Construct: ORF ccsbBroad304_03880

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004573.1_s304c1, BRDN0000401533
Derived from:
ccsbBroadEn_03880
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RXFP1 (59350)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_03880
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 59350 RXFP1 relaxin family peptide rece... NM_021634.4 100% 100%
2 human 59350 RXFP1 relaxin family peptide rece... XM_017008518.2 99.8% 99.8% 1043_1044insCAG
3 human 59350 RXFP1 relaxin family peptide rece... XM_011532176.2 96.8% 96.8% 754_755ins72
4 human 59350 RXFP1 relaxin family peptide rece... NM_001253727.1 96.5% 96.4% 287_367del
5 human 59350 RXFP1 relaxin family peptide rece... XM_011532174.1 96.4% 96.3% 287_367del;1124_1125insCAG
6 human 59350 RXFP1 relaxin family peptide rece... NM_001253728.2 95.6% 95.5% 187_188ins99
7 human 59350 RXFP1 relaxin family peptide rece... NM_001253729.2 93.6% 93.5% 898_899ins144
8 human 59350 RXFP1 relaxin family peptide rece... XM_011532175.1 93.4% 93.3% 287_367del;835_836ins72
9 human 59350 RXFP1 relaxin family peptide rece... XM_017008517.1 93.3% 93.2% 287_367del;835_836ins72;1052_1053insCAG
10 human 59350 RXFP1 relaxin family peptide rece... NM_001363776.1 89.2% 89.2% 0_1ins243
11 human 59350 RXFP1 relaxin family peptide rece... XM_017008522.1 89.1% 89.1% 0_1ins243;800_801insCAG
12 human 59350 RXFP1 relaxin family peptide rece... XM_017008519.1 86.2% 86% 0_1ins243;44_124del
13 human 59350 RXFP1 relaxin family peptide rece... XM_017008520.1 86.2% 86% 0_1ins243;44_124del
14 human 59350 RXFP1 relaxin family peptide rece... NM_001253730.1 82.6% 82.6% 0_1ins390;653_654insCAG
15 human 59350 RXFP1 relaxin family peptide rece... NM_001253732.2 81.2% 79.1% (many diffs)
16 human 59350 RXFP1 relaxin family peptide rece... NM_001253733.1 78% 75.9% (many diffs)
17 human 59350 RXFP1 relaxin family peptide rece... XM_017008526.1 78% 75.9% (many diffs)
18 human 59350 RXFP1 relaxin family peptide rece... NR_045584.2 66.7% (many diffs)
19 human 59350 RXFP1 relaxin family peptide rece... NR_045581.2 61.2% 1_95del;282_305del;2391_3710del
20 human 59350 RXFP1 relaxin family peptide rece... NR_045580.2 60.7% 1_95del;282_334del;2420_3739del
21 human 59350 RXFP1 relaxin family peptide rece... NR_045583.2 56.5% (many diffs)
22 human 59350 RXFP1 relaxin family peptide rece... NR_045582.2 56.1% (many diffs)
23 human 59350 RXFP1 relaxin family peptide rece... NR_045579.2 49.7% (many diffs)
24 human 59350 RXFP1 relaxin family peptide rece... XM_017008523.2 49.6% 49.4% (many diffs)
25 human 59350 RXFP1 relaxin family peptide rece... XM_011532179.2 47.9% 47.5% (many diffs)
26 human 59350 RXFP1 relaxin family peptide rece... XM_017008524.2 46.5% 46.2% (many diffs)
27 human 59350 RXFP1 relaxin family peptide rece... XM_017008525.1 45.3% 44.9% (many diffs)
28 mouse 381489 Rxfp1 relaxin/insulin-like family... NM_212452.1 85.9% 85% (many diffs)
29 mouse 381489 Rxfp1 relaxin/insulin-like family... XM_006501629.2 85.7% 84.9% (many diffs)
30 mouse 381489 Rxfp1 relaxin/insulin-like family... XM_006501630.2 71.8% 71.8% (many diffs)
31 mouse 381489 Rxfp1 relaxin/insulin-like family... XR_375538.2 24.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2340
ORF length:
2271
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gacatctggt tctgtcttct tctacatctt aatttttgga aaatattttt
121ctcatggggg tggacaggat gtcaagtgct cccttggcta tttcccctgt gggaacatca
181caaagtgctt gcctcagctc ctgcactgta acggtgtgga cgactgcggg aatcaggccg
241atgaggacaa ctgtggagac aacaatggat ggtctctgca atttgacaaa tattttgcca
301gttactacaa aatgacttcc caatatcctt ttgaggcaga aacacctgaa tgtttggtcg
361gttctgtgcc agtgcaatgt ctttgccaag gtctggagct tgactgtgat gaaaccaatt
421tacgagctgt tccatcggtt tcttcaaatg tgactgcaat gtcacttcag tggaacttaa
481taagaaagct tcctcctgat tgcttcaaga attatcatga tcttcagaag ctgtacctgc
541aaaacaataa gattacatcc atctccatct atgctttcag aggactgaat agccttacta
601aactgtatct cagtcataac agaataacct tcctgaagcc gggtgttttt gaagatcttc
661acagactaga atggctgata attgaagata atcacctcag tcgaatttcc ccaccaacat
721tttatggact aaattctctt attctcttag tcctgatgaa taacgtcctc acccgtttac
781ctgataaacc tctctgtcaa cacatgccaa gactacattg gctggacctt gaaggcaacc
841atatccataa tttaagaaat ttgactttta tttcctgcag taatttaact gttttagtga
901tgaggaaaaa caaaattaat cacttaaatg aaaatacttt tgcacctctc cagaaactgg
961atgaattgga tttaggaagt aataagattg aaaatcttcc accgcttata ttcaaggacc
1021tgaaggagct gtcacaattg aatctttcct ataatccaat ccagaaaatt caagcaaacc
1081aatttgatta tcttgtcaaa ctcaagtctc tcagcctaga agggattgaa atttcaaata
1141tccaacaaag gatgtttaga cctcttatga atctctctca catatatttt aagaaattcc
1201agtactgtgg gtatgcacca catgttcgca gctgtaaacc aaacactgat ggaatttcat
1261ctctagagaa tctcttggca agcattattc agagagtatt tgtctgggtt gtatctgcag
1321ttacctgctt tggaaacatt tttgtcattt gcatgcgacc ttatatcagg tctgagaaca
1381agctgtatgc catgtcaatc atttctctct gctgtgccga ctgcttaatg ggaatatatt
1441tattcgtgat cggaggcttt gacctaaagt ttcgtggaga atacaataag catgcgcagc
1501tgtggatgga gagtactcat tgtcagcttg taggatcttt ggccattctg tccacagaag
1561tatcagtttt actgttaaca tttctgacat tggaaaaata catctgcatt gtctatcctt
1621ttagatgtgt gagacctgga aaatgcagaa caattacagt tctgattctc atttggatta
1681ctggttttat agtggctttc attccattga gcaataagga atttttcaaa aactactatg
1741gcaccaatgg agtatgcttc cctcttcatt cagaagatac agaaagtatt ggagcccaga
1801tttattcagt ggcaattttt cttggtatta atttggccgc atttatcatc atagtttttt
1861cctatggaag catgttttat agtgttcatc aaagtgccat aacagcaact gaaatacgga
1921atcaagttaa aaaagagatg atccttgcca aacgtttttt ctttatagta tttactgatg
1981cattatgctg gatacccatt tttgtagtga aatttctttc actgcttcag gtagaaatac
2041caggtaccat aacctcttgg gtagtgattt ttattctgcc cattaacagt gctttgaacc
2101caattctcta tactctgacc acaagaccat ttaaagaaat gattcatcgg ttttggtata
2161actacagaca aagaaaatct atggacagca aaggtcagaa aacatatgct ccatcattca
2221tctgggtgga aatgtggcca ctgcaggaga tgccacctga gttaatgaag ccggaccttt
2281tcacataccc ctgtgaaatg tcactgattt ctcaatcaac gagactcaat tcctattcat
2341tgccaacttt cttgtacaaa gtggttggta agcctatccc taaccctctc ctcggtctcg
2401attctacgta gtaatgagct agcgctaacc ggtggcgcgt taagtcgaca atcaacctct
2461ggatta

Download FASTA (ORF) (Full)

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