Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_04772
- Subject:
- XR_391360.3
- Aligned Length:
- 3025
- Identities:
- 840
- Gaps:
- 2100
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTTCGTTGCCCTGGCCCCCTTCTTCCCCGAACCCTACTCCAGTTAGCCAGGCCCGCCTCTCCGCAGGCTCCGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCGTAGCCCCGCCCTCCCTGTGTTTTTAGACTGCCTACCAGCGCAGCCTGAGCCGCTGAGTGCCGGTCAGCGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCGCCGAGAATTGGACCAAATGGACCAGTTTTGACAAGATGTAGTGCGACAGCACTTCCGGTTGGACATGTTCA 222
Query 1 ---ATGGCGTCCGAACTTTGTAAGACGATCTCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATTA 71
|||||.||||||.|.||||||||||||||||||||.|||||.|||||||||||||||||||||||||||||
Sbjct 223 GTCATGGCATCCGAAATCTGTAAGACGATCTCTGTGGCCAGGCTTGAAAAGCACAAGAATTTGTTCTTAAATTA 296
Query 72 TAGGAATCTGCACCATTTTCCATTGGAGTTACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTATATGA 145
.|||||||||||||||||||||.|||||||.|||||.||||||||.||||||.||.|||||||.||||||||||
Sbjct 297 CAGGAATCTGCACCATTTTCCACTGGAGTTGCTGAAGGATGAGGGGCTGCAGCACCTGGAGAGGCTCTATATGA 370
Query 146 AAAGGAACTCCCTGACATCCTTGCCAGAAAACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTATACCTGCAC 219
|||||||||||||.|||.||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||
Sbjct 371 AAAGGAACTCCCTCACAACCTTGCCAGAAAACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTGTACCTTCAC 444
Query 220 TCAAATAACATAGTTGTGGTTCCGGAAGCCATTGGGTCTCTTGTAAAACTCCAATGTCTGGATCTTAGTGACAA 293
|||||||||||||||||||||||.||||||||.|||||.||.||.||||||||.|||||||||||.||||||||
Sbjct 445 TCAAATAACATAGTTGTGGTTCCAGAAGCCATCGGGTCCCTCGTGAAACTCCAGTGTCTGGATCTCAGTGACAA 518
Query 294 TGCCTTAGAAATTGTTTGCCCAGAAATTGGTCGTCTGAGAGCTTTACGTCATCTTCGATTAGCTAATAACCAAC 367
|||||||||.||.||||||||||||||.|||.||||||||||.||.||||||||||||||||||||||||||.|
Sbjct 519 TGCCTTAGAGATCGTTTGCCCAGAAATCGGTGGTCTGAGAGCGTTGCGTCATCTTCGATTAGCTAATAACCAGC 592
Query 368 TGCAATTCCTACCTCCAGAGGTTGGCGATTTGAAGGAGCTGCAGACACTAGACATTTCTACCAATCGTTTGCTA 441
|.||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||.||||||
Sbjct 593 TACAGTTCCTACCTCCAGAGGTTGGCGATTTGAAGGAGCTGCAGACACTAGACATTTCTAGCAATCGCTTGCTA 666
Query 442 ACTTTACCCGAGAGGCTTCACATGTGCCTTTCTCTGCAGTACCTCACTGTGGACCGAAATCGTCTATGGTATGT 515
.||||||||||||||||||||.||||||||||||||||||||||||||||||||||.|||||.|||||.|.|||
Sbjct 667 GCTTTACCCGAGAGGCTTCACCTGTGCCTTTCTCTGCAGTACCTCACTGTGGACCGCAATCGGCTATGCTGTGT 740
Query 516 GCCGCGCCATCTCTGCCAGCTGCCCAGCCTCAATGAGCTCTCCATGGCTGGAAACCGTCTTGCATTTTTGCCAC 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.||||||..
Sbjct 741 GCCGCGCCATCTCTGCCAGCTGCCCAGCCTCAATGAGCTCTCCATGGCTGGAAACCATCTTGCATCTTTGCCCA 814
Query 590 TTGATTTAGGTCGATCTCGAGAACTACAGTATGTATACGTGGATAACAACATTCACCTGAAAGGCTTGCCATCT 663
|||||||||||||.||.||||||||.|||||.||.||.||||||||||||||.||.|||||.|||.||||.||.
Sbjct 815 TTGATTTAGGTCGCTCCCGAGAACTGCAGTACGTGTATGTGGATAACAACATCCAGCTGAAGGGCCTGCCCTCA 888
Query 664 TATCTGTACAATAAAGTCATCGGGTGCAGTGGCTGTGGTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTC 737
||.||.|||||.|||||||||||.||||
Sbjct 889 TACCTCTACAACAAAGTCATCGGCTGCA---------------------------------------------- 916
Query 738 CTTTTCATCAGGGCAGCGAACCGTTTTCCTCCCAGCTGAGGTGAAGGCCATAGGGACGGAGCATGATCACGTCC 811
|||
Sbjct 917 -------------------------------------------------------ACG---------------- 919
Query 812 TCCCTCTGCAGGAATTGGCTATGAGAGGGCTGTATCATACCTACCACAGCTTGCTGAAAGATTTGAACTTTCTG 885
|||.||||||||.||
Sbjct 920 -----------------------------------------------------------GATCTGAACTTTTTG 934
Query 886 TCTCCAATCTCATTACCCAGAAGTCTCCTAGAGCTGCTGCACTGCCCTCTGGGGCACTGTCATCGGTGTAGTGA 959
|||||||||||||||||||||||||||||.|||||||||||||||||.||||||||||||||.|.|||||||||
Sbjct 935 TCTCCAATCTCATTACCCAGAAGTCTCCTGGAGCTGCTGCACTGCCCCCTGGGGCACTGTCACCTGTGTAGTGA 1008
Query 960 GCCTATGTTTACCATCGTCTACCCCAAGCTCTTTCCCTTGAGAGAGACGCCAATGGCAGGGCTGCACCAGTGGA 1033
|||.|||||||||.|||||||.||.|||.||||.|||||||||||||||||.||||||||.|||||||||.|||
Sbjct 1009 GCCCATGTTTACCTTCGTCTATCCTAAGATCTTCCCCTTGAGAGAGACGCCGATGGCAGGCCTGCACCAGAGGA 1082
Query 1034 AGACAACTGTTAGTTTTGTGGCTTACTGCTGCTCCACCCAGTGTCTGCAGACTTTTGACCTGCTGAGT------ 1101
.|||||.|.||.|.||.|||||||||||||||||||||||||||||||.|||||||.||||||||.||
Sbjct 1083 GGACAAGTATTGGCTTCGTGGCTTACTGCTGCTCCACCCAGTGTCTGCGGACTTTTAACCTGCTGTGTTGATAA 1156
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1157 ACACTCGAGAGCCTTAGGAGCACTGCCAGCTCAGCCACTGCGACTGCCTTCCATCGCCAGTGTGTGCGGCCAGG 1230
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1231 CCAGGAGAGTCCAGCCAGGCAGGACAGACCCTTCCATCCTGCCTGCCCTGTCCTGAGGAGGGCCGTGCTGAACT 1304
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1305 CTGGGAATGTCCTGATTGGGCTTCACAACTAAAAGGCCTTCGCTTTTCCCTCAAGTCGGAATACATCCTCCCCC 1378
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1379 AAATGAAGGACGTGTTGTCTTCTGTGTTTTTCTTTGTATGTGAGTGTGTCTCATATATAAACTTAGTCAAATGA 1452
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1453 GCTTCCCCACATCTAATTTAAAGCGAGCTGCAGTTCCCTGAAGAACTCTTAATTTGATAATAGAACCAAATTAA 1526
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1527 CTGTTGGATGACATACGTTTGGTGATGATCCTGCCTTCCCCCAGAGGATGATTTCCCCTGGAGATTATTCTTAG 1600
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1601 GAGCTTCTCCATTGGAAACTTGTCACTTTCTAGAGTCTCTGCAACGCCTATGGCCTCAGCAGCCAGCATAGCAG 1674
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1675 GGCAGGGTGCCCGGGCTGGAGCAGCTAGGCTCCTGCAGAGGCACAGCTGGCTCCAGAGCACACGCCCTCTGGAA 1748
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1749 ACTTCCTGTCTTATTTCTAAGTTTTGCAACCTAGGAAGACATTTTTTGAGAGGGATTTAAAAACAAAAATGTAG 1822
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1823 ACACAAATTAAATATACTTTTGTTCTAAACTACTATAGAAAAAGAAGTTTTGAATTTTTTTTTTTTTTTTTTTG 1896
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1897 CTAAGATTTTCCTATAATTGGGAAGTTTGAGGCATCTGATGCTCTGCTGTGGATGGGGCTTAGTGGTATTTACC 1970
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 1971 CGGTACATGAAATTGCCTTCATTTTCCTCTGACTTCTCCCTAGGGAAACAGAAGGAATGAACGGGTCCACATCC 2044
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2045 CACCTTTGCAAAAATCCCATGAGCTTTCCCTTGCCAGAGAGATGAGCTCTCTGGGGGGACAGCTGATTGGCTCT 2118
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2119 TCCTCTGAAAGGATGCCACCATAATCTGTTTTACTTTCAGGTGTTCGTTGGGCTGCTTTGGGGGGGGGGTAAAA 2192
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2193 GTTCTCTGTTTACTGGTATGATTTATGTAAGACAAGACTGAAAGGGGAATCAAGAAGGCTTGCTTGGTGGGAAA 2266
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2267 GCTATTTCCCAAAACTTTGGTTGGTGACATTTTGTTAGCCAGCCTGACTGTAATTCTAGGCTCTAACAGTGCCA 2340
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2341 AAAATCCTACATAGTTACTGACAAGTGTGTGATCTCTTTGCAGTCACACCACCTGCTGCCTGAAAAGCAGACTC 2414
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2415 TTCCAAGTAATGGCAGAGGCAGAAAGCGGCCATGCATGCCATGTGTGGCCACTGTCCCTACTTCCTCCCGTCCC 2488
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2489 TTTCACAACTTGCTCTGTTCAGCCTTAATATTTCAAAGGCCTACAGTATAATAGGAGCTGAGCGTCTGGATCAA 2562
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2563 GTGTATCTCTTCTTTCATCCTTTCGGAAGAATGGAAGTTTCAGCACAACCCCGACATGTATATAAGCTGAAGGC 2636
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2637 AGGAAAATGTGGCCTGACACTTCACATCCGTGCTTGACTTAATTGAACGACAGGGAAACACAGGGCTGCATCTG 2710
Query 1102 -------------------------------------------------------------------------- 1101
Sbjct 2711 TGTTTTGCCCTCGACCATCTTATGTCTTAAGTGGAGCTATGAAATGTCACCCTGATACTCAGGAATTCTCATTG 2784
Query 1102 ----------------------------------------------------------------- 1101
Sbjct 2785 AGAGAAGGTGTGGGATACTTTTGTTCTAACTTGTTTAAATTCTTAATAAAGGTGTTTACACTCCA 2849
