Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03879
- Subject:
- XR_388449.2
- Aligned Length:
- 2902
- Identities:
- 1619
- Gaps:
- 1041
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTGATTGAGGTCGGGAATAACAAAAACTGGAGACAGAGAGAAGACTAGACTTTAGGAGGAGATGGGTGGGTCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGGCAGGAAGGAGAACATGATGGCCTTGTCACGTGCTAAGATGTGTGTTATTCACTTGATTGTTGATGAGGTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACCTGGCATTTATGAATTGGTGCAGCTTTCCGATGCACGGTGTGATTCACGTGGGTGATTCACATGTAGGAATT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTGGTGTTCTGGTGCCCATTTCTGGTTTGGAAATAGGAGGAAAAGGCTCTAGGTGGAATCTGGGGAATGGGTGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACATGGGCTTCAGGACATTAGTCAAGCCACTGATCAGACACAAAGTAGTGTCCCAACACGCGTCACCTCCTCCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGTCTTCCACTTGCCACTTGGTCCCTCCTTCCTTATTCCCTCCCTCACCAATGGGCCCAGGCTTCTGATATCCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCTGGATGAGCCAGCCAGAGGGACAGGCTGTGTCAGAGGCATGCAAACAAGTATTAGGGTGCAAGTCGGTGGGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGGGATAGTACTCCCGAGCTACCAGCGGAGCTGCCGTGAGAGATCGAGAAAGAGAGAGAGCGCGCGCGAGCCCA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGAACGTCCTAGAGCTGGATCCTTCCTCAGGCCCACCCTTCCCCAGCCCCCAGCCTCCTGCCCAGGAGCTGACT 666
Query 1 ---------------------------------------------------------------ATGGCAGTGTA 11
||||||||.||
Sbjct 667 CTCTCTTACCTGTAGCGTACCTTCTCTAGGCTAGCTACTGGTTTGGGGTTATTGGGTCCAGTCATGGCAGTATA 740
Query 12 CCGCCTGTGTGTGACCACTGGTCCCTACCTGAGGGCCGGCACACTGGACAACATCTCTGTCACACTGGTGGGCA 85
.||.||||||||||||||||||.|||||||||.|||.||||||.||||.|||||||.||..|||.||||.||||
Sbjct 741 TCGGCTGTGTGTGACCACTGGTTCCTACCTGAAGGCTGGCACATTGGATAACATCTATGCTACATTGGTAGGCA 814
Query 86 CGTGTGGTGAAAGCCCCAAGCAGCGGCTAGATCGAATGGGCAGGGACTTCGCCCCTGGATCGGTACAGAAGTAC 159
|.||||||||||||||.||||||..|||.|||||..|.|||||||||||||||.||||||||||.||||||||.
Sbjct 815 CCTGTGGTGAAAGCCCTAAGCAGAAGCTGGATCGCGTAGGCAGGGACTTCGCCTCTGGATCGGTTCAGAAGTAT 888
Query 160 AAGGTGCGTTGCACAGCGGAGCTGGGTGAGCTCTTGCTGCTGCGTGTACACAAGGAGCGCTACGCTTTCTTCCG 233
||||||||.||...|||.||||||||||||.||||||||.||||..|||||||||||||||..|||||||||.|
Sbjct 889 AAGGTGCGCTGTGAAGCAGAGCTGGGTGAGATCTTGCTGTTGCGCTTACACAAGGAGCGCTTTGCTTTCTTCTG 962
Query 234 CAAGGACTCTTGGTACTGTAGCCGCATCTGTGTCACCGAACCGGATGG---TAGTGTATCCCACTTCCCCTGCT 304
|||||||.||||||||||.||.||.|||||||||||.|..||.||||| |..||| ||||||.|||||||
Sbjct 963 CAAGGACCCTTGGTACTGCAGTCGAATCTGTGTCACTGCCCCCGATGGCTCTGCTGT---CCACTTTCCCTGCT 1033
Query 305 ATCAGTGGATTGAAGGCTACTGCACCGTGGAGCTGAGGCCAGGAACAGCAAGAACTATTTGTCAGGACTCTCTT 378
|.||||||||.||.||||||||.||.|||||||||.|||||||||||||||||||.||.||||||||.||||||
Sbjct 1034 ACCAGTGGATCGATGGCTACTGTACTGTGGAGCTGCGGCCAGGAACAGCAAGAACCATCTGTCAGGATTCTCTT 1107
Query 379 CCCCTCCTCCTGGATCACAGGACACGGGAGCTCCGGGCCCGACAAGAATGCTACCGCTGGAAGATCTATGCCCC 452
||||||||.|||||.|||||||.||||||.||||..|||||.||||||||.||.|||||||||||||..|||||
Sbjct 1108 CCCCTCCTTCTGGACCACAGGAAACGGGAACTCCAAGCCCGCCAAGAATGTTATCGCTGGAAGATCTTCGCCCC 1181
Query 453 TGGCTTCCCCTGCATGGTAGACGTCAACAGCTTTCAGGAGATGGAGTCAGACAAGAAATTTGCCTTGACAAAGA 526
|||||||||..|.|||||.||.||||.||||||||||||||||||||||||.|||||||||||||||||.||||
Sbjct 1182 TGGCTTCCCTCGGATGGTGGATGTCAGCAGCTTTCAGGAGATGGAGTCAGATAAGAAATTTGCCTTGACCAAGA 1255
Query 527 CGACAACTTGTGTAGACCAGGGTGACAGCAGTGGGAATCGGTACCTGCCCGGCTTCCCCATGAAAATTGACATC 600
|...|.||||||.|||.||||.|||||.|..||||||.|||||||||||.|||||.||.|||||.|||||||||
Sbjct 1256 CAGTACCTTGTGCAGAACAGGATGACAACTCTGGGAACCGGTACCTGCCTGGCTTTCCTATGAAGATTGACATC 1329
Query 601 CCATCCCTGATGTACATGGAGCCCAATGTTCGATACTCAGCCACCAAGACGATCTCGCTGCTCTTCAATGCCAT 674
|||||.|||.||.|||||||.|||||..|||||||||||||||||||||||..|||.|||.|||||||.|||.|
Sbjct 1330 CCATCTCTGCTGCACATGGAACCCAACATTCGATACTCAGCCACCAAGACGGCCTCACTGATCTTCAACGCCCT 1403
Query 675 CCCTGCGTCCTTGGGAATGAAGCTTCGAGGGCTGTTGGATCGCAAGGGCTCCTGGAAGAAGCTGGATGACATGC 748
.|||||.|||||.||.||||||.|||||||.||..||||.|||||||||||||||||||.||||||.|||||.|
Sbjct 1404 TCCTGCATCCTTTGGCATGAAGATTCGAGGTCTCCTGGACCGCAAGGGCTCCTGGAAGAGGCTGGACGACATCC 1477
Query 749 AGAACATCTTCTGGTGCCATAAGACCTTCACGACAAAGTATGTCACAGAGCACTGGTGTGAAGATCA-CTTCTT 821
.||||||||||||||||||||||||||||||..||.||||.|||||.|||||.||||||||.|| || ||||||
Sbjct 1478 GGAACATCTTCTGGTGCCATAAGACCTTCACTTCAGAGTACGTCACCGAGCATTGGTGTGAGGA-CAGCTTCTT 1550
Query 822 TGGGTACCAGTACCTGAATGGTGTCAATCCCGTCATGCTCCACTGCATCTCTAGCTTGCCCAGCAAGCTGCCTG 895
|||||||||||||||||||||||||||.||.||||||||.||.|||.||||.||||||||||||||||||||||
Sbjct 1551 TGGGTACCAGTACCTGAATGGTGTCAACCCTGTCATGCTTCATTGCCTCTCCAGCTTGCCCAGCAAGCTGCCTG 1624
Query 896 TCACCAATGACATGGTGGCCCCCTTGCTGGGA-CAGGACACATGCCTGCAGACAGAGCTAGAGAGGGGGAACAT 968
|||||||||||||||||||.||.||||||||| |||| |||.|||||.||.||||||||||||||||||.||||
Sbjct 1625 TCACCAATGACATGGTGGCACCTTTGCTGGGACCAGG-CACCTGCCTACAAACAGAGCTAGAGAGGGGGCACAT 1697
Query 969 CTTCCTAGCGGACTACTGGATCCTGGCGGAGGCCCCCACCCACTGCCTAAACGGCCGCCAGCAGTACGTGGCCG 1042
||||||.|||||||||||||||||||||||||||||...|||.|||.|||||||.|.|||.||||||||..|.|
Sbjct 1698 CTTCCTGGCGGACTACTGGATCCTGGCGGAGGCCCCAGTCCATTGCATAAACGGTCTCCAACAGTACGTAACAG 1771
Query 1043 CCCCACTGTGCCTGCTGTGGCTCAGCCCCCAGGGGGCGCTGGTGCCCTTGGCCATCCAGCTCAGCCAGACCCCC 1116
|.||.||.||||||.|||||||||.|||.|||||||.||||.||||.|||||.|||||||||||||||||.||.
Sbjct 1772 CGCCCCTCTGCCTGTTGTGGCTCAACCCACAGGGGGTGCTGCTGCCATTGGCAATCCAGCTCAGCCAGACACCA 1845
Query 1117 GGGCCTGACAGCCCCATCTTCCTGCCCACTGACTCCGAATGGGACTGGCTGCTGGCCAAGACGTGGGTGCGCAA 1190
|||||.||.|||||||||||.|||||||||||.|.|||.|.|||||||||||||||||||||||||||||||||
Sbjct 1846 GGGCCAGAGAGCCCCATCTTTCTGCCCACTGATTGCGAGTTGGACTGGCTGCTGGCCAAGACGTGGGTGCGCAA 1919
Query 1191 CTCTGAGTTCCTGGTGCACGAAAACAACACGCACTTTCTGTGCACGCATTTGCTGTGCGAGGCCTTCGCCATGG 1264
|||||||||..||||||||||.|||||||||||.||||||||||||||||||||.||||||||||||.||||||
Sbjct 1920 CTCTGAGTTTTTGGTGCACGAGAACAACACGCATTTTCTGTGCACGCATTTGCTATGCGAGGCCTTCTCCATGG 1993
Query 1265 CCACGCTGCGCCAGCTGCCGCTCTGCCACCCCATCTACAAGCTCCTACTCCCCCACACTCGATACACGCTGCAG 1338
|.||.|||||.||||||||||||||.||.||..|||||||||||||.||.||.||.|||||.|||||||||||.
Sbjct 1994 CTACACTGCGTCAGCTGCCGCTCTGTCATCCAGTCTACAAGCTCCTGCTTCCTCATACTCGCTACACGCTGCAA 2067
Query 1339 GTGAACACCATCGCGAGGGCCACGCTGCTCAACCCCGAGGGCCTCGTGGACCAGGTCACGTCCATCGGGAGGCA 1412
||||||||||||||.||.|||||||||||||||||.||.||||||||||||.||||||||||||||||.|||||
Sbjct 2068 GTGAACACCATCGCAAGAGCCACGCTGCTCAACCCAGACGGCCTCGTGGACAAGGTCACGTCCATCGGTAGGCA 2141
Query 1413 AGGCCTCATCTACCTCATGAGCACGGGCCTGGCCCACTTCACCTACACCAATTTCTGCCTTCCGGACAGCCTGC 1486
.|||||||||||||||||||||||.||.||||||||||||||||||||..||||||||||.|||||.|||.|.|
Sbjct 2142 GGGCCTCATCTACCTCATGAGCACCGGGCTGGCCCACTTCACCTACACGGATTTCTGCCTACCGGATAGCATAC 2215
Query 1487 GGGCCCGCGGCGTCCTGGCTATCCCCAACTACCACTACCGAGACGACGGCCTGAAGATCTGGGCGGCCATTGAG 1560
||||.||.|||||||||.|.||.||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 2216 GGGCTCGTGGCGTCCTGACCATTCCCAACTACCACTACCGAGACGACGGCCTGAAGATCTGGGCGGCTATTGAG 2289
Query 1561 ----------------------------------AGCTTTGTCTCAGAAATCGTGGGCTACTATTATCCCAGTG 1600
||.|||||||||||.||.|||.|.||||||||||||||.|
Sbjct 2290 AGGTGTGGGGACCCTAAGGTCCTTCCAGCCACCAAGGTTTGTCTCAGAGATTGTGAGTTACTATTATCCCAGCG 2363
Query 1601 ACGCATCTGTGCAGCAGGATTCGGAGCTGCAGGCCTGGACTGGCGAGATTTTTGCTCAGGCGTTCCTGGGCCGG 1674
|.||.||||||||||||||.|..||.||||||||||||...||.|||||||||||||||||||||||.||.|||
Sbjct 2364 ATGCGTCTGTGCAGCAGGACTGTGAACTGCAGGCCTGGGTGGGTGAGATTTTTGCTCAGGCGTTCCTCGGACGG 2437
Query 1675 GAAAGCTCAGGTTTCCCAAGCCGGCTGTGCACCCCAGGAGAGATGGTGAAGTTCCTCACTGCAATCATCTTCAA 1748
|||||.|||||.||||||||||||||||||||||||||||||.|.|||||||..|||||.|||||||||||.||
Sbjct 2438 GAAAGTTCAGGCTTCCCAAGCCGGCTGTGCACCCCAGGAGAGCTCGTGAAGTATCTCACCGCAATCATCTTTAA 2511
Query 1749 TTGCTCTGCCCAGCACGCTGCTGTCAACAGTGGGCAGCATGACTTTGGGGCCTGGATGCCCAATGCTCCATCAT 1822
||||||.||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||.||.|||||||
Sbjct 2512 TTGCTCCGCCCAGCACGCTGCGGTCAATAGTGGGCAGCATGACTTTGGGGCCTGGATGCCCAACGCCCCATCAT 2585
Query 1823 CCATGAGGCAGCCCCCACCCCAGACCAAGGG-GACCACCACCCTGAAGACTTACCTAGACACCCTCCCTGAAGT 1895
|||||||||||||.||.||.||||||||||| || |||.||..|||
Sbjct 2586 CCATGAGGCAGCCTCCGCCTCAGACCAAGGGCGA-CACGACAATGA---------------------------- 2630
Query 1896 GAACATCAGCTGTAACAACCTCCTCCTCTTCTGGTTGGTTAGCCAAGAACCCAAGGACCAGAGGCCCCTGGGCA 1969
Sbjct 2631 -------------------------------------------------------------------------- 2630
Query 1970 CCTACCCAGATGAGCACTTCACAGAGGAGGCCCCGAGGCGGAGCATCGCCGCCTTCCAGAGCCGCCTGGCCCAG 2043
Sbjct 2631 -------------------------------------------------------------------------- 2630
Query 2044 ATCTCAAGGGACATCCAGGAGCGGAACCAGGGTCTGGCACTGCCCTACACCTACCTGGACCCTCCCCTCATTGA 2117
Sbjct 2631 -------------------------------------------------------------------------- 2630
Query 2118 GAACAGCGTCTCCATC 2133
Sbjct 2631 ---------------- 2630
