Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04145
- Subject:
- NM_001326301.2
- Aligned Length:
- 2114
- Identities:
- 762
- Gaps:
- 1279
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGTGATGGTGGCCAACAAGAAAAGTCAGGACCAAATGACAGAGGATCTGTCCCTGTTTCTAGGGAACAACAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AATTCGATTCACCGTATGGCTTCATGGTGTATTAGATAAACTTCGCTCTGTTACAACTGAACCCTCTAGTCTGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGTCTTCTGATACCAACATCTTTGATAGTAACGTGCCTTCAAACAAGAGCAATTTCAGTCGGGGAGATGAGAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGGCATGAAGCTGCAGTGCCACCACTTGCCATTCCTAGCGCGAGACCTGAAAAAAGAGATTCCAGAGTTTCTAC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAGTTCGCAGGAGTCAAAAACCACAAATGTCAGACAGACTTACGATGATGGAGCTGCAACCCGACTAATGTCAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CAGTGAAACCTTTGAGGGAGCCAGCACCCTCTGAAGATGTGATTGATATTAAGCCAGAACCAGATGATCTCATT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GACGAAGACCTCAACTTTGTGCAGGAGAATCCCTTATCTCAGAAAAAACCTACAGTGACACTTACATATGGTTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TTCTCGCCCTTCTATTGAAATTTATCGACCACCTGCAAGTAGAAATGCAGATAGTGGTGTTCATTTAAACAGGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGCAATTTCAACAGCAGCAGAATAGTATTCATGCTGCCAAGCAGCTTGATATGCAGAGTAGTTGGGTATATGAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ACAGGACGTTTGTGTGAACCAGAGGTGCTTAACAGCTTAGAAGAAACGTATAGTCCGTTCTTTAGAAACAACTC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GGAGAAAATGAGTATGGAGGATGAAAACTTTCGGAAGAGAAAGTTGCCTGTGGTAAGTTCAGTTGTTAAAGTAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AAAAATTCAATCATGATGGAGAAGAGGAGGAAGAAGATGATGATTACGGGTCTCGAACAGGAAGCATCTCCAGC 888
Query 1 -ATGAGAATGT--CTTCAAAGTTT---------CCATC---ACCACCT----------CTACCA--------AT 41
.||.|..||| ||.|||||..| ||.|| .|||||| |||.|| ||
Sbjct 889 AGTGTGTCTGTGCCTGCAAAGCCTGAAAGGAGACCTTCTCTTCCACCTTCTAAACAAGCTAACAAGAATCTGAT 962
Query 42 TTT----------TCT-----TCCA----CCGGAGC-----CAGTGGACTTA---------GGTTCCA---TAA 79
||| ||| ||.| |||.|.| || |||.| .|||||| .||
Sbjct 963 TTTGAAGGCTATATCTGAAGCTCAAGAATCCGTAACAAAAACA----ACTAACTACTCTACAGTTCCACAGAAA 1032
Query 80 CA---AGCTCCTCTTGTTC-----ACT---------------GAATGAGCTAG--------------------- 109
|| |..|||..|||.|| ||| |||| .|||||
Sbjct 1033 CAGACACTTCCAGTTGCTCCCAGAACTCGAACTTCTCAAGAAGAAT-TGCTAGCAGAAGTGGTCCAGGGACAAA 1105
Query 110 -----------ACAATATTTCCCACCTTTTAAG----GAAAATATCAGCTGAT-------------ATCA---- 151
|.||||..||||.||.||.||| |.|||.|..||..||| ||||
Sbjct 1106 GTAGGACCCCCAGAATAAGTCCCCCCATTAAAGAAGAGGAAACAAAAGGAGATTCTGTAGAAAAAAATCAAGAT 1179
Query 152 ----ATGAAATTAAAGGAAT--------------GA---AAG--CAGCTATTTTGACAGTGGAAG-CAAATCTT 201
||||.|| ||||| || ||| ||..||||.||| .|||| ||||.||.
Sbjct 1180 TACTATGACAT----GGAATCCATGGTCCATGCAGACACAAGATCATTTATTCTGA----AGAAGCCAAAGCTG 1245
Query 202 TTTGATCTAAATGTTAG----AGTG-------TCCAAGA-------ATGAA----GCAAAAATTTCATCTTTGG 253
|.||| |..|| |||| .|||||| ||||| |||.| ||| .|||.||
Sbjct 1246 TCTGA-------GGAAGTAGTAGTGGCACCAAACCAAGAGTCGGGGATGAAGACTGCAGA---TTC-CCTTCGG 1308
Query 254 --------AGG-----TTAAAATGAATGA------ATATTCAACAA-CATATGAA--TGCAA----CAGACAGT 301
||| || |||.| || ||.||..|||| ||.||.|| ||||| || |||
Sbjct 1309 GTACTTTCAGGACACCTT---ATGCA-GACACGAGATCTTGTACAACCAGATAAACCTGCAAGTCCCA---AGT 1375
Query 302 T-----TGA-------------------------------------AGATCAAGAAGAAGA----TACT----- 324
| ||| |||||||||.||.|| |.||
Sbjct 1376 TTATAGTGACGCTGGATGGTGTCCCCAGCCCCCCAGGATACATGTCAGATCAAGAGGAGGACATGTGCTTTGAA 1449
Query 325 -GAATCA---CAGT----CAAGAACTACTGATGTAAAAATAATCGGCTTCCTTAGAAACGTTGAGAAAGGAACT 390
||||.| |.|| ||| |||| |.||.|| |||| ||||.|||
Sbjct 1450 GGAATGAAACCCGTAAACCAA-----ACTG-------------CAGCCTC-----AAAC-------AAGGGACT 1493
Query 391 CAACAGAGGCAATTATTATC-----CCGACTGCAAAT------------------------CGACCCAGTAATG 435
|||||| |.|| ||.||.|||..| .|||||| ||||
Sbjct 1494 ---CAGAGG-------TCTCCTCCACCCACAGCAGTTGCACTTGCTGAGCAGGCAGCTTGAGGACCCA--AATG 1555
Query 436 GCAGAAACTCTGCAGATGAGTCAAGCTGAGATGAGTGAACTGAGTGTGGCACAGAAACCAGAAAAACTTTTGGA 509
|.|| ||.|.| |.|.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GTAG---CTTTTC-------TAACGCTGAGATGAGTGAACTGAGTGTGGCACAGAAACCAGAAAAACTTTTGGA 1619
Query 510 GCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTGCCTACCATCACCCCATCTCACCCTGCAAAG 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GCGCTGCAAGTACTGGCCTGCTTGTAAAAATGGGGATGAGTGTGCCTACCATCACCCCATCTCACCCTGCAAAG 1693
Query 584 CCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTTTGTTCACCCAAATTGTAAATATGATGCAAAGTGTACT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694 CCTTCCCCAATTGTAAATTTGCTGAAAAATGTTTGTTTGTTCACCCAAATTGTAAATATGATGCAAAGTGTACT 1767
Query 658 AAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAATTCCAGTACTGTCTCCAAAAC---CAGTTGCACCACC 728
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1768 AAACCAGATTGTCCCTTCACTCATGTGAGTAGAAGAATTCCAGTACTGTCTCCAAAACCAGCAGTTGCACCACC 1841
Query 729 AGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCTGCTTGTAAGAAGATGGAATGTCCCTTCTATCATC 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 AGCACCACCTTCCAGTAGTCAGCTCTGCCGTTACTTCCCTGCTTGTAAGAAGATGGAATGTCCCTTCTATCATC 1915
Query 803 CAAAACATTGTAGGTTTAACACTCAATGTACAAGACCGGACTGCACATTCTACCATCCCACCATTAATGTCCCA 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1916 CAAAACATTGTAGGTTTAACACTCAATGTACAAGACCGGACTGCACATTCTACCATCCCACCATTAATGTCCCA 1989
Query 877 CCACGACATGCCTTGAAATGGATTCGACCTCAAACCAGCGAA 918
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1990 CCACGACATGCCTTGAAATGGATTCGACCTCAAACCAGCGAA 2031
