Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_05419
- Subject:
- NR_148402.1
- Aligned Length:
- 6169
- Identities:
- 1110
- Gaps:
- 5012
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGCACCTGAAGCCCTTCGGGGCAGAGGAGGGCGGGGACTCGGGGCGGCTCTCAGCATCCGCCTGGAGCTCGTGG 74
Query 1 ---------------------------------------------------ATGCACAATTTTGAGGAAGAGTT 23
|||||||||||||||||||||||
Sbjct 75 CGCTGTGTTTCCGTGCTGTGGAGTTGCCTGGTCCGCTTCCTCCCCGCGGAAATGCACAATTTTGAGGAAGAGTT 148
Query 24 AACTTGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGCCATGCTCTCATACATTTTGTAGAAATT 97
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 AACTTGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGCCATGCTCTCATACATTTTGTAGAAATT 222
Query 98 GTTTGGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATGGAGACCTTTACGAATTCCACTCAAGTGCCCT 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GTTTGGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATGGAGACCTTTACGAATTCCACTCAAGTGCCCT 296
Query 172 AATTGCAGAAGTATTACTGAAATTGCTCCAACTGGCATTGAATCTTTACCTGTTAATTTTGCACTAAGGGCTAT 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AATTGCAGAAGTATTACTGAAATTGCTCCAACTGGCATTGAATCTTTACCTGTTAATTTTGCACTAAGGGCTAT 370
Query 246 TATTGAAAAGTACCAGCAAGAAGACCATCCAGATATTGTCACCTGCCCTGAACATTACAGGCAACCATTAAATG 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TATTGAAAAGTACCAGCAAGAAGACCATCCAGATATTGTCACCTGCCCTGAACATTACAGGCAACCATTAAATG 444
Query 320 TTTACTGTCTATTAGATAAAAAATTAGTTTGTGGTCATTGCCTTACCATAGGTCAACATCATGGTCATCCTATA 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TTTACTGTCTATTAGATAAAAAATTAGTTTGTGGTCATTGCCTTACCATAGGTCAACATCATGGTCATCCTATA 518
Query 394 GATGACCTTCAAAGTGCCTATTTGAAAGAAAAGGACACTCCTCAAAAACTGCTTGAACAGTTGACTGACACACA 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GATGACCTTCAAAGTGCCTATTTGAAAGAAAAGGACACTCCTCAAAAACTGCTTGAACAGTTGACTGACACACA 592
Query 468 CTGGACAGATCTTACCCATCTTATTGAAAAGCTGAAAGAACAAAAATCTCATTCTGAGAAAATGATCCAAGGCG 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTGGACAGATCTTACCCATCTTATTGAAAAGCTGAAAGAACAAAAATCTCATTCTGAGAAAATGATCCAAGGCG 666
Query 542 ATAAGGAAGCTGTTCTCCAGTATTTTAAGGAGCTTAATGATACATTAGAACAGAAAAAAAAAAGTTTCCTAACG 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ATAAGGAAGCTGTTCTCCAGTATTTTAAGGAGCTTAATGATACATTAGAACAGAAAAAAAAAAGTTTCCTAACG 740
Query 616 GCTCTCTGTGATGTTGGCAATCTAATTAATCAAGAATATACTCCACAAATTGAAAGAATGAAGGAAATACGAGA 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCTCTCTGTGATGTTGGCAATCTAATTAATCAAGAATATACTCCACAAATTGAAAGAATGAAGGAAATACGAGA 814
Query 690 GCAGCAGCTTGAATTAATGGCACTGACAATATCTTTACAAGAAGAGTCTCCACTTAAATTTCTTGAAAAAGTTG 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GCAGCAGCTTGAATTAATGGCACTGACAATATCTTTACAAGAAGAGTCTCCACTTAAATTTCTTGAAAAAGTTG 888
Query 764 ATGATGTACGCCAGCATGTACAGATCTTGAAACAAAGACCACTTCCTGAGGTTCAACCCGTTGAAATTTATCCT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ATGATGTACGCCAGCATGTACAGATCTTGAAACAAAGACCACTTCCTGAGGTTCAACCCGTTGAAATTTATCCT 962
Query 838 CGAGTAAGCAAAATATTGAAAGAAGAATGGAGCAGAACAGAAATTGGACAAATTAAGAACGTTCTCATTCCCAA 911
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CGAGTAAGCAAAATATTGAAAGAAGAATGGAGCAGAACAGAAATTGGACAAATTAAGAACGTTCTCATTCCCAA 1036
Query 912 AATGAAAATTTCTCCAAAAAGGATGTCATGTTCCTGGCCTGGTAAGGATGAAAAGGAAGTTGAATTTTTAAAAA 985
|||||||||||||||||||||||||||||||||||||||| |||| || |.||..||||.|.||.|| |||
Sbjct 1037 AATGAAAATTTCTCCAAAAAGGATGTCATGTTCCTGGCCT-GTAA--AT-ACAATCAAGTGGCATCTT---AAA 1103
Query 986 TTTTAAACATTGTTGTAGTTACATTAATTTCAGTAAT---ACTGATGTCGATA-CTCTTTTTCAACCAACACAT 1055
||| |||.|| .||.|..|||.|| |||.| .|||| |||||||..||..|.||.|.
Sbjct 1104 TTT------TTGCTG---------GAAGTGGAGTCATGAGACTAA---AGATATCTCTTTTAAAAGAACCAAAG 1159
Query 1056 CATAACCTTTTTAAGTG-----AAATCACTTTAATATGG-TTTTCTGA-----AGCCTCTCTATCTGTTTACCA 1118
||||.|||||| |.|| ||||| ||| .||| ||||||.| || ||| |||| .|
Sbjct 1160 CATATCCTTTT--AATGCTTATAAATC---TTA--TTGGATTTTCTTAATTATAG------TAT-TGTT---AA 1216
Query 1119 AAGTTTATCTAACAGTCTGCATA----AGGTAAAGAATATACTGTGTCACATTTTCTATT-------------- 1174
||||||.|||| .|..||| ||.|.|||||||.|.|.|.| ||||| |||
Sbjct 1217 AAGTTTCTCTA-----TTTTATATCCTAGTTGAAGAATAGATTTTTT----TTTTC-ATTCCTTTAGTGGCTGT 1280
Query 1175 ------------TGTTGAAGGAATT-------TGTGTGGAAAATAGTTTCCCAT-------------------- 1209
|.||.|||.|.|| |||||.|.||.||.||..|||.
Sbjct 1281 TTACCTAAATTGTTTTAAAGTATTTAAGATCATGTGTTGTAAGTAATTCTCCAAAGTGAACCGTTTGCTATAAA 1354
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 1355 TCTTATTTTAAAATTCTTACTGACGTTTTTCTTACTCTACTTAAGTACTATACTTAAATACTTAAAAAGCAGTT 1428
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 1429 TTTGTTTACTTTAGTAGGATCTTAAAAAGAAGCTTTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCACC 1502
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 1503 CAGGCTGGAGTACAGTGGTGTGATCTCAACTCACTGCAACCCTCTACCTCCTGGGTTCAAGTGATTCTCCTGCC 1576
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 1577 TCAGCCTCCTGAGCAGCTCAGATTATAGGCACCCGCCAACATGCCCGGCTAATTTTTGTATTTTTAGTAGAGAC 1650
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 1651 GGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCTCGACCTCAGGTGATCCACCCGCCCCAGCCTCCCAAA 1724
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 1725 GTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCAAAATGAAGCATTTTTTAAACCAAACTGTTTCTTTGC 1798
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 1799 TAGTGTGATCTAGCATGTATTCATTCCACTGTGCTCTATTTCTTTACATTCATGATAAAGTGAAGGACAAGTTG 1872
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 1873 GGGAAATCTGAGCAGTCAGATCCTCATTATTTCACATGGGAAGGTGGCAATTAATAATATTTTCTCAAACACAT 1946
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 1947 GACCCTATATTTTGTCAGCAAGAGTCCCCAGTTATGTGTCAAGGAGATATGACAGGCCCCACTATCATCATTCT 2020
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2021 TAGACATTTAGACTAATTCTGCTCAAAGTATCCTTTGTAGACTTTATTGCAGGTCTGTGAAAGAATAGGTAAAT 2094
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2095 AAATTGAAAGTAAGGGCTGAGAAATTTTTGTAGCAATTTGACATTGTTATAATGTCCAATTTTTCTAATATTTT 2168
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2169 ATTTTTATTGTATCTTACGAAATATCCATATGCAATGGATTCGAAATAAAGAAAAATCTGGTCCTTCATCAGAA 2242
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2243 CTAGGAAAGCACTGATTTAAACATTTGGTCAGACATTTTAAATTGAATTAGTAAGCTGTGTGGGCTGGACTACT 2316
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2317 GCTGAAGAGCTGTATTCATGTAGTGATGATCACCAGATAGTGAAGTGGAACTTGTTAACCAGTGAAACAACTCA 2390
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2391 AATAGTAAAGCTTCCTGATGATATTTACCCTATTGATTTTCACTGGTTTCCAAAAAGTTTGGGTGTAAAGAAAC 2464
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2465 AAACCCAGGCAGAAAGCTTTGTCCTCACAAGTTCTGATGGTAAATTTCATCTGATTTCCAAGTTAGGAAGAGTG 2538
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2539 GAAAAAAGTGTAGAAGCTCACTGTGGAGCAGTACTTGCAGGAAGATGGAATTATGAAGGAACAGCATTAGTTAC 2612
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2613 AGTTGGAGAAGATGGACAAATAAAAATTTGGTCAAAGACTGGGATGCTTAGATCAACTTTAGCTCAGCAAGGAA 2686
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2687 CACCAGTGTATTCAGTAGCGTGGGGCCCTGATTCAGAAAAGGTTCTTTATACAGCAGGCAAGCAGCTAATCATT 2760
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2761 AAACCTCTTCAACCAAATGCTAAAGTTTTGCAGTGGAAAGCTCATGATGGCATTATTTTAAAAGTAGATTGGAA 2834
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2835 CTCGGTCAATGATCTTATTTTATCTGCTGGTGAAGACTGTAAATATAAGGTATGGGATAGTTACGGCCGCCCAC 2908
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2909 TGTACAATTCACAACCTCATGAGCATCCCATTACTTCAGTTGCCTGGGCTCCAGATGGAGAATTATTTGCTGTT 2982
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2983 GGATCGTTTCATACTTTACGCTTGTGTGATAAAACTGGGTGGTCATATGCATTAGAAAAACCCAACACTGGCAG 3056
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3057 CATATTTAATATTGCATGGTCTATCGATGGCACTCAGATTGCTGGAGCCTGTGGAAATGGACATGTCGTTTTTG 3130
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3131 CACATGTGGTGGAACAACATTGGGAGTGGAAAAATTTTCAAGTAACATTAACGAAAAGAAGAGCCATGCAGGTT 3204
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3205 CGTAATGTTCTTAATGATGCAGTGGATTTACTGGAATTCCGTGATAGAGTCATTAAAGCATCTTTGAACTATGC 3278
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3279 ACACTTAGTTGTTTCAACGTCTCTTCAATGTTACGTGTTCTCCACGAAGAACTGGAACACACCAATTATATTTG 3352
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3353 ATCTCAAAGAAGGAACTGTTAGTTTGATTCTGCAGGCAGAAAGACATTTTCTTCTTGTAGATGGTAGTAGTATC 3426
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3427 TATTTATATTCATATGAAGGGCGCTTTATTTCATCTCCAAAATTTCCTGGAATGAGAACAGATATTCTGAATGC 3500
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3501 ACAGACTGTGTCTTTGAGTAATGATACCATAGCAATAAGAGACAAAGCTGATGAAAAAATAATCTTCCTCTTTG 3574
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3575 AGGCATCAACCGGAAAGCCGTTAGGTGATGGAAAGTTTCTTTCTCATAAGAATGAAATCTTGGAAATTGCTCTG 3648
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3649 GATCAAAAAGGACTTACCAATGATAGAAAAATTGCTTTCATTGATAAAAATAGAGATCTCTGTATCACTTCTGT 3722
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3723 GAAACGATTTGGGAAGGAAGAACAAATTATCAAGCTTGGAACAATGGTGCATACTTTGGCATGGAACGATACAT 3796
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3797 GCAATATCCTTTGTGGACTTCAAGATACTCGATTTATAGTGTGGTATTACCCCAATACAGTTTATGTGGACAGA 3870
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3871 GACATTTTGCCTAAAACATTATATGAAAGGGATGCAAGTGAATTTAGTAAAAATCCCCATATTGTGAGTTTTGT 3944
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3945 TGGAAATCAAGTAACTATTAGAAGAGCTGATGGCTCCCTGGTTCACATCAGCATAACACCATATCCTGCTATTC 4018
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 4019 TCCATGAATATGTAAGCAGTTCAAAATGGGAAGATGCTGTGAGACTTTGTCGCTTTGTTAAGGAGCAAACCATG 4092
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 4093 TGGGCTTGTCTAGCTGCTATGGCAGTTGCTAATCGAGATATGACTACTGCAGAAATAGCCTATGCAGCAATTGG 4166
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 4167 TGAAATTGATAAGGTTCAGTACATCAATTCTATAAAAAATCTTCCATCTAAAGAATCAAAAATGGCCCACATAC 4240
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 4241 TACTGTTTAGTGGGAACATACAGGAGGCTGAAATAGTACTTCTTCAGGCTGGCCTTGTTTATCAAGCAATCCAG 4314
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 4315 ATCAATATTAATCTCTACAACTGGGAAAGGGCACTGGAATTGGCTGTAAAATACAAAACACATGTTGATACAGT 4388
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 4389 TCTTGCTTACCGTCAAAAGTTTTTGGAGACATTTGGTAAACAGGAAACTAATAAACGATACTTGCATTATGCAG 4462
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 4463 AAGGTCTCCAAATAGATTGGGAGAAAATCAAAGCCAAAATTGAGATGGAAATTACAAAAGAAAGAGAGCAATCA 4536
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 4537 TCAAGCAGCCAATCCAGCAAGAGTATAGGTTTAAAGCCCTAAATGCCATGCGTATCTTTAAGAAATTTTATCTT 4610
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 4611 TTGAAACACGTTCTGATTAACCAAGGGTAAGCATGTTTTGGTTGCTAAAGAAAAAAGCATAATCTTTAACCGAG 4684
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 4685 TATAAGTACTTGCTGTGTATTTAGTGTAAAAGTACATGCAGAAAGATGAAACACAAAGTAATTGATGTATTTCT 4758
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 4759 ATCTTTTATATTTTTTAGTCCAATAATTAGCAAAATATTACTATGTACTTAAGAGATACCTGTGTAGTGTCGAT 4832
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 4833 TATATGTCAGTTTTTTGCCCATTACTTCATCCCTAAATCTTCAGCATGAACAAATATTAATGTCGATAATAAAA 4906
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 4907 CATTGGACTCTTTGAAATGTATGTTACCATTAATTTCTATTTGACCTCTAAATTGTAAAATGCCTCCAAAAGTT 4980
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 4981 TATTTATAGAACAAAAATACATGAGGATGGATTTGTACAAATGTATAAAATGCCACTATTTATACACCAAGTTC 5054
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 5055 ATAGCAGCATTACTGGAATAGCAAAAGATGGAAACAGCTCAAGTGTCTATCATGAATGGATAAACAAATGTGCT 5128
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 5129 ATAATACATACAATGGAATATTATTTAGCTTTAAAAAGGAATGAAATTCTGATAAATACTACCTCAGGATAAAC 5202
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 5203 CTTGAAAACACTATGCTAAGTGAAATAAGCCAGACACAAAAGGCCAAATATGATGCCACTTTTATGAGGTACCA 5276
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 5277 GCATAGGCAAGTTCACAGAAACAGAAAGGAGAATAGTGGTTGCCAGGGACTGCAGGGAGGAGGAAATGGGGGGT 5350
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 5351 GGGGTTATTGTTTAACGAGTACATAGTTTCTGTTTGGGATGAACAAATTCTGGAAATGGATAGCGATGATGGTT 5424
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 5425 GCTCAACATTTTGAATGTTAATGCCACTAAATTGTACCCATAAAAATGGTTAAAATGGTAAATTTTGTTATGTA 5498
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 5499 TATTTTATCATAATTTAAAAAATATATCTAGAATGGGCAAGAAGGATTCTCCTCATTCCTCTCTTGACTTGAGA 5572
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 5573 ATGATCAGTCAATAGGCCCTGAAGTCTGAATTTGTGAAAATTTCCTTGGGTGACAAACTTGTTTGATTACTCTA 5646
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 5647 TTTAGTGTATCCCAAAGTTATTACCACATAATCTTTTAAACAATAAAACAAATACCCCTTAGAAAGTCTTCTGC 5720
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 5721 AAACCCATTTCTGAAAATGGTACATTATAGGGTGGGTATAGATGCATAGATATGGGATTATGTATGATATATAT 5794
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 5795 ATATATACACACACACACAAAGGGATAGAGAGATTACCTCTCTTAACCCCCATTTTAATTACTATGTCTAGGTT 5868
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 5869 TTTTAAATAAAAATCTTTTCTTTTTAACATGTTTCTTTTCTTTTCCGGAATATTGGAATATTCTGTTCTTGATC 5942
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 5943 CAGATGAAATCTGATTGAGCAGTGTACTTACAAGTTGTACTGTGTATGTGTTTCCTATATTGTTATATTTCAAT 6016
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 6017 AAGAAGCTTAAAATGTTTAAAAATAAATGGTTAAAAGGTTTTATGTTATGTATATTTTACCACAATAAATGCAA 6090
Query 1210 --------------------------- 1209
Sbjct 6091 AAAATAAAAAGTCTGTGTTCTAAACAA 6117
