Nucleotide Global Alignment

Description

Query:
ccsbBroad304_03880
Subject:
NR_045583.2
Aligned Length:
3767
Identities:
2130
Gaps:
1637

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGAAATAGCACACAACCACTGTGAGCTGTATGCGATTCAGAAACCAAGACCAAATTTTGCTCACTTTCATTAAT  74

Query    1  ---------------------ATGACATCTGGTTCTGTCTTCTTCTACATCTTAATTTTTGGAAAATATTTTTC  53
                                 |||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct   75  CAGTTGCTCAGATAGAAGGAAATGACATCTGGTTCTGTCTTCTTCTACATCTTAATTTTTGGAAAATATT----  144

Query   54  TCATGGGGGTGGACAGGATGTCAAGTGCTCCCTTGGCTATTTCCCCTGTGGGAACATCACAAAGTGCTTGCCTC  127
                                                                                      
Sbjct  145  --------------------------------------------------------------------------  144

Query  128  AGCTCCTGCACTGTAACGGTGTGGACGACTGCGGGAATCAGGCCGATGAGGACAACTGTGGAGACAACAATGGA  201
                                                                        ||||||||||||||
Sbjct  145  ------------------------------------------------------------GAGACAACAATGGA  158

Query  202  TGGTCTCTGCAATTTGACAAATATTTTGCCAGTTACTACAAAATGACTTCCCAATATCCTTTTGAGGCAGAAAC  275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  159  TGGTCTCTGCAATTTGACAAATATTTTGCCAGTTACTACAAAATGACTTCCCAATATCCTTTTGAGGCAGAAAC  232

Query  276  ACCTGAATGTT---------------------------------------------------------------  286
            |||||||||||                                                               
Sbjct  233  ACCTGAATGTTCTTTTCATTTCTTTCTTTTCATTACCCTCCTCTTCCTGGTCCCTCACTGTCATCATGCCTTAC  306

Query  287  ------------------TGGTCGGTTCTGTGCCAGTGCAATGTCTTTGCCAAGGTCTGGAGCTTGACTGTGAT  342
                              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  307  CACTTCCCCTTGATTCAGTGGTCGGTTCTGTGCCAGTGCAATGTCTTTGCCAAGGTCTGGAGCTTGACTGTGAT  380

Query  343  GAAACCAATTTACGAGCTGTTCCATCGGTTTCTTCAAATGTGACTGCAATGTCACTTCAGTGGAACTTAATAAG  416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  381  GAAACCAATTTACGAGCTGTTCCATCGGTTTCTTCAAATGTGACTGCAATGTCACTTCAGTGGAACTTAATAAG  454

Query  417  AAAGCTTCCTCCTGATTGCTTCAAGAATTATCATGATCTTCAGAAGCTGTACCTGCAAAACAATAAGATTACAT  490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  455  AAAGCTTCCTCCTGATTGCTTCAAGAATTATCATGATCTTCAGAAGCTGTACCTGCAAAACAATAAGATTACAT  528

Query  491  CCATCTCCATCTATGCTTTCAGAGGACTGAATAGCCTTACTAAACTGTATCTCAGTCATAACAGAATAACCTTC  564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  529  CCATCTCCATCTATGCTTTCAGAGGACTGAATAGCCTTACTAAACTGTATCTCAGTCATAACAGAATAACCTTC  602

Query  565  CTGAAGCCGGGTGTTTTTGAAGATCTTCACAGACTAGAATGGCTGATAATTGAAGATAATCACCTCAGTCGAAT  638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  603  CTGAAGCCGGGTGTTTTTGAAGATCTTCACAGACTAGAATGGCTGATAATTGAAGATAATCACCTCAGTCGAAT  676

Query  639  TTCCCCACCAACATTTTATGGACTAAATTCTCTTATTCTCTTAGTCCTGATGAATAACGTCCTCACCCGTTTAC  712
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  677  TTCCCCACCAACATTTTATGGACTAAATTCTCTTATTCTCTTAGTCCTGATGAATAACGTCCTCACCCGTTTAC  750

Query  713  CTGATAAACCTCTCTGTCAACACATGCCAAGACTACATTGGCTGGACCTTGAAGGCAACCATATCCATAATTTA  786
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  751  CTGATAAACCTCTCTGTCAACACATGCCAAGACTACATTGGCTGGACCTTGAAGGCAACCATATCCATAATTTA  824

Query  787  AGAAATTTGACTTTTATTTCCTGCAGTAATTTAACTGTTTTAGTGATGAGGAAAAACAAAATTAATCACTTAAA  860
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  825  AGAAATTTGACTTTTATTTCCTGCAGTAATTTAACTGTTTTAGTGATGAGGAAAAACAAAATTAATCACTTAAA  898

Query  861  TGAAAATACTTTTGCACCTCTCCAGAAACTGGATGAATTGGATTTAGGAAGTAATAAGATTGAAAATCTTCCAC  934
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  899  TGAAAATACTTTTGCACCTCTCCAGAAACTGGATGAATTGGATTTAGGAAGTAATAAGATTGAAAATCTTCCAC  972

Query  935  CGCTTATATTCAAGGACCTGAAGGAGCTGTCACAATTGAATCTTTCCTATAATCCAATCCAGAAAATTCAAGCA  1008
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  973  CGCTTATATTCAAGGACCTGAAGGAGCTGTCACAATTGAATCTTTCCTATAATCCAATCCAGAAAATTCAAGCA  1046

Query 1009  AACCAATTTGATTATCTTGTCAAACTCAAGTCTCTCAGCCTAGAAGGGATTGAAATTTCAAATATCCAACAAAG  1082
            |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||
Sbjct 1047  AACCAATTTGATTATCTTGTCAAACTCAAGTCTCT---CCTAGAAGGGATTGAAATTTCAAATATCCAACAAAG  1117

Query 1083  GATGTTTAGACCTCTTATGAATCTCTCTCACATATATTTTAAGAAATTCCAGTACTGTGGGTATGCACCACATG  1156
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118  GATGTTTAGACCTCTTATGAATCTCTCTCACATATATTTTAAGAAATTCCAGTACTGTGGGTATGCACCACATG  1191

Query 1157  TTCGCAGCTGTAAACCAAACACTGATGGAATTTCATCTCTAGAGAATCTCTTGGCAAGCATTATTCAGAGAGTA  1230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192  TTCGCAGCTGTAAACCAAACACTGATGGAATTTCATCTCTAGAGAATCTCTTGGCAAGCATTATTCAGAGAGTA  1265

Query 1231  TTTGTCTGGGTTGTATCTGCAGTTACCTGCTTTGGAAACATTTTTGTCATTTGCATGCGACCTTATATCAGGTC  1304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266  TTTGTCTGGGTTGTATCTGCAGTTACCTGCTTTGGAAACATTTTTGTCATTTGCATGCGACCTTATATCAGGTC  1339

Query 1305  TGAGAACAAGCTGTATGCCATGTCAATCATTTCTCTCTGCTGTGCCGACTGCTTAATGGGAATATATTTATTCG  1378
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1340  TGAGAACAAGCTGTATGCCATGTCAATCATTTCTCTCTGCTGTGCCGACTGCTTAATGGGAATATATTTATTCG  1413

Query 1379  TGATCGGAGGCTTTGACCTAAAGTTTCGTGGAGAATACAATAAGCATGCGCAGCTGTGGATGGAGAGTACTCAT  1452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1414  TGATCGGAGGCTTTGACCTAAAGTTTCGTGGAGAATACAATAAGCATGCGCAGCTGTGGATGGAGAGTACTCAT  1487

Query 1453  TGTCAGCTTGTAGGATCTTTGGCCATTCTGTCCACAGAAGTATCAGTTTTACTGTTAACATTTCTGACATTGGA  1526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1488  TGTCAGCTTGTAGGATCTTTGGCCATTCTGTCCACAGAAGTATCAGTTTTACTGTTAACATTTCTGACATTGGA  1561

Query 1527  AAAATACATCTGCATTGTCTATCCTTTTAGATGTGTGAGACCTGGAAAATGCAGAACAATTACAGTTCTGATTC  1600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562  AAAATACATCTGCATTGTCTATCCTTTTAGATGTGTGAGACCTGGAAAATGCAGAACAATTACAGTTCTGATTC  1635

Query 1601  TCATTTGGATTACTGGTTTTATAGTGGCTTTCATTCCATTGAGCAATAAGGAATTTTTCAAAAACTACTATGGC  1674
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636  TCATTTGGATTACTGGTTTTATAGTGGCTTTCATTCCATTGAGCAATAAGGAATTTTTCAAAAACTACTATGGC  1709

Query 1675  ACCAATGGAGTATGCTTCCCTCTTCATTCAGAAGATACAGAAAGTATTGGAGCCCAGATTTATTCAGTGGCAAT  1748
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1710  ACCAATGGAGTATGCTTCCCTCTTCATTCAGAAGATACAGAAAGTATTGGAGCCCAGATTTATTCAGTGGCAAT  1783

Query 1749  TTTTCTTGGTATTAATTTGGCCGCATTTATCATCATAGTTTTTTCCTATGGAAGCATGTTTTATAGTGTTCATC  1822
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784  TTTTCTTGGTATTAATTTGGCCGCATTTATCATCATAGTTTTTTCCTATGGAAGCATGTTTTATAGTGTTCATC  1857

Query 1823  AAAGTGCCATAACAGCAACTGAAATACGGAATCAAGTTAAAAAAGAGATGATCCTTGCCAAACGTTTTTTCTTT  1896
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858  AAAGTGCCATAACAGCAACTGAAATACGGAATCAAGTTAAAAAAGAGATGATCCTTGCCAAACGTTTTTTCTTT  1931

Query 1897  ATAGTATTTACTGATGCATTATGCTGGATACCCATTTTTGTAGTGAAATTTCTTTCACTGCTTCAGGTAGAAAT  1970
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1932  ATAGTATTTACTGATGCATTATGCTGGATACCCATTTTTGTAGTGAAATTTCTTTCACTGCTTCAGGTAGAAAT  2005

Query 1971  ACCAGGTACCATAACCTCTTGGGTAGTGATTTTTATTCTGCCCATTAACAGTGCTTTGAACCCAATTCTCTATA  2044
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2006  ACCAGGTACCATAACCTCTTGGGTAGTGATTTTTATTCTGCCCATTAACAGTGCTTTGAACCCAATTCTCTATA  2079

Query 2045  CTCTGACCACAAGACCATTTAAAGAAATGATTCATCGGTTTTGGTATAACTACAGACAAAGAAAATCTATGGAC  2118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2080  CTCTGACCACAAGACCATTTAAAGAAATGATTCATCGGTTTTGGTATAACTACAGACAAAGAAAATCTATGGAC  2153

Query 2119  AGCAAAGGTCAGAAAACATATGCTCCATCATTCATCTGGGTGGAAATGTGGCCACTGCAGGAGATGCCACCTGA  2192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2154  AGCAAAGGTCAGAAAACATATGCTCCATCATTCATCTGGGTGGAAATGTGGCCACTGCAGGAGATGCCACCTGA  2227

Query 2193  GTTAATGAAGCCGGACCTTTTCACATACCCCTGTGAAATGTCACTGATTTCTCAATCAACGAGACTCAATTCCT  2266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2228  GTTAATGAAGCCGGACCTTTTCACATACCCCTGTGAAATGTCACTGATTTCTCAATCAACGAGACTCAATTCCT  2301

Query 2267  ATTCA---------------------------------------------------------------------  2271
            |||||                                                                     
Sbjct 2302  ATTCATGACTGACTCTGAAATTCATTTCTTCGCAGAGAATACTGTGGGGGTGCTTCATGAGGGATTTACTGGTA  2375

Query 2272  --------------------------------------------------------------------------  2271
                                                                                      
Sbjct 2376  TGAAATGAATACCACAAAATTAATTTATAATAATAGCTAAGATAAATATTTTACAAGGACATGAGGAAAAATAA  2449

Query 2272  --------------------------------------------------------------------------  2271
                                                                                      
Sbjct 2450  AAATGACTAATGCTCTTACAAAGGGAAGTAATTATATCAATAATGTATATATATTAGTAGACATTTTGCATAAG  2523

Query 2272  --------------------------------------------------------------------------  2271
                                                                                      
Sbjct 2524  AAATTAAGAGAAATCTACTTCAGTAACATTCATTCATTTTTCTAACATGCATTTATTGAGTACCCACTACTATG  2597

Query 2272  --------------------------------------------------------------------------  2271
                                                                                      
Sbjct 2598  TGCATAGCATTGCAATATAGTCCTGGAAGTAGACAGTGCAGAACCTTTCAATCTGTAGATGGTGTTTAATGACA  2671

Query 2272  --------------------------------------------------------------------------  2271
                                                                                      
Sbjct 2672  AAAGACTATACAAAGTCCATCTGCAGTTCCTAGTTTAAAGTAGAGCTTTACCTGTCATGTGCATCAGCAAGAAT  2745

Query 2272  --------------------------------------------------------------------------  2271
                                                                                      
Sbjct 2746  CATAGGCACTTTTAAATAAAGGTTTAAAGTTTTGGAATACTCAGTGTATTTGCATCATAGAAAATGTCTGACTG  2819

Query 2272  --------------------------------------------------------------------------  2271
                                                                                      
Sbjct 2820  TTTGCAAAATAATATTCTGTTTTAAGAATCCATCTTACCTCTCTTTAAGTTTCCATACACTTGAGAGCCAACAC  2893

Query 2272  --------------------------------------------------------------------------  2271
                                                                                      
Sbjct 2894  AACATATTTATTACTAAAAAGATGCTTTGCTAGAAACTCAAAAACAGCACTTCTTTTGGCACTTCCTGCCCAGT  2967

Query 2272  --------------------------------------------------------------------------  2271
                                                                                      
Sbjct 2968  TTTCTCTTTGCTTTAAATGAACATCATCATATGGAATTGGAATAGGAGAGTATGAGTACGGCAGAGAAGTGGAT  3041

Query 2272  --------------------------------------------------------------------------  2271
                                                                                      
Sbjct 3042  CAGAAAAACTAGAATGAGGATAAACATTTACATTAGTGGAAACTCCTGAAATAAATCCTTGTATTGTCAGTTAA  3115

Query 2272  --------------------------------------------------------------------------  2271
                                                                                      
Sbjct 3116  CTGATTTTCAACAAGGATGCCAAGACAAAAAGGCTTTTCAACAAACCGTGCTGTTTTAAGAACAGACCTAAGTG  3189

Query 2272  --------------------------------------------------------------------------  2271
                                                                                      
Sbjct 3190  GTTTAATTCACCCACTTTAGATGGGTGAATGTTATGGTGTGTGAAATATCTCAGTAAAGCAGTTAAAAGGAAAA  3263

Query 2272  --------------------------------------------------------------------------  2271
                                                                                      
Sbjct 3264  AGAGCTGGAATGCACTGATTCAGGAACTTAATTTCAGGAAGGAAAGGTCTGTATGTACACATTTCACTTTAAGC  3337

Query 2272  --------------------------------------------------------------------------  2271
                                                                                      
Sbjct 3338  AGAAAATCTTTCTTCAAGAAATGACTTTACTTTCTCTTTGCACTGCCAGCACGTGAGATACTAACTTTTTAACT  3411

Query 2272  --------------------------------------------------------------------------  2271
                                                                                      
Sbjct 3412  AGTTGTTCTTCTCTAGTCTCTACGTTATTAGAATTTTTTGCTTTCATAATGTGAAACCTTTAAGCAGGAGAAGA  3485

Query 2272  --------------------------------------------------------------------------  2271
                                                                                      
Sbjct 3486  AAATGTTTTCAGATAGTTTCAAATACACCAAAAATGTTTGAAACACAAAAATACTGGAATCAAACCATAATGCA  3559

Query 2272  -------------------------------------------------------------------  2271
                                                                               
Sbjct 3560  CTTATTGAATATATAGTTGTATAGATTTGTTCTGAAAATAAATTATCTGAAATTTAACTATTAAAAA  3626

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