Nucleotide Global Alignment

Description

Query:
ccsbBroad304_05019
Subject:
XR_001736989.1
Aligned Length:
4784
Identities:
1236
Gaps:
3547

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGCGGGGCCGGGAGCTGCGAGGAGCCCCCCAGACGTCGCCGAGCGCGAGGGCGGGCGTGCTCGGAGTGGTCGCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGTCAGCCGCCGCCCCTCAGTCTCCGCACTTGCAGGTCCCCTCCCTCTCCGCCGGGACGCGGGAGAGCCCGGCT  148

Query    1  -----------------ATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTGCACCTC  57
                             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CGCGGCGGGGGCGGCCAATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTGCACCTC  222

Query   58  TGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTG----------------------  109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||                      
Sbjct  223  TGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTGCAGGTGGAGTCTCACTCTTGTT  296

Query  110  --------------------------------------------------------------------------  109
                                                                                      
Sbjct  297  GCCCAGGCTGGAGTGCAATGGCGCGGTCTCGGCTCACCCCAACCTCCACCTCCCGGGTTCAAGAGATTCTCCTG  370

Query  110  ---------------------------CAGATCAGTTGGCCTTATTTCCTCAGTGGAAATCTACTCACTATGAT  156
                                       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCTCAGCCTCCCAAGTAGCTGGGATAACAGATCAGTTGGCCTTATTTCCTCAGTGGAAATCTACTCACTATGAT  444

Query  157  GTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTCGAAACGTGATAAGAAGCACCTGGATGAGACA  230
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTCGAAACGTGATAAGAAGCACCTGGATGAGACA  518

Query  231  TTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAGTTCATAATAGGTGCTCATGGCTGTGAAGTGC  304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAGTTCATAATAGGTGCTCATGGCTGTGAAGTGC  592

Query  305  CTGTGGAAGACAGGGAAGATCCTTATTCCTGTAAACTACTCAACATCACAAATCCAGTTTTGAATCAGGAAATT  378
            ||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CTGTGGAAGACAGGGAGGATCCTTATTCCTGTAAACTACTCAACATCACAAATCCAGTTTTGAATCAGGAAATT  666

Query  379  GAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTGAGGATCGAGTTGTCAGCGTGAGTTTCCGAGT  452
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTGAGGATCGAGTTGTCAGCGTGAGTTTCCGAGT  740

Query  453  TCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGATGCCAATGATGTGGGTTTCCAGAGGAACATCA  526
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGATGCCAATGATGTGGGTTTCCAGAGGAACATCA  814

Query  527  CTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCATTGCTCGCTTCAGTCCTCCAAGCTGTGGTGTG  600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCATTGCTCGCTTCAGTCCTCCAAGCTGTGGTGTG  888

Query  601  CAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCTTACCAGAGAGCTTTGAAGGTACAATCGTGTG  674
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCTTACCAGAGAGCTTTGAAGGTACAATCGTGTG  962

Query  675  GGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCACAAAGTGACAGTGAATGATGGAGGGGGAGTTC  748
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCACAAAGTGACAGTGAATGATGGAGGGGGAGTTC  1036

Query  749  TCAGAGTCATTACAGCTGGGGAGGGTGCATTGCCTCATGAATTCTTGGAAGGTGTGGAGGGAGTTGCAGGTGGT  822
            ||||||||||||||                                                            
Sbjct 1037  TCAGAGTCATTACA------------------------------------------------------------  1050

Query  823  TTTATATATACTATTCAGGAAGGTGATGCTCTCTTACACAACCTTCATTCTCGCCCTCAAAGACTTATTGATCA  896
                                                                                      
Sbjct 1051  --------------------------------------------------------------------------  1050

Query  897  TATAAGGAATCTCCATGAGGAAGATGCCTTACTGAAGGAGGAAAGCAGCATCTATGATGATATTGTTTTTGTGG  970
                                                                                      
Sbjct 1051  --------------------------------------------------------------------------  1050

Query  971  ATGTTGTCGACACTTATCGTAATGTTCCTGCAAAATTATTGAACTTCTATAGATGGACTGTGGAAACAACGAGC  1044
                                                                   |||||||||||||||||||
Sbjct 1051  -------------------------------------------------------GACTGTGGAAACAACGAGC  1069

Query 1045  TTCAATTTGTTGCTGAAGACAGATGATGACTGTTACATAGACCTCGAAGCTGTATTTAATAGGATTGTCCAAAA  1118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070  TTCAATTTGTTGCTGAAGACAGATGATGACTGTTACATAGACCTCGAAGCTGTATTTAATAGGATTGTCCAAAA  1143

Query 1119  GAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGACTGAATTGGGCAGTTGACCGAACCGGAAAGTGGC  1192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144  GAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGACTGAATTGGGCAGTTGACCGAACCGGAAAGTGGC  1217

Query 1193  AGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCATGTGGGTCAGGATATGTGATCTCCAAGGACATC  1266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218  AGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCATGTGGGTCAGGATATGTGATCTCCAAGGACATC  1291

Query 1267  GTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTATCAGGGTGAAGATGTAAGCATGGGCATCTGGAT  1340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292  GTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTATCAGGGTGAAGATGTAAGCATGGGCATCTGGAT  1365

Query 1341  GGCTGCCATAGGACCTAAAAGATACCAGGACAGTCTGTGGCTGTGTGAGAAGACCTGTGAGACAGGAATGCTGT  1414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366  GGCTGCCATAGGACCTAAAAGATACCAGGACAGTCTGTGGCTGTGTGAGAAGACCTGTGAGACAGGAATGCTGT  1439

Query 1415  CTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGGAAACTGAAGGAACGGTGCGGTGATCCTTGTCGA  1488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440  CTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGGAAACTGAAGGAACGGTGCGGTGATCCTTGTCGA  1513

Query 1489  TGTCAAGCAAGA--------------------------------------------------------------  1500
            ||||||||||||                                                              
Sbjct 1514  TGTCAAGCAAGATAACAGGGACTTGAATTAGCAGAGTCTAAAATCAGGGCAGGCAAACGATAATCTGAGTGCAA  1587

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1588  GTCTGAGGAGTCCCAGGGTTTAGCAGTAGACTGTATGGTCTTTCAAGAGAGTTCCAGACTGGCACTTTCACCCA  1661

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1662  GAACCAATGCGGTGTTTCTTAATGTTTGCACAAATTTCCTTAAAAATCAACTTGTACTGTAGCATAAGAAAAGT  1735

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1736  TTTTATTTATCTATTGGAAGATTATCAGAAAAATACCAAGTTATTTTATAAAAGAAAAAATATTTCTAAATCCT  1809

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1810  GATGCATTGTGGCTAATTAGTAATTCACCATTACCTATAGTTTTTGGTTAAAACTTGGCCTAGTTCAGAAATCT  1883

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1884  GTAGTAGTAACTGAGAGTTTGAATTTCAACCTGGATTGCAGGATAGCTCTGTAGAGCTAATTAGGATAATTATC  1957

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 1958  AGACAAAAAGGAACTCACAGGAATGCTGTGTGATCATGTGATCACATATTTGAGCAGTGGTCACTTATACCAAA  2031

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2032  GTTTGGGGTTTCTGGAAATAATGTCAGATTTTGTGGATCTCTGAAGTGGGCAACTTGAACTAACTTGAAGAGGA  2105

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2106  ACCAATATGATTCTCAGTTCTGAACCTTGGTTTTAAAGAAGTTCATTTATATGGTAGACTAATACCCAAATTTT  2179

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2180  CTTTCTGCCATCTAACATAAATCCTGAAGGTCACAGTTTAGTACTCATAGTTTTTAAATGCTAAAGTTGTGTGA  2253

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2254  GTATGAATAAAAGCAAATACCTCTCAGGGTTTTAGTGCCATCGGGAAGGATATTTCTAAATTTTGTTGACATTT  2327

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2328  TGAAAGAATTAGTTTTGCTTTCCTCCTATCATTGCCTAATGTTTACCTAATATGAGTACATTTCAATCAAAGCT  2401

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2402  GGTTATCACAGAAGAAGATATACTCAGCTTAGGTATAATTGTAGGGAAAAGCATGTGATTAATTTAAGTACTCT  2475

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2476  TAGAAATAGTGCAACTGAGAAGACAGATAATAGCATATTGTTATACATAGTAGAGGATGTCTCCCCAAGTTTAA  2549

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2550  GGGACATTTCCCAAAATGACCAACCAAATCATTTCTAGTAACCCTTTAAAATAGTAGTTTCAATAGAGAATTCC  2623

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2624  ATTAAAACTAGTCTTATGACAGATATTAACTGTGTTCAGATTTTATTAGGCTAGCTAGTTTCTTTCTATTTAAT  2697

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2698  ATTTAAATCTTATCATGAAATGCAGTGATGAGCTGTAAAAATAAATATGAAATAAGATCAGAAAATCATTAGTA  2771

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2772  GGTTCAAAGCCTTTATTATTGCTATTATGTATAAGCCTAGAAATGGTCACTTCCCAACAAAAAATACATCCCTT  2845

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2846  GTTATACTTAGGACAAGTTGTAAACCCCCTTTGTTTTGACAGTAGAATTGTTCCAGTGAATCATTTATTTCCGG  2919

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2920  TGAACCCCAGACACGATAAGCAGTGTGGTCTTTAAATTTTATTAGTTGGTTGTCACCATCGCACTAATAGACAA  2993

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 2994  TCTCCATTTTCCACAGAATAAAACTGTAATGACTTTAGGTCATTTTCCAGCTCGATTTCTCTGCCCGGCTTCTA  3067

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3068  AAATTAGAACGAAGGTGGGGAAGGATGTGATTAAGACAGATCCGATAAAGCATGCTACACATACTCTTCCCCCA  3141

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3142  CCCCGTCCCCAGGCAGTAGCTTACCCTTAAAATCAAACAAACAGACCCATGGTCTCCATTTAGAATCAAACTGT  3215

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3216  TGCTATCTAGAGACAGTTTAATGTCATAATACGAGGACTAAGCTTGACTTTGACTTTGTATTTTGCTGGGCAAC  3289

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3290  TTACTTTGGGACTTTCATAGGACAACAGAAGGTCTGACACAGGAACTTTGAGAAGACGTGACAGCAATCCCTTC  3363

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3364  ACCTTTTGAATTGTCATGGAGCCTATCAAAAGACAAGAAAAGTCCATTCGTTCTCTCAAATGACAGTTACCTGT  3437

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3438  AAAACTAGCTCATGTGATGAGACCACAGTATCATTGCAATGATAGCTGTATCTGTCTTTTTTTTTTTTTTTTTT  3511

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3512  TTGAGACTGACTTACTTACTTACTTAAGTAAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAATGGTGTAATCTC  3585

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3586  GGCTCACTGCAACCTCCGCTTCCCGGGTTCAAACAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGTGCCCATC  3659

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3660  ACCACACCCAGCTAACTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTC  3733

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3734  CTGACCTCGTGATCCGCCCGCCCTGGCCCCCCAAAGTGCTGGGATTACAAGCATGAGCCCAGCGCCTGGCTGTA  3807

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3808  TCTTTCATTTTACCCAAGTCACTTTACCCAAGTAAGTAATTAGGGGAAAGCCTGAGTCTTGTACCACCTGTTCA  3881

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3882  TTTGGGGAACTGTGGGAAACGGAGCCAACGGACCTAAGTGCCCTTTGACAGTGAGTTTCATACCATTTCAGTAG  3955

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 3956  TGTATTTCTTTCTTAATCTGAATAAACCAGAATGATACTCTCAGCACAGAAGAATAAAGGGAGCGAGTCATTAA  4029

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4030  CGTTTTCTTTTTAAACCTTTATGATGACTTCCTTATGAATTACTGAACGAACACTGGAATGGGACTCAGGTATC  4103

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4104  CTGAGGACATCTCTCAACTCTGGCCTTAGTTCCCCCTCTGTAAAATTAGGGTGCCAACTAAATGATCTACAAGG  4177

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4178  TCCCTTCCAGCGCCGCCATTCTGTAATTACATCATGTGTAACTGTATTAAACATACACAAGTGACTGCCAGGCA  4251

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4252  TGGGAATGTAACTTCCGAGTAAATGCTTTGGTTTGTTCAGAATACACTATGAACTTCTTTCCAAAGACGGGTTG  4325

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4326  TGGTAAATAGTGGATATTTTGATTATAAGAAATAGAGTTTCCTTGAAGCTTTAGCTGGAGATACAGCAATAGTG  4399

Query 1501  --------------------------------------------------------------------------  1500
                                                                                      
Sbjct 4400  TGGTGTTCCTACAAATATCACAGTGTATTCAAACATATTTTTCTATCAAAAATCATTTTTGTAAAAGCTGTGTG  4473

Query 1501  ------------------------------------------------  1500
                                                            
Sbjct 4474  TTTTTATCCAACTTGTGATAATAAATGTTCTTTATTTTAGAATAAAAA  4521

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