Nucleotide Global Alignment

Description

Query:
ccsbBroad304_04966
Subject:
XR_001747777.1
Aligned Length:
2256
Identities:
1142
Gaps:
1113

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGGGGCGGGTCCGCGGCTGGCCGGCCGGGCGGGCGCCGACAATGAGCCTCCATAAAAGGGAGCGGCGGGGGGCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGGGCCCCGGATTGAGCCCTCCCCGCCCGGGCTCCCGACGCGCCGAGGTCTCGGGGAGGCCCGGACGCGCCGGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGCAGGCCCGGCCGGCGAGCGGCGGGCGGGCGGCGGGGAGGGGGCTGCGCGGGGCGGGCGGCGGGCCCGGCGCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  ATTCCGGCCAGGAGGCGGGAGGCGGTTGCCGGCTGCGCGCCGAAGCCTGCGCGCCAGTCCTCCGGCCACTGCTA  296

Query    1  -----------------ATGGCCCTAAAGGCCGAGGGCGCCGCACTCGACTGCTTCGAGGTGACGCTGAAATGC  57
                             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TCGCCCACGGCCGCACCATGGCCCTAAAGGCCGAGGGCGCCGCACTCGACTGCTTCGAGGTGACGCTGAAATGC  370

Query   58  GAGGAAGGGGAGGACGAGGAGGAGGCCATGGTGGTGGCCGTAATTCCGCGGCCCGAGCCGATGCTCAGAGTGAC  131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GAGGAAGGGGAGGACGAGGAGGAGGCCATGGTGGTGGCCGTAATTCCGCGGCCCGAGCCGATGCTCAGAGTGAC  444

Query  132  CCAACAGGAGAAGACCCCACCGCCTAGACCCAGCCCGCTAGAGGCAGGCAGTGATGGCTGTGAGGAGCCGAAGC  205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CCAACAGGAGAAGACCCCACCGCCTAGACCCAGCCCGCTAGAGGCAGGCAGTGATGGCTGTGAGGAGCCGAAGC  518

Query  206  AGCAGGTGTCTTGGGAGCAGGAGTTCCTGGTGGGCAGCAGCCCAGGAGGCAGCGGGCGGGCACTGTGCATGGTG  279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  AGCAGGTGTCTTGGGAGCAGGAGTTCCTGGTGGGCAGCAGCCCAGGAGGCAGCGGGCGGGCACTGTGCATGGTG  592

Query  280  TGTGGCGCTGAGATCCGGGCACCCTCGGCCGACACAGCTCGCTCGCACATCTTGGAGCAGCACCCTCACACCTT  353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TGTGGCGCTGAGATCCGGGCACCCTCGGCCGACACAGCTCGCTCGCACATCTTGGAGCAGCACCCTCACACCTT  666

Query  354  GGACCTGAGCCCTTCTGAGAAGAGCAATATCCTGGAGGCCTGGAGTGAAGGGGTGGCCCTCTTGCAAGACGTGA  427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGACCTGAGCCCTTCTGAGAAGAGCAATATCCTGGAGGCCTGGAGTGAAGGGGTGGCCCTCTTGCAAGACGTGA  740

Query  428  GAGCTGAGCAGCCGTCCCCACCCAACTCAGACTCGGGCCAGGATGCCCACCCAGACCCAGACGCCAACCCAGAC  501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GAGCTGAGCAGCCGTCCCCACCCAACTCAGACTCGGGCCAGGATGCCCACCCAGACCCAGACGCCAACCCAGAC  814

Query  502  GCTGCCAGAATGCCAGCCGAAATCGTCGTTCTCCTTGACTCTGAGGATAACCCATCCCTCCCTAAAAGGAGCAG  575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct  815  GCTGCCAGAATGCCAGCCGAAATCGTCGTTCTCCTTGACTCTGAGGATAACCCATCCCTCCCTAAAAGGAGCCG  888

Query  576  GCCCAGGGGACTCCGCCCCCTCGAGCTTCCTGCTGTCCCTGCCACAGAGCCAGGAAATAAGAAGCCCCGTGGTC  649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GCCCAGGGGACTCCGCCCCCTCGAGCTTCCTGCTGTCCCTGCCACAGAGCCAGGAAATAAGAAGCCCCGTGGTC  962

Query  650  AGAGATGGAAGGAACCCCCAGGGGAAGAGCCAGTCAGAAAGAAAAGAGGCAGACCTATGACCAAAAACCTGGAC  723
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AGAGATGGAAGGAACCCCCAGGGGAAGAGCCAGTCAGAAAGAAAAGAGGCAGACCTATGACCAAAAACCTGGAC  1036

Query  724  CCTGACCCAGAGCCCCCATCGCCAGACTCGCCCACGGAGACTTTCGCAGCACCAGCCGAGGTCCGACACTTCAC  797
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CCTGACCCAGAGCCCCCATCGCCAGACTCGCCCACGGAGACTTTCGCAGCACCAGCCGAGGTCCGACACTTCAC  1110

Query  798  TGACGGCAGCTTCCCCGCCGGCTTCGTCTTGCAGCTCTTCTCCCACACCCAGCTCAGGGGCCCAGACAGCAAGG  871
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TGACGGCAGCTTCCCCGCCGGCTTCGTCTTGCAGCTCTTCTCCCACACCCAGCTCAGGGGCCCAGACAGCAAGG  1184

Query  872  ACTCACCCAAAGACAGGGAAGTGGCAGAAGGAGGCCTTCCCCGGGCGGAGAGCCCCTCTCCA------------  933
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct 1185  ACTCACCCAAAGACAGGGAAGTGGCAGAAGGAGGCCTTCCCCGGGCGGAGAGCCCCTCTCCAGTTTCAGCTTGA  1258

Query  934  --------------------------------------------------------------------------  933
                                                                                      
Sbjct 1259  GTCACATTCCAGTCCTGGCTCCCTGAGACCGAGTGTGCTGCTTGGACTTGAGCGTGTCCCGAGTCTCCTGGTCC  1332

Query  934  --------------------------------------------------------------------------  933
                                                                                      
Sbjct 1333  TCTCCGGTGGATCCCTGCTCTAAATGGCTGACCTCTTCCACTGTCTAATGGGTCTTCTGATTTCATTCTCGAAA  1406

Query  934  ----------------------------------------------------------GCTCCCCCTCCGGGGC  949
                                                                      ||||||||||||||||
Sbjct 1407  GGGAGCCCTCATTTCAAGTCCTGGGGTACCCTGTGCGCAAACTCCATCTATCTGGAGTGCTCCCCCTCCGGGGC  1480

Query  950  TCCGCGGGACACTGGATCTCCAGGTTATCCGCGTGCGGATGGAGGAGCCCCCAGCGGTCAGCCTCCTGCAAGAC  1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TCCGCGGGACACTGGATCTCCAGGTTATCCGCGTGCGGATGGAGGAGCCCCCAGCGGTCAGCCTCCTGCAAGAC  1554

Query 1024  TGGTCCAGGCACCCCCAGGGCACCAAGCGTGTGGGAGCAGGTGACACCTCAGACTGGCCCACAGTTCTGTCAGA  1097
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TGGTCCAGGCACCCCCAGGGCACCAAGCGTGTGGGAGCAGGTGACACCTCAGACTGGCCCACAGTTCTGTCAGA  1628

Query 1098  ATCCAGCACCACTGTGGCAGGGAAGCCGGAAAAAGGGAATGGAGTG----------------------------  1143
            ||||||||||||||||||||||||||||||||||||||||||||||                            
Sbjct 1629  ATCCAGCACCACTGTGGCAGGGAAGCCGGAAAAAGGGAATGGAGTGTAAATTCTTGCTTTCCTGGGGAGGGAGG  1702

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1703  GAGGGATGAGGCAGCGTCCCCCAGTGGCTTATAACTCAGAGCTGCCTGGCTCACCCACCTGGTGGAGAGAGTAG  1776

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1777  AAACAGGTGCCAGGGCAGGAGGGGGCTGGGGCAGCATCCACTGTTATTTCGGGGCACTGGAAAGTGTCTGTTCC  1850

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1851  TGGCCAGGCCTGAGGTCGGCGAGGGTGGCTGAGGCTGTTGTGCAGTAGGGCACTGGGCCTGTGGAGAACACCTA  1924

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1925  CCCCAGTCCTTCGCTGACCCCCACCTCTGTTTGTCCCCCATGACCTCCTCCCACCCTCCCCCTGCTCCCCACCA  1998

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 1999  TTCTCCCTTGGCACAGTGCCTTACACAAGAGTGGTCATAAGGGGGTTTGAACTGAGTCCCACTACCTCGGGGGA  2072

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2073  CACCTCTCCTCCCCACTTGTTCAGGCTTCTAAACCAGGAGGCCTCCATTACCTCTTCCTGTCCCACCCCTGCAG  2146

Query 1144  --------------------------------------------------------------------------  1143
                                                                                      
Sbjct 2147  AGGCCTGAAGCTGGGCCTGGGCACCCCATTCACTCCCGTTCTCATTTACATCTGTTTTCCTGTTGTATATATCA  2220

Query 1144  ------------------------------------  1143
                                                
Sbjct 2221  CCTTTGTTGACAATAAATTATTTTTTTTTATTAAGA  2256

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