Construct: ORF ccsbBroad304_04966

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000776.1_s304c1, BRDN0000410780
Derived from:
ccsbBroadEn_04966
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SPINDOC (144097)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_04966
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 144097 SPINDOC spindlin interactor and rep... NM_138471.3 99.9% 100% 574C>A
2 human 144097 SPINDOC spindlin interactor and rep... XM_011544770.1 94.1% 79.2% (many diffs)
3 human 144097 SPINDOC spindlin interactor and rep... XM_011544772.1 89.6% 84.5% 574C>A;927_928ins38;1026_1027ins79
4 human 144097 SPINDOC spindlin interactor and rep... XM_006718437.1 88.5% 80.1% 574C>A;934_991del;1122_1123ins79
5 human 144097 SPINDOC spindlin interactor and rep... XM_005273782.3 86.5% 82.8% (many diffs)
6 human 144097 SPINDOC spindlin interactor and rep... XM_011544771.1 83.6% 69.1% (many diffs)
7 human 144097 SPINDOC spindlin interactor and rep... XM_005273783.3 81.9% 81.6% (many diffs)
8 human 144097 SPINDOC spindlin interactor and rep... XR_001747777.1 50.6% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1209
ORF length:
1143
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc cctaaaggcc gagggcgccg cactcgactg cttcgaggtg acgctgaaat
121gcgaggaagg ggaggacgag gaggaggcca tggtggtggc cgtaattccg cggcccgagc
181cgatgctcag agtgacccaa caggagaaga ccccaccgcc tagacccagc ccgctagagg
241caggcagtga tggctgtgag gagccgaagc agcaggtgtc ttgggagcag gagttcctgg
301tgggcagcag cccaggaggc agcgggcggg cactgtgcat ggtgtgtggc gctgagatcc
361gggcaccctc ggccgacaca gctcgctcgc acatcttgga gcagcaccct cacaccttgg
421acctgagccc ttctgagaag agcaatatcc tggaggcctg gagtgaaggg gtggccctct
481tgcaagacgt gagagctgag cagccgtccc cacccaactc agactcgggc caggatgccc
541acccagaccc agacgccaac ccagacgctg ccagaatgcc agccgaaatc gtcgttctcc
601ttgactctga ggataaccca tccctcccta aaaggagcag gcccagggga ctccgccccc
661tcgagcttcc tgctgtccct gccacagagc caggaaataa gaagccccgt ggtcagagat
721ggaaggaacc cccaggggaa gagccagtca gaaagaaaag aggcagacct atgaccaaaa
781acctggaccc tgacccagag cccccatcgc cagactcgcc cacggagact ttcgcagcac
841cagccgaggt ccgacacttc actgacggca gcttccccgc cggcttcgtc ttgcagctct
901tctcccacac ccagctcagg ggcccagaca gcaaggactc acccaaagac agggaagtgg
961cagaaggagg ccttccccgg gcggagagcc cctctccagc tccccctccg gggctccgcg
1021ggacactgga tctccaggtt atccgcgtgc ggatggagga gcccccagcg gtcagcctcc
1081tgcaagactg gtccaggcac ccccagggca ccaagcgtgt gggagcaggt gacacctcag
1141actggcccac agttctgtca gaatccagca ccactgtggc agggaagccg gaaaaaggga
1201atggagtgta cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc
1261tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa
1321tcaacctctg gatta

Download FASTA (ORF) (Full)