Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03863
- Subject:
- NR_072999.2
- Aligned Length:
- 4351
- Identities:
- 890
- Gaps:
- 3461
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGAAAGAAGTTTTGAGCCAACGAGGGGAAGAAAGGAGTTGGGGCAAAACAGGAGGCGTTTCCCTACCCGCATAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATCCCCGTCCCCGAGACACCCAATCCCCCCACCCCCAGCCTGCCCGCGCCTCCCGCCCCCAGCTCCTCGCCCTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGGACAGCTGGCAGCCCCGCGCGGACCAGACACAAAGCCGATCAATCCCGGAGGCGTGGGGGCGGAGGGACGAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCGCCGGGGCTTTCCCGGGCGCTGCTCTCCTCCTGCTGCCCCCTCGCTAGGACCCGGCGGACGCCTCGTCTGGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTTCACGCCCTCTAGCCCCTACCCCCACACCCCCAAAACAGAACAGACCCCCATCCCTGGGCTGGAGGACCCGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTCTTGGCAGCCAGCTGAGAAGGCGCCCCGGGGAGGGGGAAACTGACATCCCATCTAGAGCCGTCCCTCCTCTT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCTCCCCTCCCGACTCTCTGCTCCTTTCCCGCCCCAGAAGTTCAAGGGCCCCCGGCCTCCTGCGCTCCTGCCGC 518
Query 1 ----------------------------------------------ATGGCGAGGAGGAGCCGCCACCGCCTCC 28
||||||||||||||||||||||||||||
Sbjct 519 CGGGACCCTCGACCTCCTCAGAGCAGCCGGCTGCCGCCCCGGGAAGATGGCGAGGAGGAGCCGCCACCGCCTCC 592
Query 29 TCCTGCTGCTGCTGCGCTACCTGGTGGTCGCCCTGGGCTATCATAAGGCCTATGGGTTTTCTGCCCCAAAAGAC 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TCCTGCTGCTGCTGCGCTACCTGGTGGTCGCCCTGGGCTATCATAAGGCCTATGGGTTTTCTGCCCCAAAAGAC 666
Query 103 CAACAAGTAGTCACAGCAGTAGAGTACCAAGAGGCTATTTTAGCCTGCAAAACCCCAAAGAAGACTGTTTCCTC 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CAACAAGTAGTCACAGCAGTAGAGTACCAAGAGGCTATTTTAGCCTGCAAAACCCCAAAGAAGACTGTTTCCTC 740
Query 177 CAGATTAGAGTGGAAGAAACTGGGTCGGAGTGTCTCCTTTGTCTACTATCAACAGACTCTTCAAGGTGATTTTA 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CAGATTAGAGTGGAAGAAACTGGGTCGGAGTGTCTCCTTTGTCTACTATCAACAGACTCTTCAAGGTGATTTTA 814
Query 251 AAAATCGAGCTGAGATGATAGATTTCAATATCCGGATCAAAAATGTGACAAGAAGTGATGCGGGGAAATATCGT 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAAATCGAGCTGAGATGATAGATTTCAATATCCGGATCAAAAATGTGACAAGAAGTGATGCGGGGAAATATCGT 888
Query 325 TGTGAAGTTAGTGCCCCATCTGAGCAAGGCCAAAACCTGGAAGAGGATACAGTCACTCTGGAAGTATTAGTGGC 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TGTGAAGTTAGTGCCCCATCTGAGCAAGGCCAAAACCTGGAAGAGGATACAGTCACTCTGGAAGTATTAGTGGC 962
Query 399 TCCAGCAGTTCCATCATGTGAAGTACCCTCTTCTGCTCTGAGTGGAACTGTGGTAGAGCTACGATGTCAAGACA 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TCCAGCAGTTCCATCATGTGAAGTACCCTCTTCTGCTCTGAGTGGAACTGTGGTAGAGCTACGATGTCAAGACA 1036
Query 473 AAGAAGGGAATCCAGCTCCTGAATACACATGGTTTAAGGATGGCATCCGTTTGCTAGAAAATCCCAGACTTGGC 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AAGAAGGGAATCCAGCTCCTGAATACACATGGTTTAAGGATGGCATCCGTTTGCTAGAAAATCCCAGACTTGGC 1110
Query 547 TCCCAAAGCACCAACAGCTCATACACAATGAATACAAAAACTGGAACTCTGCAATTTAATACTGTTTCCAAACT 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TCCCAAAGCACCAACAGCTCATACACAATGAATACAAAAACTGGAACTCTGCAATTTAATACTGTTTCCAAACT 1184
Query 621 GGACACTGGAGAATATTCCTGTGAAGCCCGCAATTCTGTTGGATATCGCAGGTGTCCTGGGAAACGAATGCAAG 694
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GGACACTGGAGAATATTCCTGTGAAGCCCGCAATTCTGTTGGATATCGCAGGTGTCCTGGGAAACGAATGCAA- 1257
Query 695 TAGATGATCTCAACATAAGTGGCATCATAGCAGCCGTAGTAGTTGTGGCCTTAGTGATTTCCGTTTGTGGCCTT 768
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ---ATGATCTCAACATAAGTGGCATCATAGCAGCCGTAGTAGTTGTGGCCTTAGTGATTTCCGTTTGTGGCCTT 1328
Query 769 GGTGTATGCTATGCTCAGAGGAAAGGCTACTTTTCAAAAGAAACCTCCTTCCAGAAGAGTAATTCTTCATCTAA 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 GGTGTATGCTATGCTCAGAGGAAAGGCTACTTTTCAAAAGAAACCTCCTTCCAGAAGAGTAATTCTTCATCTAA 1402
Query 843 AGCCACGACAATGAGTGAAAATGATTTCAAGCACACAAAATCCTTTATAATT---------------------- 894
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 AGCCACGACAATGAGTGAAAATGATTTCAAGCACACAAAATCCTTTATAATTTAAAGACTCCACTTTAGAGATA 1476
Query 895 -------------------------------------------------------------------------- 894
Sbjct 1477 CACCAAAGCCACCGTTGTTACACAAGTTATTAAACTATTATAAAACTCTGCTTTGTCCGACATTTGCAAAGAGG 1550
Query 895 -------------------------------------------------------------------------- 894
Sbjct 1551 TACACGAGGAAATGGAATTGGTATTTCATTTTAATTTTCATGACTACTAACTCACCTGAACTTGCTATTTTAAA 1624
Query 895 -------------------------------------------------------------------------- 894
Sbjct 1625 CAAATAGTTCTGTCGACACCTAAAATATAATCTGGCTTCTTGTGTCTGGACTAAGTTAAAAGAATTAAAATACT 1698
Query 895 -------------------------------------------------------------------------- 894
Sbjct 1699 TTGTAATGTCCTGGGCTTTGGGAAATGTTAACCACGTCCTAACTTCTAGAGAACGTTACTAAAATATAACATAC 1772
Query 895 -------------------------------------------------------------------------- 894
Sbjct 1773 TGATTGTGAAGTCAATCCACAGGTCATGAAAATATAAATCAGACTCTGCACGAGAGTCTGATTTAGGGGGTCCA 1846
Query 895 -------------------------------------------------------------------------- 894
Sbjct 1847 ACAAATACTCTGACAGATGCAAAAGGAACCTCTGGTCTCATTTCTGCCAGAATCCTCTTTTCTCCCCTAATATC 1920
Query 895 -------------------------------------------------------------------------- 894
Sbjct 1921 ATCCTTATTCTGATGCTCGTTCATCACTAACACACCCACAGAAAGGAGGAAGCGGGATGGGTCTTATGCCCAAG 1994
Query 895 -------------------------------------------------------------------------- 894
Sbjct 1995 GATTTGCACTTTGTGTTTACTTCCATTCCTGGGAACTAAAAGCAACATCAAAAGAAATGCCTAATGGCTGGAGC 2068
Query 895 -------------------------------------------------------------------------- 894
Sbjct 2069 CCACAGGTGTGCACCACAGGATTTGCCTGGTGTGTGTCACTGATTTCTTCATTAAACGTAATTTAGATGGTCAA 2142
Query 895 -------------------------------------------------------------------------- 894
Sbjct 2143 ACACAAACCCAAGTGGCTTATTTCACCCCTACTGCTGCTTGCCACTGCTTCCTTCTTGTAAGATTTCTTTGAAG 2216
Query 895 -------------------------------------------------------------------------- 894
Sbjct 2217 AGGATCAGTGACTTTGACATCAGAACTCACCACTGGAGCCTACACAAGTTTGCAGATACCTTTCCCTGCAGGAG 2290
Query 895 -------------------------------------------------------------------------- 894
Sbjct 2291 TGGTGACTTCACATCTTTCTGTCTCTAAAAATTGTGCAGTGACATTCCGGGCCAAGTCCCTTAGTCAGGGGTTG 2364
Query 895 -------------------------------------------------------------------------- 894
Sbjct 2365 ACAATTCTGCTTTTGGACAAGGAGGGATGTGGAGGGAAGAAGTAATAGTCTACCAGGAAAATGAGACGAAAAAG 2438
Query 895 -------------------------------------------------------------------------- 894
Sbjct 2439 CTCAGTATGACTCCCTGCATCTGGTACCCCTCTTGAAACACAGTGGGCACATGAGCAATGGCTCAAACGAAAAG 2512
Query 895 -------------------------------------------------------------------------- 894
Sbjct 2513 TGGATCTAATGTGGGTTTCTCAACCGATGAACCACAAAAGCTTCCAGCTACTATTACAATGTGAAAATTCCAAT 2586
Query 895 -------------------------------------------------------------------------- 894
Sbjct 2587 GATCCGTTTACCAGAGCAATTAGACTATGTTAAAAATTCATATCATTTGTAACTTCTTTTAATTACTGAATTGA 2660
Query 895 -------------------------------------------------------------------------- 894
Sbjct 2661 TATTAAAAACAAAATATGGCTAGGGCATGTCCTATTCTTCTGGGCAAATGTGGATGAAAAGGTCACTTGCTACC 2734
Query 895 -------------------------------------------------------------------------- 894
Sbjct 2735 TTTGACAACTATGAACATGATGGTTAATCTTCTTTCTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCACTCTG 2808
Query 895 -------------------------------------------------------------------------- 894
Sbjct 2809 TCGCCCAGGCTGGAGTACAGTGGCACAATCTTGGCTCACTGCAACCTCCGCCTCCCCTCCGCCTCCCAGATTCA 2882
Query 895 -------------------------------------------------------------------------- 894
Sbjct 2883 AGCACTTCTCCTGCCTCAGCCTCCCAAGTAGCTGAGATTATAGGCGTGTACCACCACACCTGGCTAATTTTTGT 2956
Query 895 -------------------------------------------------------------------------- 894
Sbjct 2957 ATTTTAGTAGAGAAGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACCTCTGACCTCAAATGATCCACCCCCA 3030
Query 895 -------------------------------------------------------------------------- 894
Sbjct 3031 TCAGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTGCACTGGGCAGGTTAATCTTCTTTCAAAAGAGTC 3104
Query 895 -------------------------------------------------------------------------- 894
Sbjct 3105 TGCTCTTTCTACCCAATTGGCGAAGCAAATCCCCAGGATTCACCGAACAAATGGATTAAGCACCCACTGAGTGC 3178
Query 895 -------------------------------------------------------------------------- 894
Sbjct 3179 CTAGCATGTGCCTGGACACCAGGCCACCGGGAAGATGCTCCCCCTTTGACTTGTCTATGACATGCTATGTCTCT 3252
Query 895 -------------------------------------------------------------------------- 894
Sbjct 3253 CACCAGATCCCTTCCTGGAGGTCGGGCTTCTGTAACATGGCTCTGCCCCCAAAATAAAATTTTCACCACGAGTC 3326
Query 895 -------------------------------------------------------------------------- 894
Sbjct 3327 AGGGATCGGCAAACATTTTCTGTAAAGAGCCAGAAAGTAGATATTTTAAGTCATAAGGTCCCTGTTAACAACTA 3400
Query 895 -------------------------------------------------------------------------- 894
Sbjct 3401 CTTGACTCTGCCATTGTAGCACAAAGGCAGCCACAGACAAAACAAGCAAGTAGTCATGTCTGTGTTCCAATAAG 3474
Query 895 -------------------------------------------------------------------------- 894
Sbjct 3475 ACTTTATTTACAAAAACAGCAGGCACAGACAAGATTTGGCCCACAGGCATAGATTCCCAACTCATGGTGGTGAA 3548
Query 895 -------------------------------------------------------------------------- 894
Sbjct 3549 GTACAGAAAAAAACACCTGTCTACAAGCTTTTGTAAGAAATCAGGCTAAATGTTACCTATGTTTTGGTTGGAAG 3622
Query 895 -------------------------------------------------------------------------- 894
Sbjct 3623 ATTTCTTTGGTTTGAGGAATGCTTTCCTCTTGCATTGGCATGCCAAGAGGATAGATGACTCTGAAAGACGCCTC 3696
Query 895 -------------------------------------------------------------------------- 894
Sbjct 3697 TTCAGACATACCTGTCATCACACAAGATCAACTTCTTCAGTTTAAATGACACAAATCCATATTGTGGAAGGAAA 3770
Query 895 -------------------------------------------------------------------------- 894
Sbjct 3771 ATATGTAGTGCCTTAGCTTCACTAATAGTTGTAAAACTTCTTTTTAAGACATCAAAGGCTAGAGGATTCATTTT 3844
Query 895 -------------------------------------------------------------------------- 894
Sbjct 3845 ATGCAGTGCGAACATCTAATAACACTCTCTGTGTCAAATATATATTGTACATTACCTTAAACTATTGTAATAGC 3918
Query 895 -------------------------------------------------------------------------- 894
Sbjct 3919 TAGGTAAAAATCCTTGTATAAAAGAATGTTTTCCCCCACACAAAGGGCAGAGTATTGAGCACTAATTTCCTATT 3992
Query 895 -------------------------------------------------------------------------- 894
Sbjct 3993 AAAAGTATATATATGTATCTGTGGGTCACTGGTGTCCAGACTTGTATTTGCATTTGTGTTTACTTGAGGAACTT 4066
Query 895 -------------------------------------------------------------------------- 894
Sbjct 4067 GAACACTAACAACTGGTAAAATCCCATTGTAATTCTTACAGCATTTTGACTTTATTTTCCTGCAGTGAATTGTG 4140
Query 895 -------------------------------------------------------------------------- 894
Sbjct 4141 TTGTGTAAAGATTAGGGCTTTAAAATCTTATTAGCAAGCTTTGTTTTGTTTTAATTATTGTTGCTGTTGTAACT 4214
Query 895 -------------------------------------------------------------------------- 894
Sbjct 4215 AGATTTAATTTATTTTTAGTTGGAGGTTTGACCTAAGTCTGGACCAATTGATTGCTTTTCAATACAACTTTGCA 4288
Query 895 ----------------------------------------------------------- 894
Sbjct 4289 AAGAACTTCCTTTTTCCACAGGTGGCTTTGTTCGATTAAAGTCTACACTAATAAAAATA 4347
