Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04688
- Subject:
- XR_941487.1
- Aligned Length:
- 2226
- Identities:
- 1080
- Gaps:
- 1089
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTCTTGTAGTGGCGCCGGCTTGCATCCCAGGTCGTGGCGGTTTTGGTGCCTGAAGCAGGGAGCGCGGAGTCGTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCGAGAGAGGCGGCCAGGCTATGCTCGCCGGTTTCCGGCGTTCCGCTCCGGCCAGCCAGAGTCTCTGTCTCAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CCTGTGTCCGTGCTCCAGCAGTCTCCTCAGCCCGGCCCCGCGGCGCGGTTGGCGGCGGCGCCCCAGGCGCGCCC 222
Query 1 ---------ATGGCGGCGGAGATCCAGCCCAAGCCTCTGACCCGCAAGCCGATCCTGCTGCAGCGGATGGAGGG 65
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCTCCTCCGATGGCGGCGGAGATCCAGCCCAAGCCTCTGACCCGCAAGCCGATCCTGCTGCAGCGGATGGAGGG 296
Query 66 GTCCCAGGAGGTGGTGAATATGGCCGTGATCGTGCCCAAAGAGGAGGGCGTCATCAGCGTCTCCGAGGACAGGA 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTCCCAGGAGGTGGTGAATATGGCCGTGATCGTGCCCAAAGAGGAGGGCGTCATCAGCGTCTCCGAGGACAGGA 370
Query 140 CAGTTCGTGTTTGGTTAAAGAGAGACAGTGGACAGTATTGGCCAAGCGTATACCATGCAATGCCTTCTCCATGT 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CAGTTCGTGTTTGGTTAAAGAGAGACAGTGGACAGTATTGGCCAAGCGTATACCATGCAATGCCTTCTCCATGT 444
Query 214 TCATGCATGTCTTTTAACCCGGAAACAAGAAGACTGTCCATAGGTCTAGACAATGGTACAATCTCAGAGTTTAT 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCATGCATGTCTTTTAACCCGGAAACAAGAAGACTGTCCATAGGTCTAGACAATGGTACAATCTCAGAGTTTAT 518
Query 288 ATTGTCAGAAGATTATAACAAGATGACTCCTGTGAAAAACTATCAAGCGCATCAGAGCAGAGTGACGATGATCC 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ATTGTCAGAAGATTATAACAAGATGACTCCTGTGAAAAACTATCAAGCGCATCAGAGCAGAGTGACGATGATCC 592
Query 362 TGTTTGTCCTGGAGCTGGAGTGGGTGCTGAGCACAGGACAGGACAAGCAATTTGCCTGGCACTGCTCTGAGAGT 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TGTTTGTCCTGGAGCTGGAGTGGGTGCTGAGCACAGGACAGGACAAGCAATTTGCCTGGCACTGCTCTGAGAGT 666
Query 436 GGGCAGCGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCAGGCCTGCAATTTGATGTTGAAACCCGGCATGT 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GGGCAGCGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCAGGCCTGCAATTTGATGTTGAAACCCGGCATGT 740
Query 510 GTTTATCGGTGACCACTCAGGCCAAGTAACAATCCTCAAACTGGAGCAAGAAAACTGCACCCTGGTCACAACAT 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GTTTATCGGTGACCACTCAGGCCAAGTAACAATCCTCAAACTGGAGCAAGAAAACTGCACCCTGGTCACAACAT 814
Query 584 TCAGAGGACACACAGGTGGGGTGACCGCTCTCTGTTGGGACCCAGTCCAGCGGGTGTTGTTCTCAGGCAGTTCA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TCAGAGGACACACAGGTGGGGTGACCGCTCTCTGTTGGGACCCAGTCCAGCGGGTGTTGTTCTCAGGCAGTTCA 888
Query 658 GATCACTCTGTCATCATGTGGGACATCGGTGGGAGAAAAGGAACAGCCATCGAGCTCCAAGGACACAACGACAG 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GATCACTCTGTCATCATGTGGGACATCGGTGGGAGAAAAGGAACAGCCATCGAGCTCCAAGGACACAACGACAG 962
Query 732 AGTCCAGGCCCTCTCCTATGCACAGCACACGCGACAATTGATCTCCTGTGGCGGTGATGGTGGGATTGTCGTCT 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGTCCAGGCCCTCTCCTATGCACAGCACACGCGACAATTGATCTCCTGTGGCGGTGATGGTGGGATTGTCGTCT 1036
Query 806 GGAACATGGACGTGGAGAGGCAGGAGACCCCTGAATGGTTGGACAG-TGATTCCTG----CCAAAAGTG----- 869
|||||||||||||||||||||||||| ||.||| ||| || ||.|||.|| ..|.|||||
Sbjct 1037 GGAACATGGACGTGGAGAGGCAGGAG-CCTCTG--TGG------AGCTGCTTCGTGGTTATGATAAGTGCTGTG 1101
Query 870 ---TGATCAGCCTT-------------------------TCTTCTGGAAC------------------TTC--- 894
||.||| |||| ||.|||..||| |||
Sbjct 1102 TGATGCTCA-CCTTGGGAGGTCTGCGACATATATTGAAGTCATCTCTAACCTGAAGTACTGACAGACTTTCTGG 1174
Query 895 AAGCAAA----TGTGGGA--------CAG--------TAA--------------GAA-----AATTGGTCTAAG 929
|||.||| |||.||| ||| ||| ||| |.|||.|.||.|
Sbjct 1175 AAGAAAAGGCTTGTAGGAGGAAACTTCAGAATTCTATTAAATGGTGTAAATGATGAAATTATAGTTGATATATG 1248
Query 930 --ACAGCACCACTGCCGCAAGTGTGG--------GAAGGCCGTCTG-TGGCAAGTGCAGCTCCAAGCGCTCCTC 992
|.||||.||.||| ||| ||||| | ||| |||
Sbjct 1249 CTAGAGCATCAGTGC--------TGGGTATTTTAGAAGG------GATGG--AGT------------------- 1287
Query 993 CATCCCCCTGATGGGCTTCGA--GTT-----TGAAG---TGAGGGTCTGTGACA----GCTGCCACGAGGCCAT 1052
|||| ||.|||| | ||| ||||| |||||| .|..||| |||| .||| ||
Sbjct 1288 CATC------ATTGGCT---AATGTTCCCAGTGAAGGATTGAGGG--AGGAACATTGTGCTG----AAGG--AT 1344
Query 1053 C-ACAGATGAAGAACGTGCACCCA-CAG--CCAC-----CTT------CCATG--ACAGTAA--------ACA- 1100
| |||||....|.|.||||.|..| ||| .||| ||| |||.| ||||.|| |||
Sbjct 1345 CAACAGAGTCTGGATGTGCTCTGAGCAGGAGCACATGGGCTTTGCAGGCCACGAAACAGCAAGAGTAAGGACAA 1418
Query 1101 ---TAACA-------TTG-TGCATGTGCATT-----TC--------------GATGCA-------ACCAGAGGA 1137
.|||| ||| |||| ||||||| || ||.||| |..||||||
Sbjct 1419 GGTGAACACGATAGGTTGATGCA-GTGCATTAATGCTCATGAGCGGTTTAGAGAAGCAGTCAGAGATGAGAGGA 1491
Query 1138 TGG----TTACTGA-------------------------CTT------CTGGA---------ACTGACA----- 1162
||| |..|||| ||| ||||| |.|||||
Sbjct 1492 TGGCAGCTAGCTGAAAGATAAGGACAGACAATGGAAGACCTTGAGTGGCTGGATGTAGATCGAGTGACATTGCA 1565
Query 1163 -AGGTTATTAAGTTGTGGGAT-------ATG-ACCCCAGTCGTGTCT--------------------------- 1200
|||||....||.|||...|| ||| |..|||.|..|||.|
Sbjct 1566 TAGGTTGAACAGGTGTTTTATACAGTTAATGAAATCCATTTTTGTTTTGTTAACTTTTAGCATTTTTTAAAAGT 1639
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 1640 ATATATTGTATATAACATTCTTGGTAGAAAAGTTACAAAATGCTCATTAGTAAATAGAAAAGATGTCAATTACT 1713
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 1714 CATACTACCACCATCCAGAAATATCACTCTGAACATGTTGGCACACATCCTTCCTAACATTTTTCTCTACACAT 1787
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 1788 AACACGTGTGTAAGACTTTTTTTTGAACAAAAAATAGAATCACAAACATGCTGATTTATTTTTTCCCCTTTATT 1861
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 1862 GGTCTTTAGCTCCCAAATGCCTCCTCACAGATACCCACTGTGATGTGTTTGATGTGTGTCCTGAACACGCATGC 1935
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 1936 TTCCTTATAAAAGGGCGTGTAGACTGGCACAAACTCCCTGGTACCACACACAGTGCCCAGATGACCTTCTTATA 2009
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 2010 TGTGTCCCGTCACAGACCTGCCCTGTATGAGACTCAGGGCCATAAACCCAAGAGTGGGATCAATTGAAGACCCC 2083
Query 1201 -------------------------------------------------------------------------- 1200
Sbjct 2084 TGAATGGTTGGACAGTGATTCCTGCCAAAAGTGTGATCAGCCTTTCTTCTGGAACTTCAAGCAAATGTGGGACA 2157
Query 1201 ------ 1200
Sbjct 2158 GTAAGA 2163