Nucleotide Global Alignment

Description

Query:
ccsbBroad304_05019
Subject:
XR_001736987.1
Aligned Length:
4784
Identities:
1315
Gaps:
3468

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCGGGGCCGGGAGCTGCGAGGAGCCCCCCAGACGTCGCCGAGCGCGAGGGCGGGCGTGCTCGGAGTGGTCGCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGTCAGCCGCCGCCCCTCAGTCTCCGCACTTGCAGGTCCCCTCCCTCTCCGCCGGGACGCGGGAGAGCCCGGCT  148

Query    1  -----------------ATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTGCACCTC  57
                             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CGCGGCGGGGGCGGCCAATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTGCACCTC  222

Query   58  TGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTG----------------------  109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||                      
Sbjct  223  TGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTGCAGGTGGAGTCTCACTCTTGTT  296

Query  110  --------------------------------------------------------------------------  109
                                                                                      
Sbjct  297  GCCCAGGCTGGAGTGCAATGGCGCGGTCTCGGCTCACCCCAACCTCCACCTCCCGGGTTCAAGAGATTCTCCTG  370

Query  110  ---------------------------CAGATCAGTTGGCCTTATTTCCTCAGTGGAAATCTACTCACTATGAT  156
                                       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCTCAGCCTCCCAAGTAGCTGGGATAACAGATCAGTTGGCCTTATTTCCTCAGTGGAAATCTACTCACTATGAT  444

Query  157  GTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTCGAAACGTGATAAGAAGCACCTGGATGAGACA  230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTCGAAACGTGATAAGAAGCACCTGGATGAGACA  518

Query  231  TTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAGTTCATAATAGGTGCTCATGGCTGTGAAGTGC  304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAGTTCATAATAGGTGCTCATGGCTGTGAAGTGC  592

Query  305  CTGTGGAAGACAGGGAAGATCCTTATTCCTGTAAACTACTCAACATCACAAATCCAGTTTTGAATCAGGAAATT  378
            ||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTGTGGAAGACAGGGAGGATCCTTATTCCTGTAAACTACTCAACATCACAAATCCAGTTTTGAATCAGGAAATT  666

Query  379  GAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTGAGGATCGAGTTGTCAGCGTGAGTTTCCGAGT  452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTGAGGATCGAGTTGTCAGCGTGAGTTTCCGAGT  740

Query  453  TCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGATGCCAATGATGTGGGTTTCCAGAGGAACATCA  526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGATGCCAATGATGTGGGTTTCCAGAGGAACATCA  814

Query  527  CTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCATTGCTCGCTTCAGTCCTCCAAGCTGTGGTGTG  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCATTGCTCGCTTCAGTCCTCCAAGCTGTGGTGTG  888

Query  601  CAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCTTACCAGAGAGCTTTGAAGGTACAATCGTGTG  674
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCTTACCAGAGAGCTTTGAAGGTACAATCGTGTG  962

Query  675  GGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCACAAAGTGACAGTGAATGATGGAGGGGGAGTTC  748
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCACAAAGTGACAGTGAATGATGGAGGGGGAGTTC  1036

Query  749  TCAGAGTCATTACAGCTGGGGAGGGTGCATTGCCTCATGAATTCTTGGAAGGTGTGGAGGGAGTTGCAGGTGGT  822
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TCAGAGTCATTACAGCTGGGGAGGGTGCATTGCCTCATGAATTCTTGGAAGGTGTGGAGGGAGTTGCAGGTGGT  1110

Query  823  TTTATATATACTATTCAGGAAGGTGATGCTCTCTTACACAACCTTCATTCTCGCCCTCAAAGACTTATTGATCA  896
            ||||||||||||||||||                                                        
Sbjct 1111  TTTATATATACTATTCAG--------------------------------------------------------  1128

Query  897  TATAAGGAATCTCCATGAGGAAGATGCCTTACTGAAGGAGGAAAGCAGCATCTATGATGATATTGTTTTTGTGG  970
                                                                                      
Sbjct 1129  --------------------------------------------------------------------------  1128

Query  971  ATGTTGTCGACACTTATCGTAATGTTCCTGCAAAATTATTGAACTTCTATAGATGGACTGTGGAAACAACGAGC  1044
                                                                  ||||||||||||||||||||
Sbjct 1129  ------------------------------------------------------GGACTGTGGAAACAACGAGC  1148

Query 1045  TTCAATTTGTTGCTGAAGACAGATGATGACTGTTACATAGACCTCGAAGCTGTATTTAATAGGATTGTCCAAAA  1118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149  TTCAATTTGTTGCTGAAGACAGATGATGACTGTTACATAGACCTCGAAGCTGTATTTAATAGGATTGTCCAAAA  1222

Query 1119  GAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGACTGAATTGGGCAGTTGACCGAACCGGAAAGTGGC  1192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223  GAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGACTGAATTGGGCAGTTGACCGAACCGGAAAGTGGC  1296

Query 1193  AGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCATGTGGGTCAGGATATGTGATCTCCAAGGACATC  1266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297  AGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCATGTGGGTCAGGATATGTGATCTCCAAGGACATC  1370

Query 1267  GTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTATCAGGGTGAAGATGTAAGCATGGGCATCTGGAT  1340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371  GTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTATCAGGGTGAAGATGTAAGCATGGGCATCTGGAT  1444

Query 1341  GGCTGCCATAGGACCTAAAAGATACCAGGACAGTCTGTGGCTGTGTGAGAAGACCTGTGAGACAGGAATGCTGT  1414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445  GGCTGCCATAGGACCTAAAAGATACCAGGACAGTCTGTGGCTGTGTGAGAAGACCTGTGAGACAGGAATGCTGT  1518

Query 1415  CTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGGAAACTGAAGGAACGGTGCGGTGATCCTTGTCGA  1488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519  CTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGGAAACTGAAGGAACGGTGCGGTGATCCTTGTCGA  1592

Query 1489  TGTCAAGCAAGA--------------------------------------------------------------  1500
            ||||||||||||                                                              
Sbjct 1593  TGTCAAGCAAGATAACAGGGACTTGAATTAGCAGAGTCTAAAATCAGGGCAGGCAAACGATAATCTGAGTGCAA  1666

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1667  GTCTGAGGAGTCCCAGGGTTTAGCAGTAGACTGTATGGTCTTTCAAGAGAGTTCCAGACTGGCACTTTCACCCA  1740

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1741  GAACCAATGCGGTGTTTCTTAATGTTTGCACAAATTTCCTTAAAAATCAACTTGTACTGTAGCATAAGAAAAGT  1814

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1815  TTTTATTTATCTATTGGAAGATTATCAGAAAAATACCAAGTTATTTTATAAAAGAAAAAATATTTCTAAATCCT  1888

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1889  GATGCATTGTGGCTAATTAGTAATTCACCATTACCTATAGTTTTTGGTTAAAACTTGGCCTAGTTCAGAAATCT  1962

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1963  GTAGTAGTAACTGAGAGTTTGAATTTCAACCTGGATTGCAGGATAGCTCTGTAGAGCTAATTAGGATAATTATC  2036

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2037  AGACAAAAAGGAACTCACAGGAATGCTGTGTGATCATGTGATCACATATTTGAGCAGTGGTCACTTATACCAAA  2110

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2111  GTTTGGGGTTTCTGGAAATAATGTCAGATTTTGTGGATCTCTGAAGTGGGCAACTTGAACTAACTTGAAGAGGA  2184

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2185  ACCAATATGATTCTCAGTTCTGAACCTTGGTTTTAAAGAAGTTCATTTATATGGTAGACTAATACCCAAATTTT  2258

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2259  CTTTCTGCCATCTAACATAAATCCTGAAGGTCACAGTTTAGTACTCATAGTTTTTAAATGCTAAAGTTGTGTGA  2332

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2333  GTATGAATAAAAGCAAATACCTCTCAGGGTTTTAGTGCCATCGGGAAGGATATTTCTAAATTTTGTTGACATTT  2406

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2407  TGAAAGAATTAGTTTTGCTTTCCTCCTATCATTGCCTAATGTTTACCTAATATGAGTACATTTCAATCAAAGCT  2480

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2481  GGTTATCACAGAAGAAGATATACTCAGCTTAGGTATAATTGTAGGGAAAAGCATGTGATTAATTTAAGTACTCT  2554

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2555  TAGAAATAGTGCAACTGAGAAGACAGATAATAGCATATTGTTATACATAGTAGAGGATGTCTCCCCAAGTTTAA  2628

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2629  GGGACATTTCCCAAAATGACCAACCAAATCATTTCTAGTAACCCTTTAAAATAGTAGTTTCAATAGAGAATTCC  2702

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2703  ATTAAAACTAGTCTTATGACAGATATTAACTGTGTTCAGATTTTATTAGGCTAGCTAGTTTCTTTCTATTTAAT  2776

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2777  ATTTAAATCTTATCATGAAATGCAGTGATGAGCTGTAAAAATAAATATGAAATAAGATCAGAAAATCATTAGTA  2850

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2851  GGTTCAAAGCCTTTATTATTGCTATTATGTATAAGCCTAGAAATGGTCACTTCCCAACAAAAAATACATCCCTT  2924

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2925  GTTATACTTAGGACAAGTTGTAAACCCCCTTTGTTTTGACAGTAGAATTGTTCCAGTGAATCATTTATTTCCGG  2998

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2999  TGAACCCCAGACACGATAAGCAGTGTGGTCTTTAAATTTTATTAGTTGGTTGTCACCATCGCACTAATAGACAA  3072

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3073  TCTCCATTTTCCACAGAATAAAACTGTAATGACTTTAGGTCATTTTCCAGCTCGATTTCTCTGCCCGGCTTCTA  3146

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3147  AAATTAGAACGAAGGTGGGGAAGGATGTGATTAAGACAGATCCGATAAAGCATGCTACACATACTCTTCCCCCA  3220

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3221  CCCCGTCCCCAGGCAGTAGCTTACCCTTAAAATCAAACAAACAGACCCATGGTCTCCATTTAGAATCAAACTGT  3294

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3295  TGCTATCTAGAGACAGTTTAATGTCATAATACGAGGACTAAGCTTGACTTTGACTTTGTATTTTGCTGGGCAAC  3368

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3369  TTACTTTGGGACTTTCATAGGACAACAGAAGGTCTGACACAGGAACTTTGAGAAGACGTGACAGCAATCCCTTC  3442

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3443  ACCTTTTGAATTGTCATGGAGCCTATCAAAAGACAAGAAAAGTCCATTCGTTCTCTCAAATGACAGTTACCTGT  3516

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3517  AAAACTAGCTCATGTGATGAGACCACAGTATCATTGCAATGATAGCTGTATCTGTCTTTTTTTTTTTTTTTTTT  3590

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3591  TTGAGACTGACTTACTTACTTACTTAAGTAAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAATGGTGTAATCTC  3664

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3665  GGCTCACTGCAACCTCCGCTTCCCGGGTTCAAACAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGTGCCCATC  3738

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3739  ACCACACCCAGCTAACTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTC  3812

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3813  CTGACCTCGTGATCCGCCCGCCCTGGCCCCCCAAAGTGCTGGGATTACAAGCATGAGCCCAGCGCCTGGCTGTA  3886

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3887  TCTTTCATTTTACCCAAGTCACTTTACCCAAGTAAGTAATTAGGGGAAAGCCTGAGTCTTGTACCACCTGTTCA  3960

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3961  TTTGGGGAACTGTGGGAAACGGAGCCAACGGACCTAAGTGCCCTTTGACAGTGAGTTTCATACCATTTCAGTAG  4034

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4035  TGTATTTCTTTCTTAATCTGAATAAACCAGAATGATACTCTCAGCACAGAAGAATAAAGGGAGCGAGTCATTAA  4108

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4109  CGTTTTCTTTTTAAACCTTTATGATGACTTCCTTATGAATTACTGAACGAACACTGGAATGGGACTCAGGTATC  4182

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4183  CTGAGGACATCTCTCAACTCTGGCCTTAGTTCCCCCTCTGTAAAATTAGGGTGCCAACTAAATGATCTACAAGG  4256

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4257  TCCCTTCCAGCGCCGCCATTCTGTAATTACATCATGTGTAACTGTATTAAACATACACAAGTGACTGCCAGGCA  4330

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4331  TGGGAATGTAACTTCCGAGTAAATGCTTTGGTTTGTTCAGAATACACTATGAACTTCTTTCCAAAGACGGGTTG  4404

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4405  TGGTAAATAGTGGATATTTTGATTATAAGAAATAGAGTTTCCTTGAAGCTTTAGCTGGAGATACAGCAATAGTG  4478

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4479  TGGTGTTCCTACAAATATCACAGTGTATTCAAACATATTTTTCTATCAAAAATCATTTTTGTAAAAGCTGTGTG  4552

Query 1501  ------------------------------------------------  1500
                                                            
Sbjct 4553  TTTTTATCCAACTTGTGATAATAAATGTTCTTTATTTTAGAATAAAAA  4600

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