Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03868
- Subject:
- XM_006516169.3
- Aligned Length:
- 2529
- Identities:
- 1771
- Gaps:
- 627
Alignment
Query 1 ATGTCTTTTCCACCTCATTTGAATCGCCCTCCCATGGGAATCCCAGCACTCCCACCAGGGATCCCACCCCCGCA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GTTTCCAGGATTTCCTCCACCTGTACCTCCAGGGACCCCAATGATTCCTGTACCAATGAGCATTATGGCTCCTG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CTCCAACTGTCTTAGTACCCACTGTGTCTATGGTTGGAAAGCATTTGGGCGCAAGAAAGGATCATCCAGGCTTA 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 AAGGCTAAAGAAAATGATGAAAATTGTGGTCCTACTACCACTGTTTTTGTTGGCAACATTTCCGAGAAAGCTTC 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 AGACATGCTTATAAGACAACTCTTAGCTAAATGTGGTTTGGTTTTGAGCTGGAAGAGAGTACAAGGTGCTTCCG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 GAAAGCTTCAAGCCTTCGGATTCTGTGAGTACAAGGAGCCAGAATCTACCCTCCGTGCACTCAGATTATTACAT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 GACCTGCAAATTGGAGAGAAAAAGCTACTCGTTAAAGTTGATGCAAAGACAAAGGCACAGCTGGATGAATGGAA 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 AGCAAAGAAGAAAGCTTCTAATGGGAATGCAAGGCCAGAAACTGTCACTAATGACGATGAAGAAGCCTTGGATG 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 AAGAAACAAAGAGGAGAGATCAGATGATTAAAGGGGCTATTGAAGTTTTAATTCGTGAATACTCCAGTGAGCTA 666
||||||||||||||.||||||||||||||.||.|||||.||||||||.|||
Sbjct 1 -----------------------ATGATTAAAGGGGCCATTGAAGTTTTAATCCGAGAATATTCCAGTGAACTA 51
Query 667 AATGCCCCCTCACAGGAATCTGATTCTCACCCCAGGAAGAAGAAGAAGGAAAAGAAGGAGGACATTTTCCGCAG 740
|||||||||||||||||.|||||.|||||||||||.||||||||.||||||||||||||||||||||||||.||
Sbjct 52 AATGCCCCCTCACAGGAGTCTGACTCTCACCCCAGAAAGAAGAAAAAGGAAAAGAAGGAGGACATTTTCCGTAG 125
Query 741 ATTTCCAGTGGCCCCACTGATCCCTTATCCACTCATCACTAAGGAGGATATAAATGCTATAGAAATGGAAGAAG 814
||||||||||||||||.||||||||||.|||||||||||.||||||||||||||||||||.|||||||||||||
Sbjct 126 ATTTCCAGTGGCCCCATTGATCCCTTACCCACTCATCACCAAGGAGGATATAAATGCTATTGAAATGGAAGAAG 199
Query 815 ACAAAAGAGACCTGATATCTCGAGAGATCAGCAAATTCAGAGACACACATAAGAAACTGGAAGAAGAGAAAGGC 888
||||||||||..|||||||.|||||||||||||||||||||||.|||||.||||||||||||||||||||||||
Sbjct 200 ACAAAAGAGATTTGATATCCCGAGAGATCAGCAAATTCAGAGATACACACAAGAAACTGGAAGAAGAGAAAGGC 273
Query 889 AAAAAGGAAAAAGAAAGACAGGAAATTGAGAAAGAACGGAGAGAAAGAGAGAGGGAGCGTGAAAGGGAACGAGA 962
|||||.||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 274 AAAAAAGAAAAAGAAAGACAGGAAATTGAGAAAGAACGGAGAGAAAGAGAGAGGGAACGTGAAAGGGAACGAGA 347
Query 963 AAGGCGAGAACGGGAACGAGAAAGGGAAAGAGAACGTGAACGAGAAAAGGAGAAAGAACGGGAGCGGGAACGAG 1036
|||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 348 AAGGCGAGAACGGGAACGAGAAAGGGAAAGAGAACGTGAACGAGAAAAGGAAAAAGAACGGGAGCGGGAACGAG 421
Query 1037 AACGGGATAGGGACCGTGACCGGACAAAAGAGAGAGACCGAGATCGGGATCGAGAGAGAGATCGTGACCGGGAT 1110
|||||||||||||.||||||||.|||||||||||||||||| |||||||||||||||||.|||||.|||
Sbjct 422 AACGGGATAGGGATCGTGACCGCACAAAAGAGAGAGACCGA------GATCGAGAGAGAGATCGGGACCGAGAT 489
Query 1111 AGAGAAAGGAGCTCAGATCGTAATAAGGATCGCAGTCGATCAAGAGAAAAAAGCAGAGATCGTGAAAGGGAACG 1184
.|||||.|||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 490 CGAGAACGGAGCTCAGATCGAAATAAGGATCGGAGTCGATCAAGAGAAAAAAGCAGAGATCGTGAAAGGGAACG 563
Query 1185 AGAGCGGGAAAGAGAGAGAGAGAGAGAACGAGAGCGAGAACGAGAACGGGAGCGAGAGAGAGAGCGAGAGAGGG 1258
.||||||||| |||||||||||||||||.||.|||||||||||.||||||||||||||.||.|||||.|
Sbjct 564 GGAGCGGGAA------AGAGAGAGAGAACGAGAACGGGAACGAGAACGAGAGCGAGAGAGAGAACGGGAGAGAG 631
Query 1259 AACGGGAGCGAGAAAGAGAAAAAGACAAAAAACGGGACCGAGAAGAAGATGAAGAAGATGCATACGAACGAAGA 1332
|||||||.||.||||||||.||||||||.|||.|.|||.|||||||.|||||||||||||||||.|||||||||
Sbjct 632 AACGGGAACGGGAAAGAGAGAAAGACAAGAAAAGAGACAGAGAAGAGGATGAAGAAGATGCATATGAACGAAGA 705
Query 1333 AAACTTGAAAGAAAACTCCGAGAGAAAGAAGCTGCTTATCAAGAGCGCCTTAAGAATTGGGAAATCAGAGAACG 1406
|||||.|||.|||||||.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 AAACTCGAACGAAAACTGCGAGAGAAAGAGGCTGCTTATCAAGAGCGCCTTAAGAATTGGGAAATCAGAGAACG 779
Query 1407 AAAGAAAACCCGGGAATATGAGAAAGAAGCTGAAAGAGAAGAAGAAAGAAGAAGAGAAATGGCCAAAGAAGCTA 1480
|||||||||..|||||||||||||.||.||.||||||||||||||||||||||||||||||||.||.||.||||
Sbjct 780 AAAGAAAACTAGGGAATATGAGAAGGAGGCAGAAAGAGAAGAAGAAAGAAGAAGAGAAATGGCTAAGGAGGCTA 853
Query 1481 AACGACTAAAAGAATTCTTAGAAGACTATGATGATGATAGAGATGACCCCAAATATTACAGAGGAAGTGCTCTT 1554
|||||||||||||||||.|||||||.|||||||||||||||||||||||.||.||.|||||.||.|||||||||
Sbjct 854 AACGACTAAAAGAATTCCTAGAAGATTATGATGATGATAGAGATGACCCGAAGTACTACAGGGGTAGTGCTCTT 927
Query 1555 CAGAAAAGGTTGCGTGATAGAGAAAAGGAAATGGAAGCAGATGAACGAGATAGGAAGAGAGAGAAGGAGGAGCT 1628
||||||.|||||||||||||.|||||.|||||||||||.|||||||||||.|||||||||||||||||.|||||
Sbjct 928 CAGAAACGGTTGCGTGATAGGGAAAAAGAAATGGAAGCTGATGAACGAGACAGGAAGAGAGAGAAGGAAGAGCT 1001
Query 1629 TGAGGAAATCAGGCAGCGCCTTCTGGCAGAAGGGCATCCAGATCCAGATGCAGAGCTCCAGAGGATGGAACAAG 1702
|||||||||||||||||||.|.||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TGAGGAAATCAGGCAGCGCTTACTGGCAGAAGGGCATCCAGATCCAGATGCAGAGCTCCAGAGGATGGAACAAG 1075
Query 1703 AGGCTGAGAGGCGCAGGCAGCCACAAATAAAGCAAGAGCCAGAATCAGAAGAGGAGGAAGAAGAAAAGCAAGAA 1776
|||||||||||||||||||.||.||||||||||||||.||||||||.||.||.||.||||||||||||||||||
Sbjct 1076 AGGCTGAGAGGCGCAGGCAACCTCAAATAAAGCAAGAACCAGAATCCGAGGAAGAAGAAGAAGAAAAGCAAGAA 1149
Query 1777 AAAGAAGAAAAACGAGAAGAACCCATGGAAGAGGAAGAGGAGCCAGAGCAAAAGCCTTGTCTGAAACCTACTCT 1850
|||||||||||||||||.||.||..||||||||||.||.||.||||||||||||||||||||.||.||.|||.|
Sbjct 1150 AAAGAAGAAAAACGAGAGGAGCCTGTGGAAGAGGAGGAAGAACCAGAGCAAAAGCCTTGTCTCAAGCCGACTTT 1223
Query 1851 GAGGCCCATCAGCTCTGCTCCATCTGTTTCCTCTGCCAGTGGCAATGCAACACCTAACACTCCTGGGGATGAGT 1924
|||.||||||||||||||.||||||||.|||||||||||||||||.|||||.||.|||||||||||||||||||
Sbjct 1224 GAGACCCATCAGCTCTGCCCCATCTGTGTCCTCTGCCAGTGGCAACGCAACCCCCAACACTCCTGGGGATGAGT 1297
Query 1925 CTCCCTGTGGTATTATTATTCCTCATGAAAACTCACCAGATCAACAGCAACCTGAGGAGCATAGGCCAAAAATA 1998
||||.||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1298 CTCCTTGTGGTATTATTATTCCTCATGAAAACTCACCAGATCAACAGCAGCCTGAGGAGCATAGGCCAAAAATA 1371
Query 1999 GGACTAAGTCTTAAACTGGGTGCTTCCAATAGTCCTGGTCAGCCTAATTCTGTGAAGAGAAAGAAACTACCTGT 2072
||||||||.||||||.||||||||||||||||||||||.||.||||||||.|||||||||||||||||||||||
Sbjct 1372 GGACTAAGCCTTAAATTGGGTGCTTCCAATAGTCCTGGCCAACCTAATTCAGTGAAGAGAAAGAAACTACCTGT 1445
Query 2073 AGATAGTGTCTTTAACAAATTTGAGGATGAAGACAGTGATGACGTACCCCGAAAAAGGAAACTGGTTCCCTTGG 2146
|||||||||||||||||||||.||||||||.|||||||||||.||.|||||||||||||||||.||||||.|||
Sbjct 1446 AGATAGTGTCTTTAACAAATTCGAGGATGAGGACAGTGATGATGTGCCCCGAAAAAGGAAACTCGTTCCCCTGG 1519
Query 2147 ATTATGGTGAAGATGATAAAAATGCAACCAAAGGCACTGTAAACACTGAAGAAAAGCGTAAACACATTAAGAGT 2220
|||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 1520 ATTATGGCGAAGATGATAAAAATGCCACCAAAGGCACTGTAAACACTGAAGAAAAGCGCAAACACATTAAGAGT 1593
Query 2221 CTCATTGAGAAAATCCCTACAGCCAAACCTGAGCTCTTCGCTTATCCCCTGGATTGGTCTATTGTGGATTCTAT 2294
||||||||||||||.||.||||||||||||||||||||.||||||||..|||||||||||||||||||||||||
Sbjct 1594 CTCATTGAGAAAATTCCCACAGCCAAACCTGAGCTCTTTGCTTATCCTTTGGATTGGTCTATTGTGGATTCTAT 1667
Query 2295 ACTGATGGAACGTCGAATTAGACCATGGATTAATAAGAAAATCATAGAATATATAGGTGAAGAAGAAGCTACAT 2368
||||||||||||..||||..|.||||||||.||||||||||||||.|||||.||||||||||||||||||||||
Sbjct 1668 ACTGATGGAACGAAGAATCCGGCCATGGATCAATAAGAAAATCATCGAATACATAGGTGAAGAAGAAGCTACAT 1741
Query 2369 TAGTTGATTTTGTTTGTTCTAAGGTTATGGCTCATAGTTCACCCCAGAGCATTTTAGATGATGTTGCCATGGTA 2442
||||||||||||||||.||||||||||||||.|||||||||||.||||||||||||||||||||||||||||||
Sbjct 1742 TAGTTGATTTTGTTTGCTCTAAGGTTATGGCACATAGTTCACCACAGAGCATTTTAGATGATGTTGCCATGGTA 1815
Query 2443 CTTGATGAAGAAGCAGAAGTTTTTATAGTCAAAATGTGGAGATTATTGATATATGAAACAGAAGCCAAGAAAAT 2516
||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1816 CTAGATGAAGAAGCAGAAGTTTTTATAGTCAAAATGTGGAGATTATTGATATATGAAACAGAAGCCAAGAAAAT 1889
Query 2517 TGGTCTTGTGAAG 2529
|||.|||||||||
Sbjct 1890 TGGCCTTGTGAAG 1902
