Nucleotide Global Alignment

Description

• Query: ccsbBroad304_03924
• Subject: XR_001742177.1
• Aligned Length: 1284
• Identities: 775
• Gaps: 485

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCACATCCAATGGGCATGCAGCGCGCGCAGAAGTCCGGGGCTGGCAAGCGCTTCCTGCGCAGCGCCTAGGCGAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTGGAGTTTGTGACGCTGTGATGGTCTAGAGGCTGGAGATTCAAGATCTGGGTGCCATCATTTTCTGGTTCTGT  148

Query    1  --ATGA------ATCAGGAGGATCTAGATCCGGATAGTACTACAGATGTGGGAGATGTTACAAATACTGAAGAA  66
              ||||      ..||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TGATGACCCTCTTCCAGGAGGATCTAGATCCGGATAGTACTACAGATGTGGGAGATGTTACAAATACTGAAGAA  222

Query   67  GAACTTATTAGAGAATGTGAAGAAATGTGGAAAGATATGGAAGAATGTCAGAATAAATTATCACTTATTGGAAC  140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GAACTTATTAGAGAATGTGAAGAAATGTGGAAAGATATGGAAGAATGTCAGAATAAATTATCACTTATTGGAAC  296

Query  141  TGAAACACTCACCGATTCAAATGCTCAGCTATCATTGTTAATTATGCAAGTAAAATGTTTAACCGCTGAACTCA  214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TGAAACACTCACCGATTCAAATGCTCAGCTATCATTGTTAATTATGCAAGTAAAATGTTTAACCGCTGAACTCA  370

Query  215  GTCAATGGCAGAAAAAAACACCTGAAACAATTCCCTTGACTGAAGACGTTCTCATAACATTAGGAAAAGAAGAG  288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GTCAATGGCAGAAAAAAACACCTGAAACAATTCCCTTGACTGAAGACGTTCTCATAACATTAGGAAAAGAAGAG  444

Query  289  TTCCAAAAGCTGAGACAAGATCTTGAAATGGTACTGTCCACTAAGGAGTCAAAGAATGAAAAGTTAAAGGAAGA  362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TTCCAAAAGCTGAGACAAGATCTTGAAATGGTACTGTCCACTAAGGAGTCAAAGAATGAAAAGTTAAAGGAAGA  518

Query  363  CTTAGAAAGGGAACAACGGTGGTTGGATGAACAGCAACAGATAATGGAATCTCTTAATGTACTACACAGTGAAT  436
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CTTAGAAAGGGAACAACGGTGGTTGGATGAACAGCAACAGATAATGGAATCTCTTAATGTACTACACAGTGAAT  592

Query  437  TGAAAAATAAGGTTGAAACATTTTCTGAATCAAGAATCTTTAATGAACTGAAAACTAAAATGCTTAATATAAAA  510
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TGAAAAATAAGGTTGAAACATTTTCTGAATCAAGAATCTTTAATGAACTGAAAACTAAAATGCTTAATATAAAA  666

Query  511  GAATATAAGGAGAAACTCTTGAGTACCTTGGGCGAGTTTCTAGAAGACCATTTTCCTCTGCCTGATAGAAGTGT  584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GAATATAAGGAGAAACTCTTGAGTACCTTGGGCGAGTTTCTAGAAGACCATTTTCCTCTGCCTGATAGAAGTGT  740

Query  585  TAAAAAGAAAAAGAAAAACATTCAAGAATCATCTGTAAACCTGATAACACTGCATGAAATGTTAGAG----AT-  653
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    || 
Sbjct  741  TAAAAAGAAAAAGAAAAACATTCAAGAATCATCTGTAAACCTGATAACACTGCATGAAATGTTAGAGGGAAATA  814

Query  654  -------TCTTATA---------------------------AAT----------AGATTATT------------  671
                   | |||||                           |||          ||.|||.|            
Sbjct  815  TAGTACCT-TTATAGTGGAGAAACCCAGCAGACACCACCTTAATCACGTGGTCAAGGTTAATATCACAGCCAGA  887

Query  672  -TGATG----------------------------TTCCACA--TGATCCATATGTCAAAATTAG------TGAT  708
             |||||                            |||||||  || .|||.||||||.||  ||      ||.|
Sbjct  888  CTGATGTCAATGGAGGCCTTTGAAGAGGCTGAATTTCCACAGCTG-CCCAGATGTCACAA--AGCACTTCTGTT  958

Query  709  TCCTT---TTGG---------------------------------------CCACCT--TA-TGTTGAG-CTGC  736
            |||.|   .|||                                       |.||||  || ||.|||| ||| 
Sbjct  959  TCCCTACCCTGGGTGTCAAAAAGCCTGAGCAGAGAACGTGGACTTTCACCACTACCTGGTAGTGATGAGACTG-  1031

Query  737  TGC----------------------TGCGT-AATGGAATTGCC--------------TTGAG--ACATCCAG--  769
            |||                      ||.|| ||.||  |.|||              |||||  |.|||.||  
Sbjct 1032  TGCCCCATTTCCCCTCCACCAGAATTGTGTCAAAGG--TGGCCTGCTAAAACAAGATTTGAGTAAGATCTAGAG  1103

Query  770  ------AAGATCCAA----------------------CCCGAA-------TAAGATTAGAAGCTTT--------  800
                  ||.|.||||                      ||||||       .||.||..||| ||||        
Sbjct 1104  TGTTATAATAACCAAAATGTCCAGGGTACAATACATGCCCGAAGAACTAGGAAAATCTGAA-CTTTAATGAAAA  1176

Query  801  ------CCAT-CAG------------------------------------------------------------  807
                  .||| |||                                                            
Sbjct 1177  AAGACAACATACAGCAACATCAAGATAAAACAGAGGGCCAGGAGCAGTGGCTCCTGCCTATAATCCCAGCATCT  1250

Query  808  --------------------------  807
                                      
Sbjct 1251  TGGGAGGCCAAGGTAGGTGGATCATA  1276