Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_03879
- Subject:
- XR_388452.3
- Aligned Length:
- 3396
- Identities:
- 1845
- Gaps:
- 1274
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCTTGGACACCTAGGGCATACAGGGTGCCTCCCACGGTTCAGCAGGCTGGCTGAGGGAGGACCTGGAGCGTAAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAATGTCACATGAGGGCCTCCAGATGCTGTCGGGCAGGCTTCCACTCACTTGGCAGGCAGGTCCTATCTCAAAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GAGTGATTGAGGTCGGGAATAACAAAAACTGGAGACAGAGAGAAGACTAGACTTTAGGAGGAGATGGGTGGGTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGTGGCAGGAAGGAGAACATGATGGCCTTGTCACGTGCTAAGATGTGTGTTATTCACTTGATTGTTGATGAGGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CACCTGGCATTTATGAATTGGTGCAGCTTTCCGATGCACGGTGTGATTCACGTGGGTGATTCACATGTAGGAAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCTGGTGTTCTGGTGCCCATTTCTGGTTTGGAAATAGGAGGAAAAGGCTCTAGGTGGAATCTGGGGAATGGGTG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AACATGGGCTTCAGGACATTAGTCAAGCCACTGATCAGACACAAAGTAGTGTCCCAACACGCGTCACCTCCTCC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CTGTCTTCCACTTGCCACTTGGTCCCTCCTTCCTTATTCCCTCCCTCACCAATGGGCCCAGGCTTCTGATATCC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATCTGGATGAGCCAGCCAGAGGGACAGGCTGTGTCAGAGGCATGCAAACAAGTATTAGGGTGCAAGTCGGTGGG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGGGGATAGTACTCCCGAGCTACCAGCGGAGCTGCCGTGAGAGATCGAGAAAGAGAGAGAGCGCGCGCGAGCCC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AGGAACGTCCTAGAGCTGGATCCTTCCTCAGGCCCACCCTTCCCCAGCCCCCAGCCTCCTGCCCAGGAGCTGAC 814
Query 1 ----------------------------------------------------------------ATGGCAGTGT 10
||||||||.|
Sbjct 815 TCTCTCTTACCTGTAGCGTACCTTCTCTAGGCTAGCTACTGGTTTGGGGTTATTGGGTCCAGTCATGGCAGTAT 888
Query 11 ACCGCCTGTGTGTGACCACTGGTCCCTACCTGAGGGCCGGCACACTGGACAACATCTCTGTCACACTGGTGGGC 84
|.||.||||||||||||||||||.|||||||||.|||.||||||.||||.|||||||.||..|||.||||.|||
Sbjct 889 ATCGGCTGTGTGTGACCACTGGTTCCTACCTGAAGGCTGGCACATTGGATAACATCTATGCTACATTGGTAGGC 962
Query 85 ACGTGTGGTGAAAGCCCCAAGCAGCGGCTAGATCGAATGGGCAGGGACTTCGCCCCTGGATCGGTACAGAAGTA 158
||.||||||||||||||.||||||..|||.|||||..|.|||||||||||||||.||||||||||.||||||||
Sbjct 963 ACCTGTGGTGAAAGCCCTAAGCAGAAGCTGGATCGCGTAGGCAGGGACTTCGCCTCTGGATCGGTTCAGAAGTA 1036
Query 159 CAAGGTGCGTTGCACAGCGGAGCTGGGTGAGCTCTTGCTGCTGCGTGTACACAAGGAGCGCTACGCTTTCTTCC 232
.||||||||.||...|||.||||||||||||.||||||||.||||..|||||||||||||||..|||||||||.
Sbjct 1037 TAAGGTGCGCTGTGAAGCAGAGCTGGGTGAGATCTTGCTGTTGCGCTTACACAAGGAGCGCTTTGCTTTCTTCT 1110
Query 233 GCAAGGACTCTTGGTACTGTAGCCGCATCTGTGTCACCGAACCGGATGG---TAGTGTATCCCACTTCCCCTGC 303
||||||||.||||||||||.||.||.|||||||||||.|..||.||||| |..||| ||||||.||||||
Sbjct 1111 GCAAGGACCCTTGGTACTGCAGTCGAATCTGTGTCACTGCCCCCGATGGCTCTGCTGT---CCACTTTCCCTGC 1181
Query 304 TATCAGTGGATTGAAGGCTACTGCACCGTGGAGCTGAGGCCAGGAACAGCAAGAACTATTTGTCAGGACTCTCT 377
||.||||||||.||.||||||||.||.|||||||||.|||||||||||||||||||.||.||||||||.|||||
Sbjct 1182 TACCAGTGGATCGATGGCTACTGTACTGTGGAGCTGCGGCCAGGAACAGCAAGAACCATCTGTCAGGATTCTCT 1255
Query 378 TCCCCTCCTCCTGGATCACAGGACACGGGAGCTCCGGGCCCGACAAGAATGCTACCGCTGGAAGATCTATGCCC 451
|||||||||.|||||.|||||||.||||||.||||..|||||.||||||||.||.|||||||||||||..||||
Sbjct 1256 TCCCCTCCTTCTGGACCACAGGAAACGGGAACTCCAAGCCCGCCAAGAATGTTATCGCTGGAAGATCTTCGCCC 1329
Query 452 CTGGCTTCCCCTGCATGGTAGACGTCAACAGCTTTCAGGAGATGGAGTCAGACAAGAAATTTGCCTTGACAAAG 525
||||||||||..|.|||||.||.||||.||||||||||||||||||||||||.|||||||||||||||||.|||
Sbjct 1330 CTGGCTTCCCTCGGATGGTGGATGTCAGCAGCTTTCAGGAGATGGAGTCAGATAAGAAATTTGCCTTGACCAAG 1403
Query 526 ACGACAACTTGTGTAGACCAGGGTGACAGCAGTGGGAATCGGTACCTGCCCGGCTTCCCCATGAAAATTGACAT 599
||...|.||||||.|||.||||.|||||.|..||||||.|||||||||||.|||||.||.|||||.||||||||
Sbjct 1404 ACAGTACCTTGTGCAGAACAGGATGACAACTCTGGGAACCGGTACCTGCCTGGCTTTCCTATGAAGATTGACAT 1477
Query 600 CCCATCCCTGATGTACATGGAGCCCAATGTTCGATACTCAGCCACCAAGACGATCTCGCTGCTCTTCAATGCCA 673
||||||.|||.||.|||||||.|||||..|||||||||||||||||||||||..|||.|||.|||||||.|||.
Sbjct 1478 CCCATCTCTGCTGCACATGGAACCCAACATTCGATACTCAGCCACCAAGACGGCCTCACTGATCTTCAACGCCC 1551
Query 674 TCCCTGCGTCCTTGGGAATGAAGCTTCGAGGGCTGTTGGATCGCAAGGGCTCCTGGAAGAAGCTGGATGACATG 747
|.|||||.|||||.||.||||||.|||||||.||..||||.|||||||||||||||||||.||||||.|||||.
Sbjct 1552 TTCCTGCATCCTTTGGCATGAAGATTCGAGGTCTCCTGGACCGCAAGGGCTCCTGGAAGAGGCTGGACGACATC 1625
Query 748 CAGAACATCTTCTGGTGCCATAAGACCTTCACGACAAAGTATGTCACAGAGCACTGGTGTGAAGATCA-CTTCT 820
|.||||||||||||||||||||||||||||||..||.||||.|||||.|||||.||||||||.|| || |||||
Sbjct 1626 CGGAACATCTTCTGGTGCCATAAGACCTTCACTTCAGAGTACGTCACCGAGCATTGGTGTGAGGA-CAGCTTCT 1698
Query 821 TTGGGTACCAGTACCTGAATGGTGTCAATCCCGTCATGCTCCACTGCATCTCTAGCTTGCCCAGCAAGCTGCCT 894
||||||||||||||||||||||||||||.||.||||||||.||.|||.||||.|||||||||||||||||||||
Sbjct 1699 TTGGGTACCAGTACCTGAATGGTGTCAACCCTGTCATGCTTCATTGCCTCTCCAGCTTGCCCAGCAAGCTGCCT 1772
Query 895 GTCACCAATGACATGGTGGCCCCCTTGCTGGGA-CAGGACACATGCCTGCAGACAGAGCTAGAGAGGGGGAACA 967
||||||||||||||||||||.||.||||||||| |||| |||.|||||.||.||||||||||||||||||.|||
Sbjct 1773 GTCACCAATGACATGGTGGCACCTTTGCTGGGACCAGG-CACCTGCCTACAAACAGAGCTAGAGAGGGGGCACA 1845
Query 968 TCTTCCTAGCGGACTACTGGATCCTGGCGGAGGCCCCCACCCACTGCCTAAACGGCCGCCAGCAGTACGTGGCC 1041
|||||||.|||||||||||||||||||||||||||||...|||.|||.|||||||.|.|||.||||||||..|.
Sbjct 1846 TCTTCCTGGCGGACTACTGGATCCTGGCGGAGGCCCCAGTCCATTGCATAAACGGTCTCCAACAGTACGTAACA 1919
Query 1042 GCCCCACTGTGCCTGCTGTGGCTCAGCCCCCAGGGGGCGCTGGTGCCCTTGGCCATCCAGCTCAGCCAGACCCC 1115
||.||.||.||||||.|||||||||.|||.|||||||.||||.||||.|||||.||| |||||||||.||
Sbjct 1920 GCGCCCCTCTGCCTGTTGTGGCTCAACCCACAGGGGGTGCTGCTGCCATTGGCAATC-----CAGCCAGACACC 1988
Query 1116 CGGGCCTGACAGCCCCATCTTCCTGCCCACTGACTCCGAATGGGACTGGCTGCTGGCCAAGACGTGGGTGCGCA 1189
.|||||.||.|||||||||||.|||||||||||.|.|||.|.||||||||||||||||||||||||||||||||
Sbjct 1989 AGGGCCAGAGAGCCCCATCTTTCTGCCCACTGATTGCGAGTTGGACTGGCTGCTGGCCAAGACGTGGGTGCGCA 2062
Query 1190 ACTCTGAGTTCCTGGTGCACGAAAACAACACGCACTTTCTGTGCACGCATTTGCTGTGCGAGGCCTTCGCCATG 1263
||||||||||..||||||||||.|||||||||||.||||||||||||||||||||.||||||||||||.|||||
Sbjct 2063 ACTCTGAGTTTTTGGTGCACGAGAACAACACGCATTTTCTGTGCACGCATTTGCTATGCGAGGCCTTCTCCATG 2136
Query 1264 GCCACGCTGCGCCAGCTGCCGCTCTGCCACCCCATCTACAAGCTCCTACTCCCCCACACTCGATACACGCTGCA 1337
||.||.|||||.||||||||||||||.||.||..|||||||||||||.||.||.||.|||||.|||||||||||
Sbjct 2137 GCTACACTGCGTCAGCTGCCGCTCTGTCATCCAGTCTACAAGCTCCTGCTTCCTCATACTCGCTACACGCTGCA 2210
Query 1338 GGTGAACACCATCGCGAGGGCCACGCTGCTCAACCCCGAGGGCCTCGTGGACCAGGTCACGTCCATCGGGAGGC 1411
.||||||||||||||.||.|||||||||||||||||.||.||||||||||||.||||||||||||||||.||||
Sbjct 2211 AGTGAACACCATCGCAAGAGCCACGCTGCTCAACCCAGACGGCCTCGTGGACAAGGTCACGTCCATCGGTAGGC 2284
Query 1412 AAGGCCTCATCTACCTCATGAGCACGGGCCTGGCCCACTTCACCTACACCAATTTCTGCCTTCCGGACAGCCTG 1485
|.|||||||||||||||||||||||.||.||||||||||||||||||||..||||||||||.|||||.|||.|.
Sbjct 2285 AGGGCCTCATCTACCTCATGAGCACCGGGCTGGCCCACTTCACCTACACGGATTTCTGCCTACCGGATAGCATA 2358
Query 1486 CGGGCCCGCGGCGTCCTGGCTATCCCCAACTACCACTACCGAGACGACGGCCTGAAGATCTGGGCGGCCATTGA 1559
|||||.||.|||||||||.|.||.||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 2359 CGGGCTCGTGGCGTCCTGACCATTCCCAACTACCACTACCGAGACGACGGCCTGAAGATCTGGGCGGCTATTGA 2432
Query 1560 GAGCTTTGTCTCAGAAATCGTGGGCTACTATTATCCCAGTGACGCATCTGTGCAGCAGGATTCGGAGCTGCAGG 1633
|||.|||||||||||.||.|||.|.||||||||||||||.||.||.||||||||||||||.|..||.|||||||
Sbjct 2433 GAGGTTTGTCTCAGAGATTGTGAGTTACTATTATCCCAGCGATGCGTCTGTGCAGCAGGACTGTGAACTGCAGG 2506
Query 1634 CCTGGACTGGCGAGATTTTTGCTCAGGCGTTCCTGGGCCGGGAAAGCTCAGGTTTCCCAAGCCGGCTGTGCACC 1707
|||||...||.|||||||||||||||||||||||.||.||||||||.|||||.|||||||||||||||||||||
Sbjct 2507 CCTGGGTGGGTGAGATTTTTGCTCAGGCGTTCCTCGGACGGGAAAGTTCAGGCTTCCCAAGCCGGCTGTGCACC 2580
Query 1708 CCAGGAGAGATGGTGAAGTTCCTCACTGCAATCATCTTCAATTGCTCTGCCCAGCACGCTGCTGTCAACAGTGG 1781
|||||||||.|.|||||||..|||||.|||||||||||.||||||||.||||||||||||||.|||||.|||||
Sbjct 2581 CCAGGAGAGCTCGTGAAGTATCTCACCGCAATCATCTTTAATTGCTCCGCCCAGCACGCTGCGGTCAATAGTGG 2654
Query 1782 GCAGCATGACTTTGGGGCCTGGATGCCCAATGCTCCATCATCCATGAGGCAGCCCCCACCCCAGACCAAGGG-G 1854
||||||||||||||||||||||||||||||.||.||||||||||||||||||||.||.||.||||||||||| |
Sbjct 2655 GCAGCATGACTTTGGGGCCTGGATGCCCAACGCCCCATCATCCATGAGGCAGCCTCCGCCTCAGACCAAGGGCG 2728
Query 1855 ACCACCACCCTGAAGACTTACCTAGACACCCTCCCTGAAGTGAACATCAGCTGTAACAACCTCCTCCTCTTCTG 1928
| |||.||..||||||.||||||||||||||||||.||.|||||||.||.|||||..|||||.|||||||||||
Sbjct 2729 A-CACGACAATGAAGAGTTACCTAGACACCCTCCCAGAGGTGAACACCACCTGTAGAAACCTTCTCCTCTTCTG 2801
Query 1929 GTTGGTTAGCCAAGAACCCAAGGACCAGAGGCCCCTGGGCACCTACCCAGATGAGCACTTCACAGAGGAGGCCC 2002
|.||||.||||||||.||.|||||||||||.||.||||||||||||||||||||.|||||||||||||||||||
Sbjct 2802 GCTGGTCAGCCAAGAGCCAAAGGACCAGAGACCTCTGGGCACCTACCCAGATGAACACTTCACAGAGGAGGCCC 2875
Query 2003 CGAGGCGGAGCATCGCCGCCTTCCAGAGCCGCCTGGCCCAGATCTCAAGGGACATCCAGGAGCGGAACCAGGGT 2076
|..|||.|||||||||.||||||||||.|.||||||||||||||||||.|||||||..||||||.||||||.|.
Sbjct 2876 CACGGCAGAGCATCGCAGCCTTCCAGAACTGCCTGGCCCAGATCTCAAAGGACATCAGGGAGCGCAACCAGAGC 2949
Query 2077 CTGGCACTGCCCTACACCTACCTGGACCCTCCCCTCATTGAGAACAGCGTCTCCATC----------------- 2133
||||||||||||||..|||||.||||.|||||.||||||||||||||.||.|||||.
Sbjct 2950 CTGGCACTGCCCTATGCCTACTTGGATCCTCCACTCATTGAGAACAGTGTTTCCATTTGAGTCCCACTTGGAGC 3023
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3024 CATCCCAGAGGAAAGGAAGTTACAACTAAGGGGAAGGCTAACTCCCTAGGGCCTTCTAGGCCTCTTTAATCTCA 3097
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3098 GTTTGGACCTTCTCCTCTGCCCATGGGACCACGATGGCCTTGACATTATATCAATGTGCCCTGAGCTGTGAGGG 3171
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3172 ACCAGTACAGCAGTGTTCAGGGTGAAAGCCGCTAACTAAAGTCAAATGCACAATAGAACCCATGCCCTTCTAAC 3245
Query 2134 -------------------------------------------------------------------------- 2133
Sbjct 3246 GTGTGGAATCCTCTCCCACATCAGGTTGCTCAGCTTGAGTTTCTGAGCTCTCTTTCCACATCCCAGTTAAACCC 3319
Query 2134 ------------------------------------------------------------------ 2133
Sbjct 3320 ACTCCCATCCTATTGTCTGTCTTTGAGCCCAGTGACTTCAATAAAAGCTAACGTATTTGGCTCTCA 3385
