCCACAAGAGATCCTTTCAGTCCCTAGACCTCCATTCACTCTGTTTCTCT  4787

Query 1111  --------------------------------------------------------------------------  1110
                                                                                      
Sbjct 4788  TCTGCTGGATTATATAATTTAAAAATAATGTGTTCCCGTATTTTGTAGTGGAGTTCATATCACATTATGTTTTG  4861

Query 1111  ---------------------------  1110
                                       
Sbjct 4862  CAAAATAAAACTTGTTTTGTCACAATA  4888

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