Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04249
- Subject:
- XM_011535265.2
- Aligned Length:
- 3337
- Identities:
- 1336
- Gaps:
- 1988
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAACGGCACCAGCCGCGGCTGCACCACCCGGCCCAAGGCTCAGCCGCTGGGACTCCCTACCCTTCCTCAGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCTCTCCGCGGCTGCCGGGAAAGCAAGATGCCGCGCAGGAAGGGCCCCCAACACCCTCCGCCGCCCAGTGGCC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCGAGGAGCCTGGGGAGAAGCGCCCCAAGTTTCATTTAAATATTAGGACACTGACGGATGATATGCTGGACAAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTTGCCAGCATAAGAATTCCAGGGAGCAAGAAAGAGAGACCTCCACTTCCCAACCTGAAGACTGCATTTGCAAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAGTGATTGCTCAGCAGCACCTTTAGAGATGATGGAGAACTTTCCAAAGCCACTGTCAGAGAATGAACTCTTAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AACTTTTTGAAAAAATGATGGAAGATATGAATTTAAATGAAGATAAAAAGGCACCATTGCGGGAAAAGGACTTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGTATCAAAAAAGAAATGGTGATGCAGTACATTAATACTGCTTCTAAGACAGGAAGTCTTAAGAGAAGCCGACA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GATCTCACCTCAGGAATTCATTCATGAGCTGAAAATGGGGTCTGCAGATGAGAGACTTGTCACATGCCTGGAGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CTCTCCGAGTGTCTTTGACCAGCAATCCTGTGAGTTGGGTGGAAAGCTTTGGACATGAAGGGCTTGGATTATTA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TTAGACATTTTGGAAAAACTGATTAGTGGAAAAATCCAAGAAAAAGTTGTAAAGAAAAATCAACATAAAGTCAT 740
Query 1 -------------------------------------------------ATGAGTGAGGAGAGGAGCCTTTCCT 25
|||||||||||||||||||||||||
Sbjct 741 ACAGTGTCTAAAAGCCCTGATGAATACGCAGTATGGCTTGGAAAGAATTATGAGTGAGGAGAGGAGCCTTTCCT 814
Query 26 TATTGGCCAAAGCCGTGGATCCCAGACACCCCAATATGATGACAGATGTGGTTAAACTTCTCTCTGCGGTATGC 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TATTGGCCAAAGCCGTGGATCCCAGACACCCCAATATGATGACAGATGTGGTTAAACTTCTCTCTGCGGTATGC 888
Query 100 ATTGTAGGGGAAGAAAGCATCCTTGAAGAAGTTTTAGAAGCTTTAACTTCAGCTGGTGAAGAAAAAAAAATTGA 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ATTGTAGGGGAAGAAAGCATCCTTGAAGAAGTTTTAGAAGCTTTAACTTCAGCTGGTGAAGAAAAAAAAATTGA 962
Query 174 CAGATTTTTTTGTATTGTGGAAGGCCTCCGGCACAATTCAGTTCAACTGCAAGTAGCTTGTATGCAGCTCATCA 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CAGATTTTTTTGTATTGTGGAAGGCCTCCGGCACAATTCAGTTCAACTGCAAGTAGCTTGTATGCAGCTCATCA 1036
Query 248 ATGCCCTGGTTACATCTCCTGATGATTTGGATTTCAGGCTTCACATCAGAAATGAATTTATGCGTTGTGGATTG 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ATGCCCTGGTTACATCTCCTGATGATTTGGATTTCAGGCTTCACATCAGAAATGAATTTATGCGTTGTGGATTG 1110
Query 322 AAAGAGATATTGCCAAATTTAAAATGCATTAAGAATGATGGCCTGGATATCCAACTTAAAGTCTTTGATGAGCA 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AAAGAGATATTGCCAAATTTAAAATGCATTAAGAATGATGGCCTGGATATCCAACTTAAAGTCTTTGATGAGCA 1184
Query 396 TAAAGAAGAAGATTTGTTTGAGTTATCCCATCGCCTTGAAGATATTAGAGCTGAACTTGATGAAGCATATGATG 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TAAAGAAGAAGATTTGTTTGAGTTATCCCATCGCCTTGAAGATATTAGAGCTGAACTTGATGAAGCATATGATG 1258
Query 470 TTTACAACATGGTGTGGAGCACAGTTAAAGAAACTAGAGCAGAGGGATATTTTATTTCTATTCTTCAGCATCTT 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTTACAACATGGTGTGGAGCACAGTTAAAGAAACTAGAGCAGAGGGATATTTTATTTCTATTCTTCAGCATCTT 1332
Query 544 TTGCTGATTCGAAATGATTATTTTATAAGGCAACAATACTTCAAATTAATTGATGAGTGTGTATCCCAGATTGT 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TTGCTGATTCGAAATGATTATTTTATAAGGCAACAATACTTCAAATTAATTGATGAGTGTGTATCCCAGATTGT 1406
Query 618 ATTGCATAGAGATGGAATGGATCCAGACTTCACATATCGAAAAAGACTAGATTTAGATTTAACCCAGTTTGTAG 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 ATTGCATAGAGATGGAATGGATCCAGACTTCACATATCGAAAAAGACTAGATTTAGATTTAACCCAGTTTGTAG 1480
Query 692 ACATTTGCATAGATCAAGCAAAACTAGAAGAGTTTGAAGAGAAAGCATCAGAACTTTACAAGAAATTTGAAAAA 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 ACATTTGCATAGATCAAGCAAAACTAGAAGAGTTTGAAGAGAAAGCATCAGAACTTTACAAGAAATTTGAAAAA 1554
Query 766 GAGTTTACCGACCACCAAGAAACTCAGGCTGAATTGCAGAAAAAAGAGGCAAAGATTAATGAGCTTCAAGCAGA 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GAGTTTACCGACCACCAAGAAACTCAGGCTGAATTGCAGAAAAAAGAGGCAAAGATTAATGAGCTTCAAGCAGA 1628
Query 840 GCTACAAGCTTTTAAGTCTCAGTTTGGTGCCTTGCCAGCTGATTGTAATATTCCTTTGCCTCCCTCTAAAGAAG 913
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GCTACAAGCTTTTAAGTCTCAGTTTGGTGCCTTGCCAGCTGATTGTAATATTCCTTTGCCTCCCTCTAAAGAAG 1702
Query 914 GTGGAACTGGCCACTCAGCACTTCCTCCTCCGCCTCCACTGCCTTCTGGTGGAGGGGTGCCGCCTCCACCTCCT 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GTGGAACTGGCCACTCAGCACTTCCTCCTCCGCCTCCACTGCCTTCTGGTGGAGGGGTGCCGCCTCCACCTCCT 1776
Query 988 CCCCCACCACCTCCTCCACTTCCAGGAATGCGGATGCCATTCAGTGGTCCTGTGCCTCCACCACCTCCCCTGGG 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CCCCCACCACCTCCTCCACTTCCAGGAATGCGGATGCCATTCAGTGGTCCTGTGCCTCCACCACCTCCCCTGGG 1850
Query 1062 ATTCCTTGGAGGACAAAATTCTCCTCCTCTACCAATCCTGCCATTTGGGTTGAAACCAAAGAAAGAATTTAAAC 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 ATTCCTTGGAGGACAAAATTCTCCTCCTCTACCAATCCTGCCATTTGGGTTGAAACCAAAGAAAGAATTTAAAC 1924
Query 1136 CTGAAATCAGCATGAGAAGATTGAATTGGTTAAAGATCAGACCTCATGAAATGACTGAAAACTGTTTCTGGATA 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 CTGAAATCAGCATGAGAAGATTGAATTGGTTAAAGATCAGACCTCATGAAATGACTGAAAACTGTTTCTGGATA 1998
Query 1210 AAAGTAAATGAAAATAAGTATGAAAACGTGGATTTGCTTTGTAAACTTGAGAATACATTTTGTTGCCAACAAAA 1283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 AAAGTAAATGAAAATAAGTATGAAAACGTGGATTTGCTTTGTAAACTTGAGAATACATTTTGTTGCCAACAAAA 2072
Query 1284 AGAGAGAAGAGAAGAGGAAGATATTGAAGAGAAGAAATCGATTAAGAAAAAAATTAAAGAACTTAAGTTTTTAG 1357
|| |||
Sbjct 2073 AG---------------------------------------------------------------------TAG 2077
Query 1358 ATTCTAAAATTGCCCAGAACCTTTCAATCTTCCTGAGCTCTTTTCGGGTGCCATATGAGGAAATCAGAATGA-T 1430
|| .||.||||.| ||| |||| ||.||.|| |
Sbjct 2078 AT---------------GACATTTCCA------------------GGG----------GGAA--CACAAAGAGT 2106
Query 1431 GATATTGGAAGTAGATGAAACACGGTTGGCAGAGTCTATGATTCAGAACTTAATAAAGCATCTTCCTGATCAAG 1504
| .||||| ..||.||||| |||.||.||.| ||||.
Sbjct 2107 G----GGGAAG-------CCCAGGGTTG----------TGACTCCGAGC---------------CCTGC----- 2139
Query 1505 AGCAATTAAATTCATTGTCTCAGTTCAAGAGTGAATATAGCAACTTATGTGAACCTGAGCAGTTTGTGGTTGTG 1578
Sbjct 2140 -------------------------------------------------------------------------- 2139
Query 1579 ATGAGCAATGTGAAGAGACTACGGCCACGGCTCAGTGCTATTCTCTTTAAGCTTCAGTTTGAAGAGCAGGTGAA 1652
Sbjct 2140 -------------------------------------------------------------------------- 2139
Query 1653 CAACATCAAACCTGACATCATGGCTGTCAGTACTGCCTGCGAAGAGATAAAGAAGAGCAAAAGCTTTAGCAAGT 1726
Sbjct 2140 -------------------------------------------------------------------------- 2139
Query 1727 TGCTGGAACTTGTATTGCTAATGGGAAACTACATGAATGCTGGCTCCCGGAATGCTCAAACCTTCGGATTTAAC 1800
Sbjct 2140 -------------------------------------------------------------------------- 2139
Query 1801 CTTAGCTCTCTCTGTAAACTAAAGGACACAAAATCAGCAGATCAGAAAACAACGCTACTTCATTTCCTGGTAGA 1874
Sbjct 2140 -------------------------------------------------------------------------- 2139
Query 1875 AATATGTGAAGAGAAGTACCCTGATATACTGAATTTTGTGGATGATTTGGAACCTTTAGACAAAGCTAGTAAAG 1948
Sbjct 2140 -------------------------------------------------------------------------- 2139
Query 1949 TCTCTGTAGAAACGCTGGAAAAGAATTTGAGGCAGATGGGAAGGCAGCTTCAACAGCTTGAGAAGGAATTGGAA 2022
Sbjct 2140 -------------------------------------------------------------------------- 2139
Query 2023 ACCTTTCCCCCTCCTGAGGACTTGCATGACAAGTTTGTGACAAAGATGTCCAGATTTGTTATCAGTGCAAAAGA 2096
Sbjct 2140 -------------------------------------------------------------------------- 2139
Query 2097 ACAATATGAGACACTTTCGAAGTTACACGAAAACATGGAAAAGTTATACCAGAGTATAATAGGATACTATGCCA 2170
Sbjct 2140 -------------------------------------------------------------------------- 2139
Query 2171 TTGATGTGAAGAAGGTGTCTGTGGAAGACTTTCTTACTGACCTGAATAACTTCAGAACCACATTCATGCAAGCA 2244
Sbjct 2140 -------------------------------------------------------------------------- 2139
Query 2245 ATAAAGGAGAATATCAAAAAAAGAGAAGCAGAGGAAAAAGAAAAACGTGTCAGAATAGCTAAAGAATTAGCAGA 2318
Sbjct 2140 -------------------------------------------------------------------------- 2139
Query 2319 GCGAGAAAGACTCGAACGCCAACAAAAGAAAAAGCGTTTATTAGAAATGAAGACTGAGGGTGATGAGACAGGAG 2392
Sbjct 2140 -------------------------------------------------------------------------- 2139
Query 2393 TGATGGATAATCTGCTGGAGGCCTTGCAGTCCGGGGCTGCCTTCCGCGACAGAAGAAAAAGGACACCGATGCCA 2466
Sbjct 2140 -------------------------------------------------------------------------- 2139
Query 2467 AAAGATGTTCGGCAGAGTCTCAGTCCAATGTCTCAGAGGCCTGTTCTGAAAGTTTGTAACCATGGTAATAAACC 2540
Sbjct 2140 -------------------------------------------------------------------------- 2139
Query 2541 GTATTTA 2547
Sbjct 2140 ------- 2139
